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MCL coexpression mm9:115: Difference between revisions

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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=}}
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.00884965034136104,-0.011160156241015,-0.00358160189837166,-0.0250837255392426,-0.031131290784851,0.00448126877022717,0.00623967438996733,0.0529644630114537,0.0487070267429827,0.0485893456208747,0.017278047805524,0.0142576986844298,0.0231612984827722,0.0172557302850892,0.0429259126566243,0.0567425211416535,0.0564505389005633,0.0950705215755267,0.0924668603182745,0.0925188359999709,0.00795569619480216,0.432887434872982,0.405134281226244,0.0335863424381326,0.0361746977704102,-0.00963303834878303,0.00203821852950643,0.00904042085949919,-0.00846826526826375,0.000137390650812621,0.0224944211007072,-0.0106674339135374,-0.0219480680301339,-0.0492806572099122,0.025858299465059,0.0276198897596192,0.0293303932273775,0.122467698500444,0.135145959872519,0.103006444646375,0.119989831621896,0.101454778112515,0.0821823659978411,0.015009282630157,0.0071332190394142,0.0153620774913233,0.0134852656275912,0.0120881547023082,-0.00794215773136402,-0.00143136521152149,0.0198748245798175,0.00403561551455867,0.0895798509192401,0.0334350519764486,0.0386021638983002,0.0145678736435902,0.0130915885672842,0.00111201087871793,-0.0038610691310479,-0.00622804228372024,-0.00440078412377105,0.0152150079600031,0.00887321734569415,0.0818215520248152,0.0876378103608724,0.062000662404527,0.0429700233619769,0.0585543516300965,0.00938950385740463,0.0209809046725645,0.0128666409690942,-0.01402031105816,-0.0015597542233557,0.00133897795160134,0.00232923735689983,-0.00537062066087423,-0.0182841789181522,-0.0162706742856774,-0.0241696317700658,-0.0117788644687181,-0.0031634299075711,-0.0195479236815162,-0.0169015605090849,-0.0185307737398184,-0.0105813591251199,-0.00233798396047892,0.000998381455657687,-0.00616907932528637,0.00636144382644293,0.0101052673997802,0.071047132276044,0.0284618977509574,0.00599183431463597,-0.00821133307564593,-0.0122202439851918,-0.0187873495849041,0.018844899835387,0.00198400883307773,0.0193210296945209,0.0043226454864797,-0.00174713017118396,-0.0074110432395341,-0.028119853046725,-0.0363143035609355,0.0483303060625404,0.0318860575396782,0.0359164281690815,0.0161450567591879,0.0968281558589561,0.00116574947789936,0.0285542853092068,0.015740740431677,0.0111836309242626,0.0114186284621538,0.0152157605245996,-0.0137610867607891,0.0251738728995296,0.00355447147503586,0.1338170601153,0.0381870605052484,0.111143637338269,0.125040307154586,-0.024906204507584,-0.0167364480949344,-0.018201665744469,0.00253268330266883,0.842350713367828,0.80828253142331,0.828623139842809,-0.0232782873993758,-0.020612715672562,-0.0122651737158602,-0.0216930597804464,-0.0150536847912756,-0.0224752309018609,-0.017531180293484,0.0272052181193314,0.131844110085728,0.0248984036178048,-0.0156010738031586,0.0320933852028719,0.00946341712760811,0.0108861296270916,0.0212401731573066,0.0194620545150455,0.0264550592905011,0.0196011446116744,-0.00246771230428508,0.0337602802409748,0.0189043064206104,0.017434259253959,0.021843427941168,0.0217427028916331,0.0260621957709428,0.0298265193668792,0.0259662184356244,0.68632346915422,0.685863226065967,0.66397177060932,0.000480066869905074,0.0272833760433458,0.00582638646381263,0.0111781992087756,0.00808093504350337,0.000834347594820621,-0.000513181342983457,0.000167731017970926,0.00487415441723614,0.000753568647972856,0.00623171055304641,-0.00281550904514354,0.00313498928093651,0.00373227047599336,0.00244706854479034,-0.0142262739229575,0.00179403548581032,-0.00922234665314959,-0.00582006712598836,0.0221887218948278,0.0188652015953978,0.0188464246374915,0.0229735665632473,0.0141877560406184,0.0111215746771637,0.017580835818885,0.0100996808429274,0.0213525584401689,0.0209125942864717,0.0203740851766421,0.0146138364657526,0.0127075658190546,0.00800524143802221,0.013608033259392,0.0220139438544526,0.0147984589128595,0.0183087250713231,0.0179819518499153,0.0172207996895628,0.0109045146372164,-0.00199328809286688,-0.00153949415221459,0.00420506309102278,-0.00512578208217182,0.0519753391272881,0.0463866246943642,0.0539833772727121,0.0520293484421918,0.0574186004196227,0.0556804801066103,0.0648072951117111,0.0799964657390706,0.0597940980024389,0.0463860315181159,0.0576702444959121,0.0413383309951736,0.0122045123127235,-0.00366533726764331,-0.00019409215360465,0.0377924671261276,0.0203232222718407,0.0118368405663731,0.028125074319609,0.0274182840074539,0.0181998889229322,0.0240677134288466,0.0147814707231979,0.0326797048762862,0.037760479383836,0.0327341571681012,0.0451039572646719,0.0518367815886189,0.0521861581959511,0.0894714038497751,0.093436789613811,0.0109611960726662,0.0184937215299355,-0.0184938554969535,-0.017681586048862,-0.00411589451277233,0.00159135343140912,0.014318251047322,0.015731061868088,0.0103133350682395,-0.00467023630524677,0.00934544495246921,-0.00687486192746433,0.0348002379389692,0.0330446986761264,0.00217083700937251,-0.0118060551121258,0.0106017438551565,0.0220366472660821,0.0240037824975361,0.0280794936180471,-0.0125714629401511,0.031768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Latest revision as of 14:43, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:110597526..110597550,+p@chr10:110597526..110597550
+
Mm9::chr10:120073158..120073163,-p@chr10:120073158..120073163
-
Mm9::chr10:17492540..17492547,+p@chr10:17492540..17492547
+
Mm9::chr10:25015263..25015268,+p@chr10:25015263..25015268
+
Mm9::chr10:57910125..57910179,-p@chr10:57910125..57910179
-
Mm9::chr10:79487040..79487063,-p@chr10:79487040..79487063
-
Mm9::chr11:101488255..101488257,-p@chr11:101488255..101488257
-
Mm9::chr11:114821805..114821823,-p1@Cd300c
Mm9::chr11:59355156..59355168,+p@chr11:59355156..59355168
+
Mm9::chr11:62416683..62416694,+p@chr11:62416683..62416694
+
Mm9::chr11:72363697..72363708,-p@chr11:72363697..72363708
-
Mm9::chr11:72363732..72363746,-p1@Spns3
Mm9::chr11:75228608..75228620,-p6@Serpinf1
Mm9::chr11:97003596..97003600,-p@chr11:97003596..97003600
-
Mm9::chr12:106230793..106230804,+p@chr12:106230793..106230804
+
Mm9::chr12:70638828..70638838,-p@chr12:70638828..70638838
-
Mm9::chr13:37672927..37672979,+p@chr13:37672927..37672979
+
Mm9::chr13:37672985..37673013,+p@chr13:37672985..37673013
+
Mm9::chr13:55533619..55533626,-p@chr13:55533619..55533626
-
Mm9::chr13:56175406..56175420,-p@chr13:56175406..56175420
-
Mm9::chr13:56197535..56197550,-p@chr13:56197535..56197550
-
Mm9::chr13:56236833..56236869,-p1@H2afy
Mm9::chr13:56236990..56237016,-p5@H2afy
Mm9::chr13:56237017..56237029,-p10@H2afy
Mm9::chr13:56237037..56237049,-p8@H2afy
Mm9::chr13:56237145..56237171,-p6@H2afy
Mm9::chr13:56237198..56237209,-p16@H2afy
Mm9::chr13:56237261..56237276,-p7@H2afy
Mm9::chr13:64254437..64254453,-p4@Zfp367
Mm9::chr14:45660873..45660897,-p@chr14:45660873..45660897
-
Mm9::chr14:60888230..60888243,+p@chr14:60888230..60888243
+
Mm9::chr15:33980174..33980198,+p@chr15:33980174..33980198
+
Mm9::chr15:76029980..76029992,+p@chr15:76029980..76029992
+
Mm9::chr15:76030009..76030020,+p@chr15:76030009..76030020
+
Mm9::chr16:19760888..19760891,+p12@B3gnt5
Mm9::chr16:33787190..33787218,-p2@ENSMUST00000148293
p2@uc007zak.1
Mm9::chr16:92826080..92826091,-p@chr16:92826080..92826091
-
Mm9::chr16:94444596..94444600,-p@chr16:94444596..94444600
-
Mm9::chr17:24867833..24867848,+p@chr17:24867833..24867848
+
Mm9::chr17:45893571..45893577,-p@chr17:45893571..45893577
-
Mm9::chr17:45894898..45894908,-p@chr17:45894898..45894908
-
Mm9::chr17:88197369..88197389,-p2@Kcnk12
Mm9::chr18:15309185..15309190,+p@chr18:15309185..15309190
+
Mm9::chr18:15353713..15353758,+p@chr18:15353713..15353758
+
Mm9::chr19:35932869..35932871,-p@chr19:35932869..35932871
-
Mm9::chr19:47653901..47653915,+p7@Slk
Mm9::chr19:8797434..8797452,+p@chr19:8797434..8797452
+
Mm9::chr1:133656896..133656904,+p@chr1:133656896..133656904
+
Mm9::chr1:156907074..156907076,+p@chr1:156907074..156907076
+
Mm9::chr1:175357740..175357744,+p@chr1:175357740..175357744
+
Mm9::chr1:184452543..184452546,+p@chr1:184452543..184452546
+
Mm9::chr2:148265887..148265889,+p@chr2:148265887..148265889
+
Mm9::chr2:30775800..30775825,-p@chr2:30775800..30775825
-
Mm9::chr2:90926564..90926594,-p@chr2:90926564..90926594
-
Mm9::chr3:135271185..135271254,-p4@Nfkb1
Mm9::chr3:137644447..137644458,-p4@Dapp1
Mm9::chr3:142680086..142680112,+p@chr3:142680086..142680112
+
Mm9::chr3:20142057..20142066,-p@chr3:20142057..20142066
-
Mm9::chr3:78965567..78965595,+p@chr3:78965567..78965595
+
Mm9::chr4:114735446..114735466,+p@chr4:114735446..114735466
+
Mm9::chr4:140255558..140255565,-p@chr4:140255558..140255565
-
Mm9::chr5:105418368..105418390,-p1@ENSMUST00000062467
Mm9::chr5:109976346..109976355,+p@chr5:109976346..109976355
+
Mm9::chr5:121010361..121010381,-p4@Tpcn1
Mm9::chr5:121010382..121010411,-p3@Tpcn1
Mm9::chr5:132734904..132734922,-p@chr5:132734904..132734922
-
Mm9::chr5:134704120..134704134,-p2@Ncf1
Mm9::chr5:138668608..138668646,-p@chr5:138668608..138668646
-
Mm9::chr5:22056068..22056079,-p2@Orc5
Mm9::chr5:3342403..3342410,-p@chr5:3342403..3342410
-
Mm9::chr5:3343907..3343945,+p1@Cdk6
Mm9::chr5:3522260..3522265,+p1@uc008wgw.1
Mm9::chr6:128840977..128840980,-p1@uc009eet.1
Mm9::chr6:128841123..128841196,-p1@BC035044
Mm9::chr6:128964124..128964132,+p@chr6:128964124..128964132
+
Mm9::chr6:28347999..28348023,-p3@Zfp800
Mm9::chr6:88116155..88116166,-p@chr6:88116155..88116166
-
Mm9::chr7:152296622..152296624,-p@chr7:152296622..152296624
-
Mm9::chr7:20462508..20462510,+p@chr7:20462508..20462510
+
Mm9::chr7:31822900..31822909,-p@chr7:31822900..31822909
-
Mm9::chr7:53176481..53176497,-p7@Emp3
Mm9::chr8:108530998..108531010,-p@chr8:108530998..108531010
-
Mm9::chr8:124880136..124880145,+p@chr8:124880136..124880145
+
Mm9::chr8:87509236..87509243,-p@chr8:87509236..87509243
-
Mm9::chr8:97544125..97544128,-p@chr8:97544125..97544128
-
Mm9::chr8:97544689..97544719,+p@chr8:97544689..97544719
+
Mm9::chr8:97544724..97544745,+p@chr8:97544724..97544745
+
Mm9::chr8:97573897..97573901,+p@chr8:97573897..97573901
+
Mm9::chr9:114684499..114684510,-p@chr9:114684499..114684510
-
Mm9::chr9:114684532..114684543,-p@chr9:114684532..114684543
-
Mm9::chr9:114684544..114684555,-p@chr9:114684544..114684555
-
Mm9::chr9:114684561..114684576,-p@chr9:114684561..114684576
-
Mm9::chr9:114684581..114684601,-p@chr9:114684581..114684601
-
Mm9::chr9:114684606..114684620,-p@chr9:114684606..114684620
-
Mm9::chr9:114691063..114691074,-p3@Cmtm7
Mm9::chr9:114691104..114691116,-p2@Cmtm7
Mm9::chr9:20935605..20935612,-p@chr9:20935605..20935612
-
Mm9::chr9:88275022..88275026,-p@chr9:88275022..88275026
-
Mm9::chr9:88275046..88275071,-p@chr9:88275046..88275071
-
Mm9::chr9:88275082..88275100,-p@chr9:88275082..88275100
-
Mm9::chrX:131076386..131076439,-p1@Timm8a1
Mm9::chrX:166434996..166435008,+p@chrX:166434996..166435008
+
Mm9::chrX:18744363..18744370,-p1@ENSMUST00000150801
p1@uc009ssq.1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hematopoietic system9.10e-0945
blood island9.10e-0945
hemolymphoid system3.96e-0848
immune system3.96e-0848
hemopoietic organ7.89e-0729
immune organ7.89e-0729


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00141057
MA0004.10.269257
MA0006.10.000247203
MA0007.10.236967
MA0009.10.254707
MA0014.10.0515735
MA0017.10.694839
MA0019.11.50446
MA0024.10.462307
MA0025.10.185438
MA0027.11.41561
MA0028.10.0175104
MA0029.10.424555
MA0030.10.435819
MA0031.10.376296
MA0038.10.121856
MA0040.10.566062
MA0041.10.219555
MA0042.10.0558029
MA0043.10.364245
MA0046.10.293395
MA0048.10.544169
MA0050.11.05407
MA0051.10.268268
MA0052.10.581584
MA0055.10.0534394
MA0056.10
MA0057.10.0486068
MA0058.10.28219
MA0059.10.318063
MA0060.10.0247372
MA0061.11.07574
MA0063.10
MA0066.12.97166
MA0067.10.255348
MA0068.10.00311229
MA0069.10.276929
MA0070.10.954725
MA0071.10.111108
MA0072.10.0740861
MA0073.10.149658
MA0074.10.331651
MA0076.10.209482
MA0077.11.31268
MA0078.10.326413
MA0081.10.560376
MA0083.10.36328
MA0084.10.505042
MA0087.10.312428
MA0088.10.142954
MA0089.10
MA0090.10.907537
MA0091.10.0351558
MA0092.10.483788
MA0093.10.236127
MA0095.10
MA0098.10
MA0100.10.729311
MA0101.12.06847
MA0103.10.0614353
MA0105.10.347498
MA0106.10.571432
MA0107.11.68833
MA0108.20.823279
MA0109.10
MA0111.10.362693
MA0113.10.0520977
MA0114.10.133297
MA0115.10.114701
MA0116.12.20299
MA0117.10.329093
MA0119.10.347349
MA0122.11.17826
MA0124.10.220707
MA0125.10.176036
MA0130.10
MA0131.10.455261
MA0132.10
MA0133.10
MA0135.10.130955
MA0136.10.857809
MA0139.10.00449742
MA0140.10.024416
MA0141.10.146568
MA0142.10.0391649
MA0143.10.318937
MA0144.10.0112426
MA0145.10.576808
MA0146.10.335584
MA0147.10.169933
MA0148.10.683729
MA0149.10.011064
MA0062.20.105545
MA0035.20.316679
MA0039.20.00137864
MA0138.20.0210239
MA0002.23.3498
MA0137.20.00474315
MA0104.20.0335065
MA0047.20.43877
MA0112.20.246387
MA0065.20.581799
MA0150.11.96701
MA0151.10
MA0152.10.0430376
MA0153.11.37298
MA0154.10.0989272
MA0155.10.059249
MA0156.10.808924
MA0157.10.128551
MA0158.10
MA0159.10.403575
MA0160.10.485053
MA0161.10
MA0162.10.00155538
MA0163.10.00627741
MA0164.10.376981
MA0080.22.67066
MA0018.20.0370934
MA0099.22.85104
MA0079.25.2401e-08
MA0102.21.35437
MA0258.12.09287
MA0259.10.0259628
MA0442.10
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