FFCP PHASE1:Hg19::chr2:200322723..200322739,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:200322723..200322739,-
|short_description=p6@SATB2
|description=CAGE_peak_6_at_SATB2_5end
|association_with_transcript=79bp_to_ENST00000417098,NM_001172509...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23314 | |EntrezGene=23314 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21637 | |HGNC=21637 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UPW6,B3KPQ9 | |UniProt=Q9UPW6,B3KPQ9 | ||
|association_with_transcript=79bp_to_ENST00000417098,NM_001172509,uc002uuy.1_5end | |||
|cluster_id=chr2:200322723..200322739,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_6_at_SATB2_5end | |||
|id=chr2:200322723..200322739,- | |||
|ontology_enrichment_celltype=CL:0002319!5.38e-09!25;CL:0002556!3.02e-07!6;CL:0000095!3.46e-07!17;CL:0000123!3.46e-07!17 | |||
|ontology_enrichment_celltype_v019=CL:0000540;4.71e-12;6!CL:0000404;4.71e-12;6!CL:0000062;4.67e-08;9!CL:0002319;7.56e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.53e-15,8;CL:0000540,4.71e-12,6;CL:0000031,4.71e-12,6;CL:0000404,4.71e-12,6;CL:0002319,7.86e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000031;4.71e-12;6 | |||
|ontology_enrichment_disease=DOID:8692!1.20e-07!31;DOID:14566!4.56e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:8692;9.72e-13;31!DOID:1240;3.82e-10;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,6.08e-14,31;DOID:1240,7.27e-11,39;DOID:2531,4.66e-08,51;DOID:0060083,4.66e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0001017!5.01e-15!82;UBERON:0005743!9.23e-14!86;UBERON:0000073!1.68e-13!94;UBERON:0001016!1.68e-13!94;UBERON:0002619!1.58e-12!22;UBERON:0001950!2.11e-12!20;UBERON:0001869!6.08e-12!32;UBERON:0000955!6.52e-12!69;UBERON:0006238!6.52e-12!69;UBERON:0000956!7.00e-12!25;UBERON:0000203!7.00e-12!25;UBERON:0001893!6.81e-11!34;UBERON:0002020!1.31e-10!34;UBERON:0003528!1.31e-10!34;UBERON:0002791!4.93e-10!33;UBERON:0000033!8.69e-10!123;UBERON:0000153!2.43e-09!129;UBERON:0007811!2.43e-09!129;UBERON:0000200!1.35e-08!6;UBERON:0004121!1.50e-08!169;UBERON:0000924!1.68e-08!173;UBERON:0006601!1.68e-08!173;UBERON:0002616!2.05e-08!59;UBERON:0001049!2.64e-08!57;UBERON:0005068!2.64e-08!57;UBERON:0006241!2.64e-08!57;UBERON:0007135!2.64e-08!57;UBERON:0002780!4.60e-08!41;UBERON:0001890!4.60e-08!41;UBERON:0006240!4.60e-08!41;UBERON:0003129!6.56e-08!11;UBERON:0003080!9.66e-08!42;UBERON:0001758!3.02e-07!6;UBERON:0003672!3.02e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;6.71e-09;20!UBERON:0002022;1.91e-08;1!UBERON:0003112;1.91e-08;1!UBERON:0011158;1.91e-08;1!UBERON:0003128;1.91e-08;1!UBERON:0001703;1.91e-08;1!UBERON:0002241;1.91e-08;1!UBERON:0002619;4.17e-08;22!UBERON:0000956;3.83e-07;25!UBERON:0000203;3.83e-07;25!UBERON:0002021;5.01e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,6.94e-09,20;UBERON:0003112,1.78e-08,1;UBERON:0011158,1.78e-08,1;UBERON:0003128,1.78e-08,1;UBERON:0001703,1.78e-08,1;UBERON:0002241,1.78e-08,1;UBERON:0004761,1.78e-08,1;UBERON:0009617,1.78e-08,1;UBERON:0002022,2.06e-08,1;UBERON:0002619,4.30e-08,22;UBERON:0001017,1.63e-07,81;UBERON:0000956,3.93e-07,25;UBERON:0000203,3.93e-07,25;UBERON:0002021,5.24e-07,5 | |||
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| ||
|short_description=p6@SATB2 | |||
}} | }} |
Latest revision as of 09:14, 19 September 2015
Short description: | p6@SATB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SATB2_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 79bp_to_ENST00000417098, NM_001172509, uc002uuy.1_5end |
EntrezGene: | SATB2 |
HGNC: | 21637 |
UniProt: | Q9UPW6B3KPQ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.53e-15 | 8 |
neuron | 4.71e-12 | 6 |
neuroblast | 4.71e-12 | 6 |
electrically signaling cell | 4.71e-12 | 6 |
neural cell | 7.86e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
neocortex | 6.94e-09 | 20 |
olfactory region | 1.78e-08 | 1 |
primary subdivision of skull | 1.78e-08 | 1 |
cranium | 1.78e-08 | 1 |
neurocranium | 1.78e-08 | 1 |
chondrocranium | 1.78e-08 | 1 |
cartilaginous neurocranium | 1.78e-08 | 1 |
head paraxial mesoderm | 1.78e-08 | 1 |
insula | 2.06e-08 | 1 |
regional part of cerebral cortex | 4.30e-08 | 22 |
central nervous system | 1.63e-07 | 81 |
cerebral cortex | 3.93e-07 | 25 |
pallium | 3.93e-07 | 25 |
occipital lobe | 5.24e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 6.08e-14 | 31 |
leukemia | 7.27e-11 | 39 |
hematologic cancer | 4.66e-08 | 51 |
immune system cancer | 4.66e-08 | 51 |