FFCP PHASE1:Hg19::chr20:58508734..58508739,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:58508734..58508739,-
|short_description=p8@SYCP2
|description=CAGE_peak_8_at_SYCP2_5end
|association_with_transcript=-24bp_to_ENST00000357552,ENST00000425...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10388 | |EntrezGene=10388 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11490 | |HGNC=11490 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BX26,A2A2M9 | |UniProt=Q9BX26,A2A2M9 | ||
|association_with_transcript=-24bp_to_ENST00000357552,ENST00000425931_5end | |||
|cluster_id=chr20:58508734..58508739,- | |||
|description=CAGE_peak_8_at_SYCP2_5end | |||
|id=chr20:58508734..58508739,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:1000415;1.50e-08;2!CL:0002535;2.31e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,1.39e-08,2;CL:0002535,2.67e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;9.90e-07;10!UBERON:0005564;9.90e-07;10 | |||
|ontology_enrichment_disease=DOID:0050687!1.03e-10!143;DOID:305!1.45e-10!106;DOID:162!6.04e-09!235;DOID:14566!1.81e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:4468;2.21e-29;2!DOID:6193;2.06e-15;1!DOID:299;1.96e-09;25!DOID:1325;5.37e-09;7!DOID:3904;5.37e-09;7!DOID:3350;2.31e-08;2!DOID:4929;2.31e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,4.55e-29,2;DOID:6193,1.16e-15,1;DOID:305,2.54e-12,106;DOID:0050687,7.90e-11,143;DOID:299,2.03e-09,25;DOID:1325,4.95e-09,7;DOID:3904,4.95e-09,7;DOID:3350,1.73e-08,2;DOID:4929,1.86e-08,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004913;2.06e-15;1!UBERON:0003703;2.06e-15;1!UBERON:0001174;2.06e-15;1!UBERON:0004914;2.06e-15;1!UBERON:0002294;4.21e-09;7!UBERON:0001173;4.21e-09;7!UBERON:0006955;2.31e-08;2!UBERON:0004801;2.31e-08;2!UBERON:0000473;3.32e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,1.34e-15,1;UBERON:0003703,1.34e-15,1;UBERON:0001174,1.34e-15,1;UBERON:0004914,1.34e-15,1;UBERON:0006955,2.67e-08,2;UBERON:0004801,2.67e-08,2;UBERON:0000473,3.38e-08,8;UBERON:0002294,2.52e-07,9;UBERON:0001173,2.52e-07,9;UBERON:0004912,2.52e-07,9 | |||
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| ||
|short_description=p8@SYCP2 | |||
}} | }} |
Latest revision as of 08:13, 17 September 2015
Short description: | p8@SYCP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SYCP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -24bp_to_ENST00000357552, ENST00000425931_5end |
EntrezGene: | SYCP2 |
HGNC: | 11490 |
UniProt: | Q9BX26A2A2M9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 1.39e-08 | 2 |
epithelial cell of cervix | 2.67e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 1.34e-15 | 1 |
extrahepatic bile duct | 1.34e-15 | 1 |
common bile duct | 1.34e-15 | 1 |
duodenal papilla | 1.34e-15 | 1 |
uterine epithelium | 2.67e-08 | 2 |
cervix epithelium | 2.67e-08 | 2 |
testis | 3.38e-08 | 8 |
biliary system | 2.52e-07 | 9 |
biliary tree | 2.52e-07 | 9 |
biliary bud | 2.52e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 4.55e-29 | 2 |
epithelioid sarcoma | 1.16e-15 | 1 |
carcinoma | 2.54e-12 | 106 |
cell type cancer | 7.90e-11 | 143 |
adenocarcinoma | 2.03e-09 | 25 |
bronchus cancer | 4.95e-09 | 7 |
bronchogenic carcinoma | 4.95e-09 | 7 |
mesenchymal cell neoplasm | 1.73e-08 | 2 |
tubular adenocarcinoma | 1.86e-08 | 2 |