FFCP PHASE1:Hg19::chr2:234398529..234398553,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55230 | |EntrezGene=55230 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20069 | |HGNC=20069 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_ENST00000496298_5end | |association_with_transcript=-14bp_to_ENST00000496298_5end | ||
|cluster_id=chr2:234398529..234398553,- | |||
|coexpression_cluster_id=C4198 | |coexpression_cluster_id=C4198 | ||
|description=CAGE_peak_2_at_USP40_5end | |description=CAGE_peak_2_at_USP40_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000077!2.09e-15!19;CL:0000066!9.72e-09!254;CL:0000220!4.82e-08!246;CL:0002321!8.12e-08!248 | |ontology_enrichment_celltype=CL:0000077!2.09e-15!19;CL:0000066!9.72e-09!254;CL:0000220!4.82e-08!246;CL:0002321!8.12e-08!248 | ||
|ontology_enrichment_celltype_v019=CL:0000077;5.53e-18;19!CL:0000244;2.82e-13;4!CL:0000731;2.82e-13;4!CL:0000349;6.93e-09;19!CL:0000150;3.57e-08;9!CL:0002097;7.22e-08;2!CL:0000359;1.93e-07;32!CL:0002536;9.11e-07;2!CL:0002588;9.11e-07;2 | |ontology_enrichment_celltype_v019=CL:0000077;5.53e-18;19!CL:0000244;2.82e-13;4!CL:0000731;2.82e-13;4!CL:0000349;6.93e-09;19!CL:0000150;3.57e-08;9!CL:0002097;7.22e-08;2!CL:0000359;1.93e-07;32!CL:0002536;9.11e-07;2!CL:0002588;9.11e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000077,4.91e-18,19;CL:0000244,3.52e-13,4;CL:0000731,3.52e-13,4;CL:0000349,6.20e-09,19;CL:0000222,6.72e-09,121;CL:0002321,8.69e-09,250;CL:0000359,2.00e-08,32;CL:0000150,3.42e-08,9;CL:0002097,7.36e-08,2;CL:0000066,8.09e-08,253;CL:0002588,6.30e-07,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005910!1.71e-07!6;UBERON:0000365!2.86e-07!5 | |ontology_enrichment_uberon=UBERON:0005910!1.71e-07!6;UBERON:0000365!2.86e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;3.10e-16;5!UBERON:0005910;1.85e-13;6!UBERON:0000486;6.03e-12;12!UBERON:0000478;9.47e-07;24 | |ontology_enrichment_uberon_v019=UBERON:0000365;3.10e-16;5!UBERON:0005910;1.85e-13;6!UBERON:0000486;6.03e-12;12!UBERON:0000478;9.47e-07;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,3.99e-16,5;UBERON:0005910,2.27e-13,6;UBERON:0000486,4.75e-08,83;UBERON:0003124,3.71e-07,7;UBERON:0005631,4.29e-07,14;UBERON:0000158,4.29e-07,14;UBERON:0000478,8.71e-07,24 | |||
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| ||
|short_description=p2@USP40 | |short_description=p2@USP40 | ||
}} | }} |
Latest revision as of 23:12, 15 September 2015
Short description: | p2@USP40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_USP40_5end |
Coexpression cluster: | C4198_mesothelioma_mucinous_cholangiocellular_Urothelial_transitionalcell_anaplastic_pleomorphic |
Association with transcript: | -14bp_to_ENST00000496298_5end |
EntrezGene: | USP40 |
HGNC: | 20069 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 4.91e-18 | 19 |
transitional epithelial cell | 3.52e-13 | 4 |
urothelial cell | 3.52e-13 | 4 |
extraembryonic cell | 6.20e-09 | 19 |
mesodermal cell | 6.72e-09 | 121 |
embryonic cell | 8.69e-09 | 250 |
vascular associated smooth muscle cell | 2.00e-08 | 32 |
glandular epithelial cell | 3.42e-08 | 9 |
cortical cell of adrenal gland | 7.36e-08 | 2 |
epithelial cell | 8.09e-08 | 253 |
smooth muscle cell of the umbilical vein | 6.30e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
urothelium | 3.99e-16 | 5 |
transitional epithelium | 2.27e-13 | 6 |
multilaminar epithelium | 4.75e-08 | 83 |
chorion | 3.71e-07 | 7 |
extraembryonic membrane | 4.29e-07 | 14 |
membranous layer | 4.29e-07 | 14 |
extraembryonic structure | 8.71e-07 | 24 |