FFCP PHASE1:Hg19::chr21:42798552..42798557,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4599 | |EntrezGene=4599 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7532 | |HGNC=7532 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=355bp_to_ENST00000478268_5end | |association_with_transcript=355bp_to_ENST00000478268_5end | ||
|cluster_id=chr21:42798552..42798557,+ | |||
|coexpression_cluster_id=C1244 | |coexpression_cluster_id=C1244 | ||
|description=CAGE_peak_17_at_MX1_5end | |description=CAGE_peak_17_at_MX1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002591;4.28e-19;1!CL:0002595;1.51e-15;5!CL:0002593;1.50e-10;2!CL:0002097;1.72e-10;2!CL:0000359;1.24e-09;32!CL:0000174;2.05e-07;3!CL:0002582;3.06e-07;3!CL:0000192;7.67e-07;43 | |ontology_enrichment_celltype_v019=CL:0002591;4.28e-19;1!CL:0002595;1.51e-15;5!CL:0002593;1.50e-10;2!CL:0002097;1.72e-10;2!CL:0000359;1.24e-09;32!CL:0000174;2.05e-07;3!CL:0002582;3.06e-07;3!CL:0000192;7.67e-07;43 | ||
|ontology_enrichment_celltype_v019_2=CL:0002591,4.69e-19,1;CL:0002595,1.40e-15,5;CL:0002593,1.43e-10,2;CL:0002097,1.72e-10,2;CL:0000359,2.01e-09,32;CL:0000174,2.05e-07,3;CL:0002582,3.35e-07,3;CL:0000192,4.43e-07,43;CL:0000514,4.43e-07,43 | |||
|ontology_enrichment_development_v019=CL:0000514;7.67e-07;43 | |ontology_enrichment_development_v019=CL:0000514;7.67e-07;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0003834;1.51e-15;5!UBERON:0001533;1.51e-15;5!UBERON:0003513;2.18e-11;7!UBERON:0002456;1.50e-10;2!UBERON:0000078;3.13e-10;2!UBERON:0002012;3.13e-10;2!UBERON:0008886;3.13e-10;2!UBERON:0002369;2.05e-07;3!UBERON:0001235;2.05e-07;3!UBERON:0006858;2.05e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0003834;1.51e-15;5!UBERON:0001533;1.51e-15;5!UBERON:0003513;2.18e-11;7!UBERON:0002456;1.50e-10;2!UBERON:0000078;3.13e-10;2!UBERON:0002012;3.13e-10;2!UBERON:0008886;3.13e-10;2!UBERON:0002369;2.05e-07;3!UBERON:0001235;2.05e-07;3!UBERON:0006858;2.05e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,1.40e-15,5;UBERON:0001533,1.40e-15,5;UBERON:0003513,2.07e-11,7;UBERON:0002456,1.43e-10,2;UBERON:0000078,3.27e-10,2;UBERON:0007497,3.27e-10,2;UBERON:0003643,3.27e-10,2;UBERON:0003504,3.27e-10,2;UBERON:0003469,3.27e-10,2;UBERON:0003496,3.27e-10,2;UBERON:0002012,3.27e-10,2;UBERON:0008886,3.27e-10,2;UBERON:0007303,3.27e-10,2;UBERON:0002061,3.27e-10,2;UBERON:0005432,3.27e-10,2;UBERON:0004363,3.27e-10,2;UBERON:0002369,2.05e-07,3;UBERON:0001235,2.05e-07,3;UBERON:0006858,2.05e-07,3;UBERON:0001637,3.04e-07,42;UBERON:0003509,3.04e-07,42;UBERON:0004572,3.04e-07,42;UBERON:0004145,3.16e-07,3 | |||
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| ||
|short_description=p17@MX1 | |short_description=p17@MX1 | ||
}} | }} |
Latest revision as of 13:16, 18 September 2015
Short description: | p17@MX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_MX1_5end |
Coexpression cluster: | C1244_Smooth_mesenchymal_Fibroblast_mesothelioma_gall_Melanocyte_meningioma |
Association with transcript: | 355bp_to_ENST00000478268_5end |
EntrezGene: | MX1 |
HGNC: | 7532 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 4.69e-19 | 1 |
smooth muscle cell of the subclavian artery | 1.40e-15 | 5 |
smooth muscle cell of the internal thoracic artery | 1.43e-10 | 2 |
cortical cell of adrenal gland | 1.72e-10 | 2 |
vascular associated smooth muscle cell | 2.01e-09 | 32 |
steroid hormone secreting cell | 2.05e-07 | 3 |
visceral preadipocyte | 3.35e-07 | 3 |
smooth muscle cell | 4.43e-07 | 43 |
smooth muscle myoblast | 4.43e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
thoracic segment blood vessel | 1.40e-15 | 5 |
subclavian artery | 1.40e-15 | 5 |
trunk blood vessel | 2.07e-11 | 7 |
internal thoracic artery | 1.43e-10 | 2 |
mixed ectoderm/mesoderm/endoderm-derived structure | 3.27e-10 | 2 |
developing epithelial placode | 3.27e-10 | 2 |
respiratory system arterial blood vessel | 3.27e-10 | 2 |
respiratory system blood vessel | 3.27e-10 | 2 |
respiratory system artery | 3.27e-10 | 2 |
head blood vessel | 3.27e-10 | 2 |
pulmonary artery | 3.27e-10 | 2 |
pulmonary vascular system | 3.27e-10 | 2 |
pharyngeal vasculature | 3.27e-10 | 2 |
truncus arteriosus | 3.27e-10 | 2 |
aortic sac | 3.27e-10 | 2 |
pharyngeal arch artery | 3.27e-10 | 2 |
adrenal gland | 2.05e-07 | 3 |
adrenal cortex | 2.05e-07 | 3 |
adrenal/interrenal gland | 2.05e-07 | 3 |
artery | 3.04e-07 | 42 |
arterial blood vessel | 3.04e-07 | 42 |
arterial system | 3.04e-07 | 42 |
outflow tract | 3.16e-07 | 3 |