FFCP PHASE1:Hg19::chr20:61404383..61404401,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:61404383..61404401,- | |||
|coexpression_cluster_id=C63 | |coexpression_cluster_id=C63 | ||
|description=CAGE_peak_at_chr20:61404383..61404401,- | |description=CAGE_peak_at_chr20:61404383..61404401,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002178;1.19e-09;3!CL:0000515;1.60e-09;3!CL:0002321;1.59e-07;15!CL:0000056;1.86e-07;4 | |ontology_enrichment_celltype_v019=CL:0002178;1.19e-09;3!CL:0000515;1.60e-09;3!CL:0002321;1.59e-07;15!CL:0000056;1.86e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.19e-09,3;CL:0000515,1.69e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0005754;8.64e-26;1!UBERON:0007297;1.29e-13;2!CL:0000515;1.86e-07;4 | |ontology_enrichment_development_v019=UBERON:0005754;8.64e-26;1!UBERON:0007297;1.29e-13;2!CL:0000515;1.86e-07;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;5.33e-23;10!DOID:3119;1.17e-16;14!DOID:3493;8.28e-14;2!DOID:3095;7.29e-11;22!DOID:2994;7.29e-11;22 | |ontology_enrichment_disease_v019=DOID:171;5.33e-23;10!DOID:3119;1.17e-16;14!DOID:3493;8.28e-14;2!DOID:3095;7.29e-11;22!DOID:2994;7.29e-11;22 | ||
|ontology_enrichment_disease_v019_2=DOID:171,5.53e-23,10;DOID:3119,1.26e-16,14;DOID:3493,8.28e-14,2;DOID:3095,7.41e-11,22;DOID:2994,7.41e-11,22 | |||
|ontology_enrichment_uberon=UBERON:0000924!1.36e-08!173;UBERON:0006601!1.36e-08!173;UBERON:0001049!3.04e-08!57;UBERON:0005068!3.04e-08!57;UBERON:0006241!3.04e-08!57;UBERON:0007135!3.04e-08!57;UBERON:0002791!3.93e-08!33;UBERON:0002346!5.26e-08!90;UBERON:0002020!7.01e-08!34;UBERON:0003528!7.01e-08!34;UBERON:0002616!7.16e-08!59;UBERON:0001893!7.57e-08!34;UBERON:0000033!8.83e-08!123;UBERON:0000955!2.98e-07!69;UBERON:0006238!2.98e-07!69;UBERON:0000153!3.32e-07!129;UBERON:0007811!3.32e-07!129;UBERON:0004121!3.38e-07!169;UBERON:0001950!3.49e-07!20;UBERON:0007023!4.34e-07!115;UBERON:0001869!7.17e-07!32 | |ontology_enrichment_uberon=UBERON:0000924!1.36e-08!173;UBERON:0006601!1.36e-08!173;UBERON:0001049!3.04e-08!57;UBERON:0005068!3.04e-08!57;UBERON:0006241!3.04e-08!57;UBERON:0007135!3.04e-08!57;UBERON:0002791!3.93e-08!33;UBERON:0002346!5.26e-08!90;UBERON:0002020!7.01e-08!34;UBERON:0003528!7.01e-08!34;UBERON:0002616!7.16e-08!59;UBERON:0001893!7.57e-08!34;UBERON:0000033!8.83e-08!123;UBERON:0000955!2.98e-07!69;UBERON:0006238!2.98e-07!69;UBERON:0000153!3.32e-07!129;UBERON:0007811!3.32e-07!129;UBERON:0004121!3.38e-07!169;UBERON:0001950!3.49e-07!20;UBERON:0007023!4.34e-07!115;UBERON:0001869!7.17e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;6.73e-26;4!UBERON:0000923;6.73e-26;4!UBERON:0010316;6.73e-26;4!UBERON:0005291;6.73e-26;4!UBERON:0000998;8.64e-26;1!UBERON:0006868;8.64e-26;1!UBERON:0002050;6.01e-21;5!UBERON:0005423;6.01e-21;5!UBERON:0006947;1.60e-09;3!UBERON:0004054;1.60e-09;3!UBERON:0005904;1.86e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0002346;6.73e-26;4!UBERON:0000923;6.73e-26;4!UBERON:0010316;6.73e-26;4!UBERON:0005291;6.73e-26;4!UBERON:0000998;8.64e-26;1!UBERON:0006868;8.64e-26;1!UBERON:0002050;6.01e-21;5!UBERON:0005423;6.01e-21;5!UBERON:0006947;1.60e-09;3!UBERON:0004054;1.60e-09;3!UBERON:0005904;1.86e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000998,7.62e-26,1;UBERON:0006868,7.62e-26,1;UBERON:0006947,1.54e-09,3;UBERON:0004054,1.54e-09,3;UBERON:0005904,1.80e-07,4 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402115889646523,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43833425785268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0.557216921387392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03423011972439,14.871835282546,0,0,0,0,0,0,0,0.21787692703798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.50648636764703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0.110929051536852,0.0620964029413835,0.138348634936231,0,0,0,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25812753484717,0,0,0,16.3595208821883,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,5.9796223082271,0,0,0,0,0,0,0,0,0,0.263091094251396,0,0,0,0.157115589916002,0,0,0.215927591218621,0,0.285906176706625,0,0,0,0,0.207216164163037,0,0,0,0,0,1.27016115057279,0,0,0,0,12.7595303699816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0.407948941145488,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404234377916439,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402115889646523,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43833425785268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0.557216921387392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03423011972439,14.871835282546,0,0,0,0,0,0,0,0.21787692703798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.50648636764703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0.110929051536852,0.0620964029413835,0.138348634936231,0,0,0,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25812753484717,0,0,0,16.3595208821883,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,5.9796223082271,0,0,0,0,0,0,0,0,0,0.263091094251396,0,0,0,0.157115589916002,0,0,0.215927591218621,0,0.285906176706625,0,0,0,0,0.207216164163037,0,0,0,0,0,1.27016115057279,0,0,0,0,12.7595303699816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0.407948941145488,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404234377916439,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr20:61404383..61404401,- | |short_description=p@chr20:61404383..61404401,- | ||
}} | }} |
Latest revision as of 16:12, 28 July 2015
Short description: | p@chr20:61404383..61404401, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:61404383..61404401, - |
Coexpression cluster: | C63_neuroectodermal_neuroblastoma_carcinoid_peripheral_chronic_neuroepithelioma_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.19e-09 | 3 |
skeletal muscle myoblast | 1.69e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
seminal vesicle | 7.62e-26 | 1 |
seminal fluid secreting gland | 7.62e-26 | 1 |
male genital duct | 1.54e-09 | 3 |
internal male genitalia | 1.54e-09 | 3 |
duct of male reproductive system | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 5.53e-23 | 10 |
gastrointestinal system cancer | 1.26e-16 | 14 |
signet ring cell adenocarcinoma | 8.28e-14 | 2 |
germ cell and embryonal cancer | 7.41e-11 | 22 |
germ cell cancer | 7.41e-11 | 22 |