FFCP PHASE1:Hg19::chr15:67357924..67357952,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4088 | |EntrezGene=4088 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |HGNC=6769 | ||
|TSSclassifier=strong | |||
|UniProt=P84022 | |UniProt=P84022 | ||
|association_with_transcript=-230bp_to_ENST00000327367,ENST00000535241_5end | |association_with_transcript=-230bp_to_ENST00000327367,ENST00000535241_5end | ||
|cluster_id=chr15:67357924..67357952,+ | |||
|description=CAGE_peak_2_at_SMAD3_5end | |description=CAGE_peak_2_at_SMAD3_5end | ||
|id=chr15:67357924..67357952,+ | |id=chr15:67357924..67357952,+ | ||
|ontology_enrichment_celltype=CL:0000222!1.78e-16!119;CL:0000213!4.14e-10!57;CL:0000215!4.14e-10!57;CL:1000497!1.07e-09!18;CL:0002518!1.07e-09!18;CL:0002078!1.82e-08!44;CL:1000449!2.16e-08!16;CL:0000183!1.03e-07!59;CL:1000507!1.76e-07!12;CL:1000494!1.76e-07!12;CL:0000076!9.00e-07!62 | |ontology_enrichment_celltype=CL:0000222!1.78e-16!119;CL:0000213!4.14e-10!57;CL:0000215!4.14e-10!57;CL:1000497!1.07e-09!18;CL:0002518!1.07e-09!18;CL:0002078!1.82e-08!44;CL:1000449!2.16e-08!16;CL:0000183!1.03e-07!59;CL:1000507!1.76e-07!12;CL:1000494!1.76e-07!12;CL:0000076!9.00e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:1000497;1.84e-09;17!CL:0002518;1.84e-09;17!CL:1000449;3.81e-08;15!CL:1000507;8.33e-07;10!CL:1000494;8.33e-07;10 | |ontology_enrichment_celltype_v019=CL:1000497;1.84e-09;17!CL:0002518;1.84e-09;17!CL:1000449;3.81e-08;15!CL:1000507;8.33e-07;10!CL:1000494;8.33e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.06e-17,121;CL:0000213,1.49e-10,58;CL:0000215,1.49e-10,58;CL:1000497,2.10e-09,17;CL:0002518,2.10e-09,17;CL:0002078,6.54e-09,45;CL:1000449,4.29e-08,15;CL:1000507,8.41e-07,10;CL:1000494,8.41e-07,10 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!2.91e-11!312;UBERON:0000490!3.09e-11!138;UBERON:0000483!6.23e-11!309;UBERON:0003914!1.05e-10!118;UBERON:0002049!1.81e-09!79;UBERON:0007798!1.81e-09!79;UBERON:0000477!2.26e-09!286;UBERON:0000481!2.55e-09!347;UBERON:0001008!1.44e-08!45;UBERON:0004211!2.16e-08!16;UBERON:0001285!2.16e-08!16;UBERON:0007684!2.16e-08!16;UBERON:0003220!2.16e-08!16;UBERON:0004208!2.16e-08!16;UBERON:0006554!2.40e-08!44;UBERON:0005256!4.74e-08!143;UBERON:0006555!5.69e-08!17;UBERON:0005103!5.69e-08!17;UBERON:0000083!5.69e-08!17;UBERON:0009201!5.69e-08!17;UBERON:0004819!5.69e-08!17;UBERON:0006553!5.69e-08!17;UBERON:0003074!5.69e-08!17;UBERON:0003060!5.69e-08!17;UBERON:0003064!8.61e-08!37;UBERON:0009773!1.76e-07!12;UBERON:0001231!1.76e-07!12;UBERON:0004810!1.76e-07!12;UBERON:0000055!4.42e-07!69;UBERON:0000080!6.07e-07!18;UBERON:0002120!6.07e-07!18;UBERON:0004875!6.07e-07!18;UBERON:0005721!6.07e-07!18;UBERON:0005754!6.07e-07!18;UBERON:0007297!6.07e-07!18;UBERON:0004111!8.86e-07!241 | |ontology_enrichment_uberon=UBERON:0000119!2.91e-11!312;UBERON:0000490!3.09e-11!138;UBERON:0000483!6.23e-11!309;UBERON:0003914!1.05e-10!118;UBERON:0002049!1.81e-09!79;UBERON:0007798!1.81e-09!79;UBERON:0000477!2.26e-09!286;UBERON:0000481!2.55e-09!347;UBERON:0001008!1.44e-08!45;UBERON:0004211!2.16e-08!16;UBERON:0001285!2.16e-08!16;UBERON:0007684!2.16e-08!16;UBERON:0003220!2.16e-08!16;UBERON:0004208!2.16e-08!16;UBERON:0006554!2.40e-08!44;UBERON:0005256!4.74e-08!143;UBERON:0006555!5.69e-08!17;UBERON:0005103!5.69e-08!17;UBERON:0000083!5.69e-08!17;UBERON:0009201!5.69e-08!17;UBERON:0004819!5.69e-08!17;UBERON:0006553!5.69e-08!17;UBERON:0003074!5.69e-08!17;UBERON:0003060!5.69e-08!17;UBERON:0003064!8.61e-08!37;UBERON:0009773!1.76e-07!12;UBERON:0001231!1.76e-07!12;UBERON:0004810!1.76e-07!12;UBERON:0000055!4.42e-07!69;UBERON:0000080!6.07e-07!18;UBERON:0002120!6.07e-07!18;UBERON:0004875!6.07e-07!18;UBERON:0005721!6.07e-07!18;UBERON:0005754!6.07e-07!18;UBERON:0007297!6.07e-07!18;UBERON:0004111!8.86e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.81e-08;15!UBERON:0004819;3.81e-08;15!UBERON:0001285;3.81e-08;15!UBERON:0007684;3.81e-08;15!UBERON:0006554;1.79e-07;30!UBERON:0001008;1.79e-07;30!UBERON:0004211;8.33e-07;10!UBERON:0009773;8.33e-07;10!UBERON:0001231;8.33e-07;10!UBERON:0004810;8.33e-07;10 | |ontology_enrichment_uberon_v019=UBERON:0006555;3.81e-08;15!UBERON:0004819;3.81e-08;15!UBERON:0001285;3.81e-08;15!UBERON:0007684;3.81e-08;15!UBERON:0006554;1.79e-07;30!UBERON:0001008;1.79e-07;30!UBERON:0004211;8.33e-07;10!UBERON:0009773;8.33e-07;10!UBERON:0001231;8.33e-07;10!UBERON:0004810;8.33e-07;10 | ||
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| ||
|short_description=p2@SMAD3 | |short_description=p2@SMAD3 | ||
}} | }} |
Latest revision as of 16:54, 18 September 2015
Short description: | p2@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMAD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -230bp_to_ENST00000327367, ENST00000535241_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | P84022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.06e-17 | 121 |
lining cell | 1.49e-10 | 58 |
barrier cell | 1.49e-10 | 58 |
kidney cell | 2.10e-09 | 17 |
kidney epithelial cell | 2.10e-09 | 17 |
meso-epithelial cell | 6.54e-09 | 45 |
epithelial cell of nephron | 4.29e-08 | 15 |
kidney tubule cell | 8.41e-07 | 10 |
nephron tubule epithelial cell | 8.41e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
cell layer | 6.24e-11 | 309 |
epithelium | 1.32e-10 | 306 |
epithelial tube | 1.82e-10 | 117 |
vasculature | 9.21e-10 | 78 |
vascular system | 9.21e-10 | 78 |
mesenchyme | 1.16e-09 | 160 |
entire embryonic mesenchyme | 1.16e-09 | 160 |
unilaminar epithelium | 1.66e-09 | 148 |
nephron epithelium | 4.29e-08 | 15 |
renal tubule | 4.29e-08 | 15 |
nephron tubule | 4.29e-08 | 15 |
nephron | 4.29e-08 | 15 |
uriniferous tubule | 4.29e-08 | 15 |
nephrogenic mesenchyme | 4.29e-08 | 15 |
excretory tube | 1.15e-07 | 16 |
kidney epithelium | 1.15e-07 | 16 |
vessel | 2.57e-07 | 68 |
nephron tubule epithelium | 8.41e-07 | 10 |