FFCP PHASE1:Hg19::chr19:20216874..20216879,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:20216874..20216879,+ | |||
|coexpression_cluster_id=C1240 | |coexpression_cluster_id=C1240 | ||
|description=CAGE_peak_at_chr19:20216874..20216879,+ | |description=CAGE_peak_at_chr19:20216874..20216879,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.57e-20;5!CL:0000039;3.87e-15;7!CL:0000586;3.87e-15;7!CL:0000540;1.67e-08;6!CL:0000404;1.67e-08;6!CL:0002321;3.25e-07;15 | |ontology_enrichment_celltype_v019=CL:0002322;1.57e-20;5!CL:0000039;3.87e-15;7!CL:0000586;3.87e-15;7!CL:0000540;1.67e-08;6!CL:0000404;1.67e-08;6!CL:0002321;3.25e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.53e-20,5;CL:0000039,3.44e-15,7;CL:0000586,3.44e-15,7;CL:0000540,1.74e-08,6;CL:0000031,1.74e-08,6;CL:0000404,1.74e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0005754;2.60e-12;1!CL:0000031;1.67e-08;6!UBERON:0007297;8.76e-07;2 | |ontology_enrichment_development_v019=UBERON:0005754;2.60e-12;1!CL:0000031;1.67e-08;6!UBERON:0007297;8.76e-07;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:6193;2.60e-12;1!DOID:3350;8.76e-07;2 | |ontology_enrichment_disease_v019=DOID:6193;2.60e-12;1!DOID:3350;8.76e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:6193,4.31e-12,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.55e-13;8!UBERON:0000998;2.60e-12;1!UBERON:0006868;2.60e-12;1!UBERON:0003135;7.73e-10;11 | |ontology_enrichment_uberon_v019=UBERON:0000473;2.55e-13;8!UBERON:0000998;2.60e-12;1!UBERON:0006868;2.60e-12;1!UBERON:0003135;7.73e-10;11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.71e-13,8;UBERON:0000998,3.08e-12,1;UBERON:0006868,3.08e-12,1;UBERON:0003135,8.10e-10,11 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.572471974262113,0.684372125364421,0.753255837568817,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0.30120591877825,0,0.46480320348181,0,0.587200878669695,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0.574752439954483,0,0,0,0,0.382273228125229,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0.821127996921047,0,0,0.144824403882799,0,0,0,0,0,0.289693037921647,0,0,0.283604451492204,0.221729397462564,0.175669571386252,0.130979075497713,0,0,0,0.348259474598534,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0.12663051166458,0.397227542439656,0.286836620748814,0,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0,0.312160076830321,0,0,0.117434498643765,0.323745888736263,0.140450806702248,0.204154171254893,0.368502951935304,0.103325781175765,0,0,0,0,0.505008341862199,0.500474079487857,0,0,0,0,0.113432183160021,0.358779271377724,0,0,0.600182192168805,0,0,0,0.337552664482532,0,0,0,0,0,0.10075209822764,0,0,0,0.286804595389004,2.19552671033272,0.662648841607426,1.39432731443422,0.310983165046111,1.51392510525377,2.91981887260664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0.207328115540772,0,0.37872730027914,0.126995788584338,0,0,0,0.205654985406647,0,0.285826432630578,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234282829985426,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0.0920809889358963,0.114814448164607,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0,0,0,0,0,0,0,0,0.460511024178389,0,0.214840489736547,0,0.511359764496605,0,0.165284915360978,0.192190067365106,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539617372749944,0,0.353437207037059,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640276590135727,0,1.59663497146253,0.191505370132367,1.05836791361941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,1.4098700508785,0,0,0,0.445773537109913,0,0,0,0,0,0.140669416410513,0,0,0.422250816255987,0,0,0.503865495708552,0.102268682502155,0,0,0,0,0,0.197286811273867,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0.689486746482929,0,0.347249989866585,0,0.120596438625408,0,0.331737779793674,0.295547618953547,0,0,0,0.384751292518985,0.227884111694002,0.922255617552241,0,1.52106320690811,0,0.0915975934018623,0.533034776018635,1.02193298195737,0.156980256395025,0,0.225595660617181,0,0,0,0.158936578980379,0,0.163232808159148,0.141353071433941,0,0.995261931078505,0,0,0,0,0,0.337005664903385,0,0,0.182454789215666,0,0,0.789168805698781,0,0,0.189559738885464,0,0,0,0,0,0,0.853828638089378,0,0,0,0,0,1.0319161948297,0,0,0,0,0.353024506766001,0,0,0.19871461170299,0,0.782205530939212,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0.305994652908965,0,0,0.410716136675979,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.247247575143499,0.471824806979294,0,0,0,0.544813624446302,2.73280352390533,2.06309154895851,0.83088067605837,0,0,0,0,0.0788057072991982,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0.328370082997356,0,0,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0.496166021811951,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0.260994291965212,0.453411851024545,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0.132864840313363,1.79921933681429,0.327609848846413,0,0,0,0,0,0,0,0,0,0.383683113910955,0,0.157265941855896,0.109209638192014,0.509197589862076,0,0.619678821295011,0,0,0.552032215008773,0,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.225630985047772,0.40341013740704,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,0.118193840883968,0,0.313972371402056,0,0,0,0.215927591218621,0.47775168788705,0.428859265059938,0.790068058663633,0,0,0,0,0.51215543128185,0,0.430227358820278,0.354996002191696,0.340853619036631,1.27016115057279,0,0,0.955538938977433,0,0.098150233615243,0,0,0,0,0.485710993059139,0,0.198950775161368,1.07028081699812,0,0,0.150962843566674,0.231522474323834,0.218559560503957,0,0.490296643507811,0,0.196308467114945,0,0.4226557275834,0,0.0939839179798536,0.257831551894309,0.699588091474503,0,0,0,0,0,0.286679166302903,0,0,0,0.5290268405154,0,0,0,0,0.546327859818478,0,3.46762021122738,0.26721740526556,3.6757959813938,0.250707539292375,0,0.267964130156178,0,0.310298987585686,0,0.476128862927481,0.0645889098360061,0.434523000071005,0.448527450322454,0.509177266225319,0.606351566874658,0,0,0.134704106029175,0.0717222053926763,0,0.162806537221949,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.572471974262113,0.684372125364421,0.753255837568817,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0.30120591877825,0,0.46480320348181,0,0.587200878669695,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0.574752439954483,0,0,0,0,0.382273228125229,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0.821127996921047,0,0,0.144824403882799,0,0,0,0,0,0.289693037921647,0,0,0.283604451492204,0.221729397462564,0.175669571386252,0.130979075497713,0,0,0,0.348259474598534,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0.12663051166458,0.397227542439656,0.286836620748814,0,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0,0.312160076830321,0,0,0.117434498643765,0.323745888736263,0.140450806702248,0.204154171254893,0.368502951935304,0.103325781175765,0,0,0,0,0.505008341862199,0.500474079487857,0,0,0,0,0.113432183160021,0.358779271377724,0,0,0.600182192168805,0,0,0,0.337552664482532,0,0,0,0,0,0.10075209822764,0,0,0,0.286804595389004,2.19552671033272,0.662648841607426,1.39432731443422,0.310983165046111,1.51392510525377,2.91981887260664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0.207328115540772,0,0.37872730027914,0.126995788584338,0,0,0,0.205654985406647,0,0.285826432630578,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234282829985426,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0.0920809889358963,0.114814448164607,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0,0,0,0,0,0,0,0,0.460511024178389,0,0.214840489736547,0,0.511359764496605,0,0.165284915360978,0.192190067365106,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539617372749944,0,0.353437207037059,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.640276590135727,0,1.59663497146253,0.191505370132367,1.05836791361941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,1.4098700508785,0,0,0,0.445773537109913,0,0,0,0,0,0.140669416410513,0,0,0.422250816255987,0,0,0.503865495708552,0.102268682502155,0,0,0,0,0,0.197286811273867,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0.689486746482929,0,0.347249989866585,0,0.120596438625408,0,0.331737779793674,0.295547618953547,0,0,0,0.384751292518985,0.227884111694002,0.922255617552241,0,1.52106320690811,0,0.0915975934018623,0.533034776018635,1.02193298195737,0.156980256395025,0,0.225595660617181,0,0,0,0.158936578980379,0,0.163232808159148,0.141353071433941,0,0.995261931078505,0,0,0,0,0,0.337005664903385,0,0,0.182454789215666,0,0,0.789168805698781,0,0,0.189559738885464,0,0,0,0,0,0,0.853828638089378,0,0,0,0,0,1.0319161948297,0,0,0,0,0.353024506766001,0,0,0.19871461170299,0,0.782205530939212,0,0,0.39961921916426,0,0,0,0,0,0,0,0,0.305994652908965,0,0,0.410716136675979,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.247247575143499,0.471824806979294,0,0,0,0.544813624446302,2.73280352390533,2.06309154895851,0.83088067605837,0,0,0,0,0.0788057072991982,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0.328370082997356,0,0,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0.496166021811951,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0.124980407962107,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0.300515217994437,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0.260994291965212,0.453411851024545,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0.132864840313363,1.79921933681429,0.327609848846413,0,0,0,0,0,0,0,0,0,0.383683113910955,0,0.157265941855896,0.109209638192014,0.509197589862076,0,0.619678821295011,0,0,0.552032215008773,0,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.225630985047772,0.40341013740704,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,0.118193840883968,0,0.313972371402056,0,0,0,0.215927591218621,0.47775168788705,0.428859265059938,0.790068058663633,0,0,0,0,0.51215543128185,0,0.430227358820278,0.354996002191696,0.340853619036631,1.27016115057279,0,0,0.955538938977433,0,0.098150233615243,0,0,0,0,0.485710993059139,0,0.198950775161368,1.07028081699812,0,0,0.150962843566674,0.231522474323834,0.218559560503957,0,0.490296643507811,0,0.196308467114945,0,0.4226557275834,0,0.0939839179798536,0.257831551894309,0.699588091474503,0,0,0,0,0,0.286679166302903,0,0,0,0.5290268405154,0,0,0,0,0.546327859818478,0,3.46762021122738,0.26721740526556,3.6757959813938,0.250707539292375,0,0.267964130156178,0,0.310298987585686,0,0.476128862927481,0.0645889098360061,0.434523000071005,0.448527450322454,0.509177266225319,0.606351566874658,0,0,0.134704106029175,0.0717222053926763,0,0.162806537221949,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr19:20216874..20216879,+ | |short_description=p@chr19:20216874..20216879,+ | ||
}} | }} |
Latest revision as of 05:35, 26 July 2015
Short description: | p@chr19:20216874..20216879, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:20216874..20216879, + |
Coexpression cluster: | C1240_testicular_iPS_HES3GFP_H9_teratocarcinoma_non_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.53e-20 | 5 |
germ line cell | 3.44e-15 | 7 |
germ cell | 3.44e-15 | 7 |
neuron | 1.74e-08 | 6 |
neuroblast | 1.74e-08 | 6 |
electrically signaling cell | 1.74e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
testis | 2.71e-13 | 8 |
seminal vesicle | 3.08e-12 | 1 |
seminal fluid secreting gland | 3.08e-12 | 1 |
male reproductive organ | 8.10e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 4.31e-12 | 1 |