FFCP PHASE1:Hg19::chr1:95582446..95582458,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:95582446..95582458,+
|short_description=p5@TMEM56
|description=CAGE_peak_5_at_TMEM56_5end
|association_with_transcript=-435bp_to_ENST00000370203,NM_152487,...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=148534 | |EntrezGene=148534 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26477 | |HGNC=26477 | ||
|TSSclassifier=strong | |||
|UniProt=Q96MV1 | |UniProt=Q96MV1 | ||
|association_with_transcript=-435bp_to_ENST00000370203,NM_152487,uc001drb.2_5end | |||
|cluster_id=chr1:95582446..95582458,+ | |||
|coexpression_cluster_id=C33 | |||
|description=CAGE_peak_5_at_TMEM56_5end | |||
|id=chr1:95582446..95582458,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000764;9.14e-22;2!CL:0000558;9.14e-22;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,9.15e-22,2;CL:0000765,9.15e-22,2;CL:0000050,9.15e-22,2;CL:0000038,9.15e-22,2;CL:0000558,9.15e-22,2;CL:0000547,9.15e-22,2;CL:0000549,9.15e-22,2;CL:0000550,9.15e-22,2;CL:0000552,9.15e-22,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!7.95e-10!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.89e-30!115;UBERON:0002619!1.72e-14!22;UBERON:0001893!2.13e-14!34;UBERON:0001869!2.59e-14!32;UBERON:0001950!3.43e-14!20;UBERON:0003075!1.32e-13!86;UBERON:0007284!1.32e-13!86;UBERON:0002780!1.78e-13!41;UBERON:0001890!1.78e-13!41;UBERON:0006240!1.78e-13!41;UBERON:0002791!2.34e-13!33;UBERON:0001049!4.87e-13!57;UBERON:0005068!4.87e-13!57;UBERON:0006241!4.87e-13!57;UBERON:0007135!4.87e-13!57;UBERON:0003080!5.35e-13!42;UBERON:0005743!8.98e-13!86;UBERON:0000955!1.08e-12!69;UBERON:0006238!1.08e-12!69;UBERON:0002346!1.57e-12!90;UBERON:0000956!3.03e-12!25;UBERON:0000203!3.03e-12!25;UBERON:0001017!6.68e-12!82;UBERON:0002020!1.27e-11!34;UBERON:0003528!1.27e-11!34;UBERON:0003056!2.86e-11!61;UBERON:0002616!3.47e-11!59;UBERON:0000073!1.27e-10!94;UBERON:0001016!1.27e-10!94;UBERON:0000200!4.86e-10!6;UBERON:0009497!2.60e-09!25;UBERON:0000015!2.60e-09!25;UBERON:0002423!2.60e-09!25;UBERON:0006235!2.60e-09!25;UBERON:0004161!2.60e-09!25;UBERON:0000153!1.63e-08!129;UBERON:0007811!1.63e-08!129;UBERON:0008835!2.66e-08!22;UBERON:0003894!2.66e-08!22;UBERON:0000033!3.26e-08!123;UBERON:0007499!4.00e-08!25;UBERON:0009854!8.48e-08!23;UBERON:0009856!1.12e-07!26;UBERON:0002107!2.48e-07!19;UBERON:0006925!2.48e-07!19;UBERON:0008836!2.48e-07!19;UBERON:0005172!2.89e-07!55;UBERON:0005173!2.89e-07!55;UBERON:0001737!3.99e-07!9;UBERON:0001871!4.92e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001870;4.72e-14;3!UBERON:0000178;5.34e-11;15!UBERON:0000179;5.34e-11;15!UBERON:0000463;5.34e-11;15!UBERON:0002107;8.10e-09;19!UBERON:0006925;8.10e-09;19!UBERON:0002423;9.84e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001870,6.16e-14,3;UBERON:0000178,5.07e-11,15;UBERON:0000179,5.07e-11,15;UBERON:0000463,5.07e-11,15;UBERON:0002107,7.78e-09,19;UBERON:0006925,7.78e-09,19;UBERON:0008836,7.78e-09,19;UBERON:0008835,1.19e-07,22;UBERON:0003894,1.19e-07,22;UBERON:0007023,2.03e-07,114;UBERON:0009854,2.53e-07,23;UBERON:0007499,9.55e-07,25;UBERON:0009497,9.55e-07,25;UBERON:0000015,9.55e-07,25;UBERON:0002423,9.55e-07,25;UBERON:0006235,9.55e-07,25;UBERON:0004161,9.55e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0.121973706129595,0,0.464775771478074,0,0.252320850875628,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0.241011029883482,0.110293972732394,0.653638332277218,1.42362371466658,0.404493924480493,0,0,0,0,0,0,2.53510069643662,0,3.54473944008842,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0.254876273045038,0,0,11.4015135855886,12.2874661981703,0.256450125116389,0,0,0.515205058238611,0.0915694648183434,0.165018999841176,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,2.53723804616085,3.0585488285695,2.27858874869665,0.952927101831156,0.411362273086194,0,1.62009431171434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,0.37428108081644,0,0.121360521749513,0,0,0,0,0,1.9882952955326,0.703347082052564,0,0,0,0.398495976502139,0,0,0.102268682502155,0.123084805461069,0,0.179736702294654,0,0,0.0986434056369336,0,0,0.969332746095218,0.74214478529481,0,0,0.0874599999961957,0,0,0.254253650292766,0,1.03423011972439,0.291604613383254,0.173624994933292,0,0.482385754501632,1.52581736317083,0.442317039724898,0,0.219385397153973,0,0,0,0.455768223388005,0,0,0,0,0,0,0,0,0,1.35357396370308,0.980312671588698,1.1747511088309,0.948768663620925,0.476809736941136,0.210998064528027,0.163232808159148,0.141353071433941,0.216388639742091,0.995261931078505,0.265372693510018,0,0.296521128680622,0,0.104421949505455,0.067401132980677,0,0.468528891450678,0,0,0,0.789168805698781,0,0,0.252746318513952,0.150323419414493,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0.290268993867255,0.292357268344742,0.0821154570532092,0,0,0.451961481561065,0,0,1.32952671507345,0,0.160317640503067,0.213452994739353,0,0,0,0.686379991447858,0,0,0,0,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0.446342914883745,0.134366944973453,0,0,0.315132729228895,0.164831716762333,0.13480708770837,0.295282444544246,0,0,0.544813624446302,0,0,0,0,0,0.850493793212345,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78449243988357,3.97520666736664,0,0,0.342173675768659,0,0,0,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0.886068179966986,0.732157589411779,1.1267183763585,0,0,0.0620964029413835,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0.453411851024545,0,0,0,0,0,0,0.192914038270915,0,0.512483037175893,0,0,0.691292180758654,0,0,0,0,0.737318726261158,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.319267718114302,0,0.504143392443436,0.622415272177961,0.322951291263702,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0.607838261565552,0,0.620060389503552,0.443910671357348,0,0.548257766857182,0,0,0,0,0,0,0,0.354809480650555,0,0.171488009437418,0.339848664884159,0.657727735628491,0.236387681767936,0,0,0.314231179832004,0,0,0.647782773655864,0.47775168788705,0.78624198594322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0.594092800654172,0,0,0,0.257831551894309,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.535928260312357,0,0.20686599172379,0.213233981900981,0.23806443146374,0,0,0,0.190941474834495,0,0,0,0,0.215166616178029,0,0.0814032686109745,0.213454691755431,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0.121973706129595,0,0.464775771478074,0,0.252320850875628,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0.241011029883482,0.110293972732394,0.653638332277218,1.42362371466658,0.404493924480493,0,0,0,0,0,0,2.53510069643662,0,3.54473944008842,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0.254876273045038,0,0,11.4015135855886,12.2874661981703,0.256450125116389,0,0,0.515205058238611,0.0915694648183434,0.165018999841176,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,2.53723804616085,3.0585488285695,2.27858874869665,0.952927101831156,0.411362273086194,0,1.62009431171434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,0.37428108081644,0,0.121360521749513,0,0,0,0,0,1.9882952955326,0.703347082052564,0,0,0,0.398495976502139,0,0,0.102268682502155,0.123084805461069,0,0.179736702294654,0,0,0.0986434056369336,0,0,0.969332746095218,0.74214478529481,0,0,0.0874599999961957,0,0,0.254253650292766,0,1.03423011972439,0.291604613383254,0.173624994933292,0,0.482385754501632,1.52581736317083,0.442317039724898,0,0.219385397153973,0,0,0,0.455768223388005,0,0,0,0,0,0,0,0,0,1.35357396370308,0.980312671588698,1.1747511088309,0.948768663620925,0.476809736941136,0.210998064528027,0.163232808159148,0.141353071433941,0.216388639742091,0.995261931078505,0.265372693510018,0,0.296521128680622,0,0.104421949505455,0.067401132980677,0,0.468528891450678,0,0,0,0.789168805698781,0,0,0.252746318513952,0.150323419414493,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0.290268993867255,0.292357268344742,0.0821154570532092,0,0,0.451961481561065,0,0,1.32952671507345,0,0.160317640503067,0.213452994739353,0,0,0,0.686379991447858,0,0,0,0,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0.446342914883745,0.134366944973453,0,0,0.315132729228895,0.164831716762333,0.13480708770837,0.295282444544246,0,0,0.544813624446302,0,0,0,0,0,0.850493793212345,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78449243988357,3.97520666736664,0,0,0.342173675768659,0,0,0,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0.886068179966986,0.732157589411779,1.1267183763585,0,0,0.0620964029413835,0,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0.453411851024545,0,0,0,0,0,0,0.192914038270915,0,0.512483037175893,0,0,0.691292180758654,0,0,0,0,0.737318726261158,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.319267718114302,0,0.504143392443436,0.622415272177961,0.322951291263702,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0.607838261565552,0,0.620060389503552,0.443910671357348,0,0.548257766857182,0,0,0,0,0,0,0,0.354809480650555,0,0.171488009437418,0.339848664884159,0.657727735628491,0.236387681767936,0,0,0.314231179832004,0,0,0.647782773655864,0.47775168788705,0.78624198594322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0.594092800654172,0,0,0,0.257831551894309,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.535928260312357,0,0.20686599172379,0.213233981900981,0.23806443146374,0,0,0,0.190941474834495,0,0,0,0,0.215166616178029,0,0.0814032686109745,0.213454691755431,0,0,0,0,0,0,0,0 | ||
|short_description=p5@TMEM56 | |||
}} | }} |
Latest revision as of 23:48, 19 September 2015
Short description: | p5@TMEM56 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TMEM56_5end |
Coexpression cluster: | C33_Reticulocytes_liver_Whole_blood_chronic_acute_spleen |
Association with transcript: | -435bp_to_ENST00000370203, NM_152487, uc001drb.2_5end |
EntrezGene: | TMEM56 |
HGNC: | 26477 |
UniProt: | Q96MV1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 9.15e-22 | 2 |
erythroblast | 9.15e-22 | 2 |
megakaryocyte-erythroid progenitor cell | 9.15e-22 | 2 |
erythroid progenitor cell | 9.15e-22 | 2 |
reticulocyte | 9.15e-22 | 2 |
proerythroblast | 9.15e-22 | 2 |
basophilic erythroblast | 9.15e-22 | 2 |
polychromatophilic erythroblast | 9.15e-22 | 2 |
orthochromatic erythroblast | 9.15e-22 | 2 |
Ontology term | p-value | n |
---|---|---|
frontal cortex | 6.16e-14 | 3 |
blood | 5.07e-11 | 15 |
haemolymphatic fluid | 5.07e-11 | 15 |
organism substance | 5.07e-11 | 15 |
liver | 7.78e-09 | 19 |
digestive gland | 7.78e-09 | 19 |
liver bud | 7.78e-09 | 19 |
hepatic diverticulum | 1.19e-07 | 22 |
liver primordium | 1.19e-07 | 22 |
adult organism | 2.03e-07 | 114 |
digestive tract diverticulum | 2.53e-07 | 23 |
epithelial sac | 9.55e-07 | 25 |
epithelium of foregut-midgut junction | 9.55e-07 | 25 |
anatomical boundary | 9.55e-07 | 25 |
hepatobiliary system | 9.55e-07 | 25 |
foregut-midgut junction | 9.55e-07 | 25 |
septum transversum | 9.55e-07 | 25 |