FFCP PHASE1:Hg19::chr2:56007040..56007060,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:56007040..56007060,+ | |||
|coexpression_cluster_id=C195 | |coexpression_cluster_id=C195 | ||
|description=CAGE_peak_at_chr2:56007040..56007060,+ | |description=CAGE_peak_at_chr2:56007040..56007060,+ | ||
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|ontology_enrichment_celltype=CL:0000066!1.01e-31!254;CL:0002076!7.90e-23!43;CL:0000223!3.83e-21!59;CL:0002251!3.31e-19!21;CL:0005020!3.25e-10!6;CL:0002138!3.25e-10!6;CL:0005022!3.25e-10!6;CL:0000220!9.53e-10!246;CL:0000076!9.67e-10!62;CL:0002321!1.43e-09!248;CL:0002166!1.75e-08!3;CL:0002621!2.23e-08!3;CL:0002623!2.89e-08!3;CL:0000063!8.05e-08!578 | |ontology_enrichment_celltype=CL:0000066!1.01e-31!254;CL:0002076!7.90e-23!43;CL:0000223!3.83e-21!59;CL:0002251!3.31e-19!21;CL:0005020!3.25e-10!6;CL:0002138!3.25e-10!6;CL:0005022!3.25e-10!6;CL:0000220!9.53e-10!246;CL:0000076!9.67e-10!62;CL:0002321!1.43e-09!248;CL:0002166!1.75e-08!3;CL:0002621!2.23e-08!3;CL:0002623!2.89e-08!3;CL:0000063!8.05e-08!578 | ||
|ontology_enrichment_celltype_v019=CL:0002621;1.14e-24;3!CL:0002251;1.32e-14;20!CL:0002076;4.25e-12;42!CL:0002535;1.97e-10;2!CL:0002166;2.25e-07;3!CL:0002623;2.97e-07;3 | |ontology_enrichment_celltype_v019=CL:0002621;1.14e-24;3!CL:0002251;1.32e-14;20!CL:0002076;4.25e-12;42!CL:0002535;1.97e-10;2!CL:0002166;2.25e-07;3!CL:0002623;2.97e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002621,1.14e-24,3;CL:0002251,1.32e-14,20;CL:0002076,8.91e-11,42;CL:0002535,2.27e-10,2;CL:0000223,8.15e-08,58;CL:0002166,2.05e-07,3;CL:0002623,3.16e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1749!7.53e-19!14;DOID:305!1.17e-12!106;DOID:0050687!8.97e-09!143 | |ontology_enrichment_disease=DOID:1749!7.53e-19!14;DOID:305!1.17e-12!106;DOID:0050687!8.97e-09!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.52e-21;14!DOID:4362;1.35e-15;5!DOID:4556;2.25e-07;3 | |ontology_enrichment_disease_v019=DOID:1749;5.52e-21;14!DOID:4362;1.35e-15;5!DOID:4556;2.25e-07;3 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,5.67e-21,14;DOID:4362,1.51e-15,5;DOID:4556,2.32e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0003729!3.06e-12!5;UBERON:0004119!3.02e-11!169;UBERON:0000925!3.02e-11!169;UBERON:0006595!3.02e-11!169;UBERON:0003343!3.82e-10!4;UBERON:0004785!3.82e-10!4;UBERON:0000161!4.29e-10!35;UBERON:0000166!7.43e-10!21;UBERON:0001004!7.02e-09!72;UBERON:0000344!1.26e-08!12;UBERON:0001949!2.23e-08!3;UBERON:0000165!2.50e-08!28;UBERON:0000930!2.50e-08!28;UBERON:0001007!3.49e-08!155;UBERON:0001555!3.49e-08!155;UBERON:0007026!3.49e-08!155;UBERON:0001473!1.58e-07!8;UBERON:0004536!1.58e-07!8;UBERON:0006558!1.58e-07!8 | |ontology_enrichment_uberon=UBERON:0003729!3.06e-12!5;UBERON:0004119!3.02e-11!169;UBERON:0000925!3.02e-11!169;UBERON:0006595!3.02e-11!169;UBERON:0003343!3.82e-10!4;UBERON:0004785!3.82e-10!4;UBERON:0000161!4.29e-10!35;UBERON:0000166!7.43e-10!21;UBERON:0001004!7.02e-09!72;UBERON:0000344!1.26e-08!12;UBERON:0001949!2.23e-08!3;UBERON:0000165!2.50e-08!28;UBERON:0000930!2.50e-08!28;UBERON:0001007!3.49e-08!155;UBERON:0001555!3.49e-08!155;UBERON:0007026!3.49e-08!155;UBERON:0001473!1.58e-07!8;UBERON:0004536!1.58e-07!8;UBERON:0006558!1.58e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.14e-24;3!UBERON:0000161;2.35e-15;19!UBERON:0000166;2.35e-15;19!UBERON:0000002;3.66e-13;6!UBERON:0001560;3.66e-13;6!UBERON:0003729;5.49e-13;13!UBERON:0003929;3.66e-11;7!UBERON:0000165;1.55e-10;28!UBERON:0006955;1.97e-10;2!UBERON:0004801;1.97e-10;2!UBERON:0003350;6.94e-10;8!UBERON:0001828;6.94e-10;8!UBERON:0000344;1.17e-08;20!UBERON:0001004;3.60e-08;65!UBERON:0004807;5.72e-08;22!UBERON:0000486;6.94e-07;12 | |ontology_enrichment_uberon_v019=UBERON:0001949;1.14e-24;3!UBERON:0000161;2.35e-15;19!UBERON:0000166;2.35e-15;19!UBERON:0000002;3.66e-13;6!UBERON:0001560;3.66e-13;6!UBERON:0003729;5.49e-13;13!UBERON:0003929;3.66e-11;7!UBERON:0000165;1.55e-10;28!UBERON:0006955;1.97e-10;2!UBERON:0004801;1.97e-10;2!UBERON:0003350;6.94e-10;8!UBERON:0001828;6.94e-10;8!UBERON:0000344;1.17e-08;20!UBERON:0001004;3.60e-08;65!UBERON:0004807;5.72e-08;22!UBERON:0000486;6.94e-07;12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.14e-24,3;UBERON:0000166,2.58e-13,22;UBERON:0000002,4.01e-13,6;UBERON:0001560,4.01e-13,6;UBERON:0003729,5.27e-13,13;UBERON:0006955,2.27e-10,2;UBERON:0004801,2.27e-10,2;UBERON:0000165,3.48e-10,29;UBERON:0000930,3.48e-10,29;UBERON:0003350,6.94e-10,8;UBERON:0001828,6.94e-10,8;UBERON:0000344,1.14e-08,20;UBERON:0001004,1.31e-08,74;UBERON:0000161,2.91e-08,36;UBERON:0000033,4.43e-08,56;UBERON:0000153,2.67e-07,62;UBERON:0007811,2.67e-07,62 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0.775250277507987,0.71153252537342,1.67360306382335,0,0,0,0,0,0.625098097988558,0,0.112611480483322,0,0,0,0,0,0.436094052142534,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0.57978255948989,1.90922284413584,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0.301586917234893,0.555530670951178,0,0,0,0,0.117408694235822,0.288732895522148,0,0.380508304469197,0,0,0,0,0,0.93733833986777,2.85569617938061,0.708875486211932,0.179117045405697,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0.183138929636687,0,0,0,0,0,0,0,0,0.107420244868274,0,0.0852266274161009,0,0.495854746082934,0.768760269460425,20.6732594241226,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0.445234820091624,0,0,0,0,0,0,0,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,9.62023835522363,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,2.00236175134926,0,0,0.0967563312890851,0,0.164230914106418,0,0,0,0.685209623233754,0,0,0.195551382734803,0.160317640503067,0,0,0,0,0,0,0.124252535565433,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0.179287339332845,2.68681276247223,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.310525913752519,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0.214441591374926,0,0,0.463044948647668,0.244736704506468,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76665893301846,0.235939446695481,0.917142992608395,0.577628330751691,0,0,0,0,0,0,0.261906694481422,0.327543835020193,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0.171488009437418,0,0,0.709163045303809,0,0,0,0,0,0,0,0,0,0,0,0,0.62164849248911,1.3657478167516,0.691259661814092,0,0,0.0852134047591577,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,2.82315897372553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0.244209805832924,0,0,0,0,0,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0.775250277507987,0.71153252537342,1.67360306382335,0,0,0,0,0,0.625098097988558,0,0.112611480483322,0,0,0,0,0,0.436094052142534,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0.57978255948989,1.90922284413584,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0.301586917234893,0.555530670951178,0,0,0,0,0.117408694235822,0.288732895522148,0,0.380508304469197,0,0,0,0,0,0.93733833986777,2.85569617938061,0.708875486211932,0.179117045405697,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0.183138929636687,0,0,0,0,0,0,0,0,0.107420244868274,0,0.0852266274161009,0,0.495854746082934,0.768760269460425,20.6732594241226,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0.445234820091624,0,0,0,0,0,0,0,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,9.62023835522363,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,2.00236175134926,0,0,0.0967563312890851,0,0.164230914106418,0,0,0,0.685209623233754,0,0,0.195551382734803,0.160317640503067,0,0,0,0,0,0,0.124252535565433,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0.179287339332845,2.68681276247223,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.310525913752519,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0.214441591374926,0,0,0.463044948647668,0.244736704506468,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76665893301846,0.235939446695481,0.917142992608395,0.577628330751691,0,0,0,0,0,0,0.261906694481422,0.327543835020193,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0.171488009437418,0,0,0.709163045303809,0,0,0,0,0,0,0,0,0,0,0,0,0.62164849248911,1.3657478167516,0.691259661814092,0,0,0.0852134047591577,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,2.82315897372553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:56007040..56007060,+ | |short_description=p@chr2:56007040..56007060,+ | ||
}} | }} |
Latest revision as of 10:59, 29 July 2015
Short description: | p@chr2:56007040..56007060, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:56007040..56007060, + |
Coexpression cluster: | C195_Small_Gingival_Bronchial_Smooth_mesenchymal_Urothelial_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 1.14e-24 | 3 |
epithelial cell of alimentary canal | 1.32e-14 | 20 |
endo-epithelial cell | 8.91e-11 | 42 |
epithelial cell of cervix | 2.27e-10 | 2 |
endodermal cell | 8.15e-08 | 58 |
epithelial cell of Malassez | 2.05e-07 | 3 |
acinar cell of salivary gland | 3.16e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.14e-24 | 3 |
oral opening | 2.58e-13 | 22 |
uterine cervix | 4.01e-13 | 6 |
neck of organ | 4.01e-13 | 6 |
mouth mucosa | 5.27e-13 | 13 |
uterine epithelium | 2.27e-10 | 2 |
cervix epithelium | 2.27e-10 | 2 |
mouth | 3.48e-10 | 29 |
stomodeum | 3.48e-10 | 29 |
epithelium of mucosa | 6.94e-10 | 8 |
gingiva | 6.94e-10 | 8 |
mucosa | 1.14e-08 | 20 |
respiratory system | 1.31e-08 | 74 |
orifice | 2.91e-08 | 36 |
head | 4.43e-08 | 56 |
anterior region of body | 2.67e-07 | 62 |
craniocervical region | 2.67e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.67e-21 | 14 |
cervical cancer | 1.51e-15 | 5 |
lung large cell carcinoma | 2.32e-07 | 3 |