FFCP PHASE1:Hg19::chr21:17566746..17566756,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr21:17566746..17566756,+
|short_description=p35@LINC00478
|description=CAGE_peak_35_at_LINC00478_5end
|association_with_transcript=-31bp_to_ENST00000445461_5e...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=1274 | |HGNC=1274 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-31bp_to_ENST00000445461_5end | |||
|cluster_id=chr21:17566746..17566756,+ | |||
|coexpression_cluster_id=C4067 | |||
|description=CAGE_peak_35_at_LINC00478_5end | |||
|id=chr21:17566746..17566756,+ | |||
|ontology_enrichment_celltype=CL:0002605!2.77e-08!3;CL:0002150!1.33e-07!3;CL:0000861!1.33e-07!3;CL:0000064!3.26e-07!3;CL:0005012!3.26e-07!3;CL:0000067!3.26e-07!3;CL:0002304!3.26e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002605;3.96e-66;3!CL:0002319;5.44e-30;25!CL:0000128;3.92e-29;7!CL:0000126;3.92e-29;7!CL:0000127;3.92e-29;7!CL:0000243;5.35e-27;15!CL:0000125;5.35e-27;15!CL:0000095;2.84e-24;17!CL:0000540;1.50e-09;6!CL:0000404;1.50e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,4.68e-66,3;CL:0002319,5.44e-30,25;CL:0000128,4.21e-29,7;CL:0000126,4.21e-29,7;CL:0000127,4.21e-29,7;CL:0002453,4.21e-29,7;CL:0000243,5.59e-27,15;CL:0000125,5.59e-27,15;CL:0000030,5.59e-27,15;CL:0000339,5.59e-27,15;CL:0000095,2.96e-24,17;CL:0000123,2.96e-24,17;CL:0000133,7.99e-14,59;CL:0000221,1.50e-11,72;CL:0000333,2.84e-11,41;CL:0000540,1.44e-09,6;CL:0000031,1.44e-09,6;CL:0000404,1.44e-09,6;CL:0000047,1.69e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000339;5.35e-27;15!CL:0000133;1.01e-10;59!CL:0000031;1.50e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!2.13e-14!9;UBERON:0001778!3.26e-07!3;UBERON:0001775!3.26e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;1.13e-08;25!UBERON:0000203;1.13e-08;25!UBERON:0003528;3.64e-07;34!UBERON:0002791;3.64e-07;32!UBERON:0002020;3.64e-07;34!UBERON:0001869;3.64e-07;32!UBERON:0001893;3.64e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.17e-10,81;UBERON:0001016,1.88e-09,89;UBERON:0000956,1.15e-08,25;UBERON:0000203,1.15e-08,25;UBERON:0000955,2.97e-07,68;UBERON:0006238,2.97e-07,68;UBERON:0002791,4.89e-07,32;UBERON:0001869,4.89e-07,32 | |||
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| ||
|short_description=p35@LINC00478 | |||
}} | }} |
Latest revision as of 19:37, 17 September 2015
Short description: | p35@LINC00478 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_35_at_LINC00478_5end |
Coexpression cluster: | C4067_medulloblastoma_Astrocyte_myeloma_embryonic_epitheloid_adrenal_Dendritic |
Association with transcript: | -31bp_to_ENST00000445461_5end |
EntrezGene: | NA |
HGNC: | 1274 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 4.68e-66 | 3 |
neural cell | 5.44e-30 | 25 |
oligodendrocyte | 4.21e-29 | 7 |
macroglial cell | 4.21e-29 | 7 |
astrocyte | 4.21e-29 | 7 |
oligodendrocyte precursor cell | 4.21e-29 | 7 |
glial cell (sensu Vertebrata) | 5.59e-27 | 15 |
glial cell | 5.59e-27 | 15 |
glioblast | 5.59e-27 | 15 |
glioblast (sensu Vertebrata) | 5.59e-27 | 15 |
neuron associated cell | 2.96e-24 | 17 |
neuron associated cell (sensu Vertebrata) | 2.96e-24 | 17 |
neurectodermal cell | 7.99e-14 | 59 |
ectodermal cell | 1.50e-11 | 72 |
migratory neural crest cell | 2.84e-11 | 41 |
neuron | 1.44e-09 | 6 |
neuroblast | 1.44e-09 | 6 |
electrically signaling cell | 1.44e-09 | 6 |
neuronal stem cell | 1.69e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.17e-10 | 81 |
nervous system | 1.88e-09 | 89 |
cerebral cortex | 1.15e-08 | 25 |
pallium | 1.15e-08 | 25 |
brain | 2.97e-07 | 68 |
future brain | 2.97e-07 | 68 |
regional part of telencephalon | 4.89e-07 | 32 |
cerebral hemisphere | 4.89e-07 | 32 |