FFCP PHASE1:Mm9::chr3:128918394..128918413,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18741 | |EntrezGene=18741 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=395 | |MCL_coexpression_id=395 | ||
|TSSclassifier=NA | |||
|UniProt=G3UZS8 | |UniProt=G3UZS8 | ||
|association_with_transcript=-24bp_to_ENSMUST00000172751_5end | |association_with_transcript=-24bp_to_ENSMUST00000172751_5end | ||
|cluster_id=chr3:128918394..128918413,+ | |||
|description=CAGE_peak_5_at_Pitx2_5end | |description=CAGE_peak_5_at_Pitx2_5end | ||
|id=chr3:128918394..128918413,+ | |id=chr3:128918394..128918413,+ | ||
|ontology_enrichment_celltype=CL:0002563!1.77e-09!9;CL:0002251!1.77e-09!9 | |ontology_enrichment_celltype=CL:0002563!1.77e-09!9;CL:0002251!1.77e-09!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.71e-21,9;CL:0002251,1.71e-21,9;CL:0000239,2.19e-14,6;CL:0000677,2.19e-14,6;CL:0000584,2.19e-14,6;CL:0000075,3.22e-12,7;CL:0002076,3.84e-12,15;CL:0000066,6.79e-12,25;CL:0002250,1.08e-08,3;CL:0000223,1.20e-08,20;CL:0000682,7.35e-08,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.30e-14!15;UBERON:0005409!8.54e-14!59;UBERON:0000160!9.91e-14!43;UBERON:0001242!4.49e-13!13;UBERON:0000060!4.49e-13!13;UBERON:0001262!4.49e-13!13;UBERON:0004786!4.49e-13!13;UBERON:0004923!9.76e-10!24;UBERON:0003350!1.77e-09!9;UBERON:0004808!1.77e-09!9;UBERON:0001277!1.77e-09!9;UBERON:0000485!4.13e-07!11 | |ontology_enrichment_uberon=UBERON:0000344!1.30e-14!15;UBERON:0005409!8.54e-14!59;UBERON:0000160!9.91e-14!43;UBERON:0001242!4.49e-13!13;UBERON:0000060!4.49e-13!13;UBERON:0001262!4.49e-13!13;UBERON:0004786!4.49e-13!13;UBERON:0004923!9.76e-10!24;UBERON:0003350!1.77e-09!9;UBERON:0004808!1.77e-09!9;UBERON:0001277!1.77e-09!9;UBERON:0000485!4.13e-07!11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.50e-47,31;UBERON:0000344,1.77e-34,15;UBERON:0005409,2.97e-31,47;UBERON:0001242,1.39e-30,13;UBERON:0001262,1.39e-30,13;UBERON:0004786,1.39e-30,13;UBERON:0003350,1.71e-21,9;UBERON:0004808,1.71e-21,9;UBERON:0001277,1.71e-21,9;UBERON:0004923,3.95e-20,24;UBERON:0000485,3.06e-17,11;UBERON:0001007,7.27e-13,116;UBERON:0001555,7.27e-13,116;UBERON:0007026,7.27e-13,116;UBERON:0004119,1.58e-12,118;UBERON:0000925,1.58e-12,118;UBERON:0006595,1.58e-12,118;UBERON:0004921,4.78e-11,114;UBERON:0002108,2.23e-10,4;UBERON:0000331,1.02e-08,3;UBERON:0002116,1.02e-08,3;UBERON:0001204,1.02e-08,3;UBERON:0001168,1.02e-08,3 | |||
|phase1_expression=0,4.53668029931169,4.09499315450582,5.74682001482977,6.01074875935617,5.37213670118047,6.77476657727024,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,2.55987876469451,2.98232065387321,2.29692785646008,5.59990595006797,7.54149314400612,10.0712412311878,8.06496415231778,8.64748991555688,0,0,0,9.53210345179206,6.81562045969819,11.637653306955,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,1.05798195854407,0.633831403506179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383062014255563,0.307213066512487,0.263772575460388,0.274462930807229,1.04182674111352,0,1.12552522006336,0.61119299110724,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,1.1418387971906,0,0,0.173485326766136,0,0,0,0,0,0.494389935468748,0.144599356919912,0,0,0.220841518460394,0,7.45567044872489,0,0,4.85368404896324,0,0,0,0.299581278809645,0,0,0,0,0,0.162241263067758,0,0,0,0,0.520481771850815,0.689706313300419,0,0.60281927134286,0.0680364991513279,0,0,0,0.646703978798527,0,0,0.219195732427575,0,0,0,0,0,0,0,1.03562886267751,0.938104239924385,0.36012412292203,0.473489471170421,0.393528463494808,0.154267112887378,0.465067889500816,0,0.817357396570186,0.658239399653922,0.32833492815819,0,0.146199987425332,0,0,0,0,2.31293148088659,5.55346189993443,0,0,0.515469845288373,1.61346819698674,0.667134131534611,1.33157938278791,3.32170343081158,1.64698954724011,1.00534083520108,2.38747766449381,0.974820435595601,6.29173586057955,3.6743468478698,3.18626037206988,0,0,0,0,0,0.0701358198903186,0.252946148497029,0.295220295959204,0.31399745568275,0.123397163921801,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,1.70219802876894,0.720244376125241,0.517434735131018,0.857348140126369,0,0.535106452806212,0.329098041204242,0.304464949114599,0,0.21183207086382,0,0.16488625294148,0.161464426695906,0.0603129249281559,0,0,1.1659233465194,0,0,0.412773735926445,0,0,0,0,0.169978429993855,0.559805809294632,0.276399947608848,0,0.158167996790568,0.609958401380546,0.324016022465404,0.418176592028937,0.218362563746178,0.404593039154462,0.247960367176008,0,3.75883422546199,0,0,0.299033092087958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0811469050738,0,0,0,1.15913756419314,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0.209613162627982,0,0.44449345560323,0.206035057238894,0,0.252697211763798,0.25347929989024,0.188626341386076,0,0.192075457214608,0.0574354689556133,0,0.231768651889711,0,0.824171801606613,0,0.342869252385415,0,0.238436189947321,0,0.0941093804153306,0.25384382367503,0,0,0.271608227691724,0,0.237270036248348,0.0985044823755635,0,0,0.192906610981141,0,0.233931608445408,0.859484216193193,0.191288332068843,0.220591419119515,0.231867835620421 | |phase1_expression=0,4.53668029931169,4.09499315450582,5.74682001482977,6.01074875935617,5.37213670118047,6.77476657727024,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,2.55987876469451,2.98232065387321,2.29692785646008,5.59990595006797,7.54149314400612,10.0712412311878,8.06496415231778,8.64748991555688,0,0,0,9.53210345179206,6.81562045969819,11.637653306955,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,1.05798195854407,0.633831403506179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383062014255563,0.307213066512487,0.263772575460388,0.274462930807229,1.04182674111352,0,1.12552522006336,0.61119299110724,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,1.1418387971906,0,0,0.173485326766136,0,0,0,0,0,0.494389935468748,0.144599356919912,0,0,0.220841518460394,0,7.45567044872489,0,0,4.85368404896324,0,0,0,0.299581278809645,0,0,0,0,0,0.162241263067758,0,0,0,0,0.520481771850815,0.689706313300419,0,0.60281927134286,0.0680364991513279,0,0,0,0.646703978798527,0,0,0.219195732427575,0,0,0,0,0,0,0,1.03562886267751,0.938104239924385,0.36012412292203,0.473489471170421,0.393528463494808,0.154267112887378,0.465067889500816,0,0.817357396570186,0.658239399653922,0.32833492815819,0,0.146199987425332,0,0,0,0,2.31293148088659,5.55346189993443,0,0,0.515469845288373,1.61346819698674,0.667134131534611,1.33157938278791,3.32170343081158,1.64698954724011,1.00534083520108,2.38747766449381,0.974820435595601,6.29173586057955,3.6743468478698,3.18626037206988,0,0,0,0,0,0.0701358198903186,0.252946148497029,0.295220295959204,0.31399745568275,0.123397163921801,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,1.70219802876894,0.720244376125241,0.517434735131018,0.857348140126369,0,0.535106452806212,0.329098041204242,0.304464949114599,0,0.21183207086382,0,0.16488625294148,0.161464426695906,0.0603129249281559,0,0,1.1659233465194,0,0,0.412773735926445,0,0,0,0,0.169978429993855,0.559805809294632,0.276399947608848,0,0.158167996790568,0.609958401380546,0.324016022465404,0.418176592028937,0.218362563746178,0.404593039154462,0.247960367176008,0,3.75883422546199,0,0,0.299033092087958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0811469050738,0,0,0,1.15913756419314,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0.209613162627982,0,0.44449345560323,0.206035057238894,0,0.252697211763798,0.25347929989024,0.188626341386076,0,0.192075457214608,0.0574354689556133,0,0.231768651889711,0,0.824171801606613,0,0.342869252385415,0,0.238436189947321,0,0.0941093804153306,0.25384382367503,0,0,0.271608227691724,0,0.237270036248348,0.0985044823755635,0,0,0.192906610981141,0,0.233931608445408,0.859484216193193,0.191288332068843,0.220591419119515,0.231867835620421 | ||
|short_description=p5@Pitx2 | |short_description=p5@Pitx2 | ||
}} | }} |
Latest revision as of 14:23, 1 October 2015
Short description: | p5@Pitx2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Pitx2_5end |
Coexpression cluster: | MCL_coexpression_mm9:395 |
Association with transcript: | -24bp_to_ENSMUST00000172751_5end |
EntrezGene: | Pitx2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.71e-21 | 9 |
epithelial cell of alimentary canal | 1.71e-21 | 9 |
brush border epithelial cell | 2.19e-14 | 6 |
gut absorptive cell | 2.19e-14 | 6 |
enterocyte | 2.19e-14 | 6 |
columnar/cuboidal epithelial cell | 3.22e-12 | 7 |
endo-epithelial cell | 3.84e-12 | 15 |
epithelial cell | 6.79e-12 | 25 |
intestinal crypt stem cell | 1.08e-08 | 3 |
endodermal cell | 1.20e-08 | 20 |
M cell of gut | 7.35e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 8.50e-47 | 31 |
mucosa | 1.77e-34 | 15 |
gastrointestinal system | 2.97e-31 | 47 |
intestinal mucosa | 1.39e-30 | 13 |
wall of intestine | 1.39e-30 | 13 |
gastrointestinal system mucosa | 1.39e-30 | 13 |
epithelium of mucosa | 1.71e-21 | 9 |
gastrointestinal system epithelium | 1.71e-21 | 9 |
intestinal epithelium | 1.71e-21 | 9 |
organ component layer | 3.95e-20 | 24 |
simple columnar epithelium | 3.06e-17 | 11 |
digestive system | 7.27e-13 | 116 |
digestive tract | 7.27e-13 | 116 |
primitive gut | 7.27e-13 | 116 |
endoderm-derived structure | 1.58e-12 | 118 |
endoderm | 1.58e-12 | 118 |
presumptive endoderm | 1.58e-12 | 118 |
subdivision of digestive tract | 4.78e-11 | 114 |
small intestine | 2.23e-10 | 4 |
ileal mucosa | 1.02e-08 | 3 |
ileum | 1.02e-08 | 3 |
mucosa of small intestine | 1.02e-08 | 3 |
wall of small intestine | 1.02e-08 | 3 |