FFCP PHASE1:Hg19::chr7:27183191..27183214,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3202 | |EntrezGene=3202 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5106 | |HGNC=5106 | ||
|TSSclassifier=strong | |||
|UniProt=P20719,Q6FG31 | |UniProt=P20719,Q6FG31 | ||
|association_with_transcript=11bp_to_AB587591,BT009744,CR542256,CR542277,DQ890593,DQ893761_5end | |association_with_transcript=11bp_to_AB587591,BT009744,CR542256,CR542277,DQ890593,DQ893761_5end | ||
|cluster_id=chr7:27183191..27183214,- | |||
|coexpression_cluster_id=C1992 | |coexpression_cluster_id=C1992 | ||
|description=CAGE_peak_4_at_HOXA5_5end | |description=CAGE_peak_4_at_HOXA5_5end | ||
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|ontology_enrichment_celltype=CL:0002334!4.83e-10!12;CL:0000136!8.00e-07!15 | |ontology_enrichment_celltype=CL:0002334!4.83e-10!12;CL:0000136!8.00e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0002615;3.02e-10;3!CL:0002564;5.12e-10;3!CL:0002582;2.12e-09;3!CL:0002593;6.02e-08;2!CL:0002602;1.27e-07;2!CL:0002600;2.12e-07;2!CL:0002595;8.90e-07;5 | |ontology_enrichment_celltype_v019=CL:0002615;3.02e-10;3!CL:0002564;5.12e-10;3!CL:0002582;2.12e-09;3!CL:0002593;6.02e-08;2!CL:0002602;1.27e-07;2!CL:0002600;2.12e-07;2!CL:0002595;8.90e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002564,3.56e-10,3;CL:0002615,5.49e-10,3;CL:0002582,7.50e-09,3;CL:0002593,6.06e-08,2;CL:0002600,1.28e-07,2;CL:0002602,1.28e-07,2;CL:0002595,8.95e-07,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;1.18e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;1.18e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,1.49e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0009569!4.58e-10!113;UBERON:0000464!1.80e-08!104;UBERON:0003688!3.93e-08!6;UBERON:0002358!3.93e-08!6;UBERON:0003684!3.93e-08!6;UBERON:0001178!3.93e-08!6;UBERON:0000915!4.62e-07!52;UBERON:0002100!7.63e-07!216;UBERON:0003886!9.93e-07!63 | |ontology_enrichment_uberon=UBERON:0009569!4.58e-10!113;UBERON:0000464!1.80e-08!104;UBERON:0003688!3.93e-08!6;UBERON:0002358!3.93e-08!6;UBERON:0003684!3.93e-08!6;UBERON:0001178!3.93e-08!6;UBERON:0000915!4.62e-07!52;UBERON:0002100!7.63e-07!216;UBERON:0003886!9.93e-07!63 | ||
|ontology_enrichment_uberon_v019=UBERON:0011135;6.11e-16;5!UBERON:0002216;6.11e-16;5!UBERON:0011134;6.11e-16;5!UBERON:0002209;6.11e-16;5!UBERON:0002213;6.11e-16;5!UBERON:0007844;6.11e-16;5!UBERON:0011138;6.11e-16;5!UBERON:0001130;6.11e-16;5!UBERON:0001066;6.11e-16;5!UBERON:0001468;6.11e-16;5!UBERON:0003688;5.23e-13;6!UBERON:0002358;5.23e-13;6!UBERON:0003684;5.23e-13;6!UBERON:0001178;5.23e-13;6!UBERON:0002242;5.12e-10;3!UBERON:0004905;8.04e-10;8!UBERON:0000982;8.04e-10;8!UBERON:0004770;8.04e-10;8!UBERON:0004457;1.51e-08;9!UBERON:0000042;1.51e-08;9!UBERON:0002456;6.02e-08;2!UBERON:0006444;1.27e-07;2!UBERON:0001995;1.27e-07;2!UBERON:0004715;1.27e-07;2!UBERON:0003834;8.90e-07;5!UBERON:0001533;8.90e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0011135;6.11e-16;5!UBERON:0002216;6.11e-16;5!UBERON:0011134;6.11e-16;5!UBERON:0002209;6.11e-16;5!UBERON:0002213;6.11e-16;5!UBERON:0007844;6.11e-16;5!UBERON:0011138;6.11e-16;5!UBERON:0001130;6.11e-16;5!UBERON:0001066;6.11e-16;5!UBERON:0001468;6.11e-16;5!UBERON:0003688;5.23e-13;6!UBERON:0002358;5.23e-13;6!UBERON:0003684;5.23e-13;6!UBERON:0001178;5.23e-13;6!UBERON:0002242;5.12e-10;3!UBERON:0004905;8.04e-10;8!UBERON:0000982;8.04e-10;8!UBERON:0004770;8.04e-10;8!UBERON:0004457;1.51e-08;9!UBERON:0000042;1.51e-08;9!UBERON:0002456;6.02e-08;2!UBERON:0006444;1.27e-07;2!UBERON:0001995;1.27e-07;2!UBERON:0004715;1.27e-07;2!UBERON:0003834;8.90e-07;5!UBERON:0001533;8.90e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,4.28e-16,5;UBERON:0002216,4.28e-16,5;UBERON:0011134,4.28e-16,5;UBERON:0002209,4.28e-16,5;UBERON:0002213,4.28e-16,5;UBERON:0005856,4.28e-16,5;UBERON:0005866,4.28e-16,5;UBERON:0005863,4.28e-16,5;UBERON:0007844,4.28e-16,5;UBERON:0011138,4.28e-16,5;UBERON:0001130,4.28e-16,5;UBERON:0001066,4.28e-16,5;UBERON:0001468,4.28e-16,5;UBERON:0003688,1.01e-12,6;UBERON:0002358,1.01e-12,6;UBERON:0003684,1.01e-12,6;UBERON:0001178,1.01e-12,6;UBERON:0002242,3.56e-10,3;UBERON:0003068,3.56e-10,3;UBERON:0002328,3.56e-10,3;UBERON:0004880,3.56e-10,3;UBERON:0004905,6.47e-10,8;UBERON:0000982,6.47e-10,8;UBERON:0004770,6.47e-10,8;UBERON:0002456,6.06e-08,2;UBERON:0006444,1.28e-07,2;UBERON:0001995,1.28e-07,2;UBERON:0004715,1.28e-07,2;UBERON:0009569,5.67e-07,112;UBERON:0003834,8.95e-07,5;UBERON:0001533,8.95e-07,5 | |||
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| ||
|short_description=p4@HOXA5 | |short_description=p4@HOXA5 | ||
}} | }} |
Latest revision as of 01:29, 18 September 2015
Short description: | p4@HOXA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HOXA5_5end |
Coexpression cluster: | C1992_Mesothelial_glioma_Smooth_Basophils_mesenchymal_Neutrophils_gastric |
Association with transcript: | 11bp_to_AB587591, BT009744, CR542256, CR542277, DQ890593, DQ893761_5end |
EntrezGene: | HOXA5 |
HGNC: | 5106 |
UniProt: | P20719Q6FG31 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 3.56e-10 | 3 |
adipocyte of omentum tissue | 5.49e-10 | 3 |
visceral preadipocyte | 7.50e-09 | 3 |
smooth muscle cell of the internal thoracic artery | 6.06e-08 | 2 |
smooth muscle cell of trachea | 1.28e-07 | 2 |
annulus pulposus cell | 1.28e-07 | 2 |
smooth muscle cell of the subclavian artery | 8.95e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 4.28e-16 | 5 |
symphysis | 4.28e-16 | 5 |
nonsynovial joint | 4.28e-16 | 5 |
fibrous joint | 4.28e-16 | 5 |
cartilaginous joint | 4.28e-16 | 5 |
developing mesenchymal condensation | 4.28e-16 | 5 |
pre-cartilage condensation | 4.28e-16 | 5 |
cartilaginous condensation | 4.28e-16 | 5 |
cartilage element | 4.28e-16 | 5 |
post-cranial axial skeletal system | 4.28e-16 | 5 |
vertebral column | 4.28e-16 | 5 |
intervertebral disk | 4.28e-16 | 5 |
intervertebral joint | 4.28e-16 | 5 |
omentum | 1.01e-12 | 6 |
peritoneum | 1.01e-12 | 6 |
abdominal cavity | 1.01e-12 | 6 |
visceral peritoneum | 1.01e-12 | 6 |
nucleus pulposus | 3.56e-10 | 3 |
axial mesoderm | 3.56e-10 | 3 |
notochord | 3.56e-10 | 3 |
chordamesoderm | 3.56e-10 | 3 |
articulation | 6.47e-10 | 8 |
skeletal joint | 6.47e-10 | 8 |
articular system | 6.47e-10 | 8 |
internal thoracic artery | 6.06e-08 | 2 |
annulus fibrosus | 1.28e-07 | 2 |
fibrocartilage | 1.28e-07 | 2 |
annulus fibrosus disci intervertebralis | 1.28e-07 | 2 |
subdivision of trunk | 5.67e-07 | 112 |
thoracic segment blood vessel | 8.95e-07 | 5 |
subclavian artery | 8.95e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.49e-07 | 14 |