FFCP PHASE1:Hg19::chr3:161089297..161089312,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:161089297..161089312,-
|short_description=p1@SPTSSB
|description=CAGE_peak_1_at_SPTSSB_5end
|association_with_transcript=0bp_to_ENST00000497374_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=165679 | |EntrezGene=165679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24045 | |HGNC=24045 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000497374_5end | |||
|cluster_id=chr3:161089297..161089312,- | |||
|coexpression_cluster_id=C194 | |||
|description=CAGE_peak_1_at_SPTSSB_5end | |||
|id=chr3:161089297..161089312,- | |||
|ontology_enrichment_celltype=CL:0002076!9.86e-14!43;CL:0000223!1.61e-12!59;CL:0002251!1.31e-07!21;CL:0000240!2.98e-07!6;CL:0000311!2.98e-07!6;CL:0000079!2.98e-07!6;CL:0000237!2.98e-07!6;CL:0000036!2.98e-07!6;CL:0000357!2.98e-07!6;CL:0000114!2.98e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002251;7.99e-10;20!CL:0002076;1.01e-09;42!CL:0002231;2.78e-09;3!CL:0000622;6.80e-09;5!CL:0002623;1.26e-08;3!CL:0000154;2.07e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.89e-11,42;CL:0002251,9.07e-10,20;CL:0002231,2.05e-09,3;CL:0000622,9.35e-09,5;CL:0002623,1.88e-08,3;CL:0000223,2.55e-07,58;CL:0000154,2.69e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!7.18e-12!106;DOID:1749!7.42e-09!14;DOID:5093!5.82e-07!4;DOID:1612!5.82e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;4.13e-13;4!DOID:1612;4.13e-13;4!DOID:1749;1.85e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,4.14e-13,4;DOID:1612,4.14e-13,4;DOID:1749,1.29e-08,14;DOID:305,3.39e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.22e-16!115;UBERON:0004119!6.76e-15!169;UBERON:0000925!6.76e-15!169;UBERON:0006595!6.76e-15!169;UBERON:0004921!1.26e-14!129;UBERON:0004185!1.26e-14!129;UBERON:0001007!2.38e-13!155;UBERON:0001555!2.38e-13!155;UBERON:0007026!2.38e-13!155;UBERON:0000077!7.36e-13!130;UBERON:0001041!1.73e-10!98;UBERON:0000161!4.44e-10!35;UBERON:0001004!5.07e-10!72;UBERON:0003408!5.54e-09!10;UBERON:0001044!5.22e-08!6;UBERON:0003293!5.22e-08!6;UBERON:0003294!5.22e-08!6;UBERON:0010047!5.22e-08!6;UBERON:0000167!5.22e-08!6;UBERON:0005153!9.71e-08!37;UBERON:0000065!1.87e-07!53;UBERON:0005911!3.18e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001041;7.54e-15;14!UBERON:0001044;1.93e-11;6!UBERON:0003293;1.93e-11;6!UBERON:0003294;1.93e-11;6!UBERON:0010047;1.93e-11;6!UBERON:0003408;1.93e-11;6!UBERON:0000167;1.93e-11;6!UBERON:0004921;1.21e-10;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000161,5.75e-16,36;UBERON:0004119,6.38e-13,160;UBERON:0000925,6.38e-13,160;UBERON:0006595,6.38e-13,160;UBERON:0004921,3.55e-12,118;UBERON:0001044,2.70e-11,6;UBERON:0003293,2.70e-11,6;UBERON:0003294,2.70e-11,6;UBERON:0010047,2.70e-11,6;UBERON:0000167,2.70e-11,6;UBERON:0001007,4.48e-11,145;UBERON:0001555,4.48e-11,145;UBERON:0007026,4.48e-11,145;UBERON:0000162,1.76e-09,14;UBERON:0001353,1.76e-09,14;UBERON:0000163,1.76e-09,14;UBERON:0006866,1.76e-09,14;UBERON:0000164,1.76e-09,14;UBERON:0000931,1.76e-09,14;UBERON:0004122,9.06e-09,15;UBERON:0001046,9.59e-09,19;UBERON:0000166,2.82e-08,22;UBERON:0003102,6.27e-08,99;UBERON:0005153,4.17e-07,37 | |||
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| ||
|short_description=p1@SPTSSB | |||
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Latest revision as of 11:14, 16 September 2015
Short description: | p1@SPTSSB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPTSSB_5end |
Coexpression cluster: | C194_MCF7_breast_prostate_Intestinal_diffuse_Wilms_Alveolar |
Association with transcript: | 0bp_to_ENST00000497374_5end |
EntrezGene: | SPTSSB |
HGNC: | 24045 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.89e-11 | 42 |
epithelial cell of alimentary canal | 9.07e-10 | 20 |
epithelial cell of prostate | 2.05e-09 | 3 |
acinar cell | 9.35e-09 | 5 |
acinar cell of salivary gland | 1.88e-08 | 3 |
endodermal cell | 2.55e-07 | 58 |
protein secreting cell | 2.69e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
orifice | 5.75e-16 | 36 |
endoderm-derived structure | 6.38e-13 | 160 |
endoderm | 6.38e-13 | 160 |
presumptive endoderm | 6.38e-13 | 160 |
subdivision of digestive tract | 3.55e-12 | 118 |
saliva-secreting gland | 2.70e-11 | 6 |
gland of oral region | 2.70e-11 | 6 |
gland of foregut | 2.70e-11 | 6 |
oral gland | 2.70e-11 | 6 |
oral cavity | 2.70e-11 | 6 |
digestive system | 4.48e-11 | 145 |
digestive tract | 4.48e-11 | 145 |
primitive gut | 4.48e-11 | 145 |
cloaca | 1.76e-09 | 14 |
anal region | 1.76e-09 | 14 |
embryonic cloaca | 1.76e-09 | 14 |
terminal part of digestive tract | 1.76e-09 | 14 |
primitive urogenital sinus | 1.76e-09 | 14 |
proctodeum | 1.76e-09 | 14 |
genitourinary system | 9.06e-09 | 15 |
hindgut | 9.59e-09 | 19 |
oral opening | 2.82e-08 | 22 |
surface structure | 6.27e-08 | 99 |
epithelial bud | 4.17e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 4.14e-13 | 4 |
breast cancer | 4.14e-13 | 4 |
squamous cell carcinoma | 1.29e-08 | 14 |
carcinoma | 3.39e-08 | 106 |