FFCP PHASE1:Hg19::chr3:16476263..16476279,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:16476263..16476279,-
|short_description=p15@RFTN1
|description=CAGE_peak_15_at_RFTN1_5end
|association_with_transcript=0bp_to_ENST00000495666_5end
|Entrez...") |
No edit summary |
||
(13 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23180 | |EntrezGene=23180 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30278 | |HGNC=30278 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000495666_5end | |||
|cluster_id=chr3:16476263..16476279,- | |||
|coexpression_cluster_id=C78 | |||
|description=CAGE_peak_15_at_RFTN1_5end | |||
|id=chr3:16476263..16476279,- | |||
|ontology_enrichment_celltype=CL:0000945!3.73e-35!24;CL:0000826!3.73e-35!24;CL:0000785!2.22e-18!2;CL:0000955!2.22e-18!2;CL:0000818!2.22e-18!2;CL:0000954!2.22e-18!2;CL:0000816!2.22e-18!2;CL:0000838!2.02e-15!52;CL:0000542!4.21e-15!53;CL:0000051!4.21e-15!53;CL:0000817!1.41e-12!3;CL:0000819!2.16e-10!1;CL:0000946!9.82e-10!1;CL:0000786!9.82e-10!1;CL:0000980!9.82e-10!1;CL:0002087!4.38e-07!119;CL:0002031!9.89e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000785;2.37e-29;1!CL:0000819;2.37e-29;1!CL:0000945;1.92e-19;24!CL:0000047;2.74e-15;2!CL:0000542;1.91e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000819,1.78e-29,1;CL:0000945,1.83e-19,24;CL:0000826,1.83e-19,24;CL:0000785,1.78e-15,2;CL:0000955,1.78e-15,2;CL:0000818,1.78e-15,2;CL:0000954,1.78e-15,2;CL:0000816,1.78e-15,2;CL:0000817,8.99e-11,3;CL:0000838,2.90e-09,52;CL:0000542,4.25e-09,53;CL:0000051,4.25e-09,53 | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.37e-29;1!CL:0000954;2.05e-15;2!CL:0000051;1.91e-08;53 | |||
|ontology_enrichment_disease=DOID:0060058!1.38e-14!10;DOID:0060073!2.16e-10!1;DOID:8675!2.16e-10!1 | |||
|ontology_enrichment_disease_v019=DOID:0060073;2.37e-29;1!DOID:8675;2.37e-29;1!DOID:0060058;3.30e-26;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,1.78e-29,1;DOID:8675,1.78e-29,1;DOID:0060058,3.03e-26,10 | |||
|ontology_enrichment_uberon=UBERON:0001154!2.37e-10!1;UBERON:0001153!2.37e-10!1;UBERON:0002372!2.59e-10!1;UBERON:0001961!2.59e-10!1;UBERON:0001744!2.59e-10!1;UBERON:0001735!2.59e-10!1;UBERON:0000029!4.44e-10!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;2.37e-29;1!UBERON:0001154;2.37e-29;1!UBERON:0001153;2.37e-29;1!UBERON:0009854;2.37e-29;1!UBERON:0001961;2.37e-29;1!UBERON:0001744;2.37e-29;1!UBERON:0001042;2.37e-29;1!UBERON:0001735;2.37e-29;1!UBERON:0006562;2.05e-15;2!UBERON:0009856;2.26e-08;4!UBERON:0004907;6.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,2.37e-29,1;UBERON:0001153,2.37e-29,1;UBERON:0001045,2.37e-29,1;UBERON:0002372,3.16e-29,1;UBERON:0001961,3.16e-29,1;UBERON:0001744,3.16e-29,1;UBERON:0001735,3.16e-29,1;UBERON:0004907,6.04e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916960868975415,0.738905305049512,0.393553906568396,0,0,0,0,0,0,3.56349122669387,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,2.48655523978033,0,0,5.6619010512092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,2.55436704901932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,22.4098381020848,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,2.02056159043763,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916960868975415,0.738905305049512,0.393553906568396,0,0,0,0,0,0,3.56349122669387,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,2.48655523978033,0,0,5.6619010512092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,2.55436704901932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,22.4098381020848,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,2.02056159043763,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p15@RFTN1 | |||
}} | }} |
Latest revision as of 12:32, 16 September 2015
Short description: | p15@RFTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_RFTN1_5end |
Coexpression cluster: | C78_lymphoma_plasma_tonsil_appendix_lymph_seminal_trachea |
Association with transcript: | 0bp_to_ENST00000495666_5end |
EntrezGene: | RFTN1 |
HGNC: | 30278 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 1.78e-29 | 1 |
lymphocyte of B lineage | 1.83e-19 | 24 |
pro-B cell | 1.83e-19 | 24 |
mature B cell | 1.78e-15 | 2 |
pre-B-II cell | 1.78e-15 | 2 |
transitional stage B cell | 1.78e-15 | 2 |
small pre-B-II cell | 1.78e-15 | 2 |
immature B cell | 1.78e-15 | 2 |
precursor B cell | 8.99e-11 | 3 |
lymphoid lineage restricted progenitor cell | 2.90e-09 | 52 |
lymphocyte | 4.25e-09 | 53 |
common lymphoid progenitor | 4.25e-09 | 53 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 2.37e-29 | 1 |
caecum | 2.37e-29 | 1 |
midgut | 2.37e-29 | 1 |
tonsil | 3.16e-29 | 1 |
mucosa-associated lymphoid tissue | 3.16e-29 | 1 |
lymphoid tissue | 3.16e-29 | 1 |
tonsillar ring | 3.16e-29 | 1 |
lower digestive tract | 6.04e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 1.78e-29 | 1 |
lymphosarcoma | 1.78e-29 | 1 |
lymphoma | 3.03e-26 | 10 |