FF:353-12F5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005925 | |||
|accession_numbers=CAGE;DRX008972;DRR009846;DRZ001271;DRZ002654;DRZ012621;DRZ014004 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.44!276.98!Tbx20;;chr8:59799772..59799789,+!p1@Hand2!1.88!205.44!Hand2;;chr14:63864056..63864102,-!p1@Gata4!1.75!94.51!Gata4;;chr17:26978409..26978442,-!p1@Nkx2-5!1.75!55.11!Nkx2-5;;chr11:57645506..57645523,-!p1@Hand1!1.56!34.94!Hand1;;chr2:180069370..180069409,-!p1@Gata5!1.54!38.93!Gata5;;chr12:34642510..34642530,+!p1@Twist1!1.47!87.01!Twist1;;chr11:101755669..101755686,-!p1@Meox1!1.43!45.73!Meox1;;chr5:77543897..77543911,-!p2@Hopx!1.42!47.14!Hopx;;chr6:97879817..97879857,+!p2@Mitf!1.42!25.56!Mitf;;chr1:189821714..189821761,+!p1@Esrrg!1.40!43.86!Esrrg;;chr10:22539932..22539956,-!p1@Tcf21!1.32!52.53!Tcf21;;chr17:26978521..26978536,-!p2@Nkx2-5!1.28!18.06!Nkx2-5;;chr10:119913278..119913298,-!p2@Hmga2!1.21!34.24!Hmga2;;chrX:58146612..58146615,-!p1@Sox3!1.18!14.07!Sox3;;chr7:119885539..119885574,+!p3@Tead1!1.17!13.84!Tead1;;chr4:87452180..87452196,-!p3@Mllt3!1.13!24.63!Mllt3;;chr14:63890491..63890516,-!p2@Gata4!1.12!12.20!Gata4;;chr8:87425854..87425891,+!p1@Klf1!1.11!11.96!Klf1;;chr10:12810631..12810649,+!p1@Plagl1!1.10!305.35!Plagl1;;chr12:3891810..3891829,+!p2@Dnmt3a!1.10!18.29!Dnmt3a;;chr5:77544170..77544181,-!p6@Hopx!1.10!11.49!Hopx;;chr14:63890459..63890484,-!p4@Gata4!1.09!11.26!Gata4;;chr5:120285144..120285160,+!p1@Tbx5!1.08!11.02!Tbx5;;chr9:87626083..87626108,-!p1@Tbx18!1.06!22.98!Tbx18;;chr10:119913310..119913366,-!p1@Hmga2!1.05!80.44!Hmga2;;chr10:30562571..30562597,-!p1@Hey2!1.04!23.92!Hey2;;chr14:63890519..63890539,-!p3@Gata4!1.03!9.62!Gata4;;chr9:87625971..87625992,-!p2@Tbx18!1.02!9.38!Tbx18;;chr10:119913546..119913583,-!p3@Hmga2!1.00!19.23!Hmga2;;chr18:11052642..11052659,+!p1@Gata6!0.99!44.79!Gata6;;chr2:30700788..30700824,+!p2@Prrx2!0.99!13.60!Prrx2;;chr14:63890660..63890687,-!p7@Gata4!0.98!8.44!Gata4;;chr5:24107779..24107825,-!p1@Smarcd3!0.95!55.35!Smarcd3;;chr18:80909801..80909819,-!p1@Nfatc1!0.93!46.44!Nfatc1;;chr4:87452200..87452229,-!p2@Mllt3!0.93!16.65!Mllt3;;chr5:77544108..77544119,-!p7@Hopx!0.93!7.50!Hopx;;chr7:6649134..6649167,-!p1@Zim1!0.91!40.34!Zim1;;chr18:11052456..11052477,+!p3@Gata6!0.91!22.75!Gata6;;chr15:103085660..103085681,-!p1@Nfe2!0.88!10.08!Nfe2;;chr10:119914001..119914078,-!p4@Hmga2!0.87!8.91!Hmga2;;chr3:128917187..128917223,+!p2@Pitx2!0.87!7.50!Pitx2;;chr13:53568104..53568156,-!p1@Msx2!0.86!9.62!Msx2;;chr4:114732112..114732158,+!p1@Tal1!0.85!13.84!Tal1;;chr2:104966766..104966786,+!p1@Wt1!0.85!9.85!Wt1;;chr14:63864337..63864381,-!p6@Gata4!0.84!5.86!Gata4;;chr18:11052485..11052508,+!p2@Gata6!0.83!17.12!Gata6;;chr11:18918434..18918489,-!p3@Meis1!0.83!9.38!Meis1;;chr2:17976799..17976829,+!p5@Mllt10!0.82!7.04!Mllt10;;chr5:77543935..77543947,-!p4@Hopx!0.81!5.39!Hopx;;chr3:29911808..29911833,-!p8@Mecom!0.81!5.39!Mecom;;chr18:11052606..11052633,+!p4@Gata6!0.80!14.07!Gata6;;chrX:137135036..137135064,-!p4@Tsc22d3!0.79!10.55!Tsc22d3;;chr13:72766279..72766296,+!p2@Irx2!0.79!7.97!Irx2;;chr10:30562617..30562637,-!p2@Hey2!0.79!6.57!Hey2;;chr7:17647736..17647772,-!p1@Hif3a!0.78!19.00!Hif3a;;chr14:17407878..17407926,-!p1@Rarb!0.78!11.96!Rarb;;chr2:120365588..120365602,-!p2@Zfp106!0.78!8.91!Zfp106;;chr2:30700881..30700916,+!p1@Prrx2!0.77!9.62!Prrx2;;chr9:87625998..87626007,-!p4@Tbx18!0.77!4.93!Tbx18;;chr2:28477452..28477483,-!p1@Gfi1b!0.76!6.10!Gfi1b;;chr2:104966874..104966907,+!p2@Wt1!0.76!4.69!Wt1;;chrX:7544943..7545001,-!p1@Gata1!0.76!4.69!Gata1;;chr8:87225670..87225697,+!p2@Lyl1!0.75!14.78!Lyl1;;chr12:3891753..3891801,+!p4@Dnmt3a!0.75!7.97!Dnmt3a;;chr4:150482563..150482655,-!p2@Camta1!0.74!17.35!Camta1;;chr9:63869751..63869767,-!p1@Smad6!0.73!12.66!Smad6;;chr9:71743854..71743909,-!p1@Tcf12!0.72!37.76!Tcf12;;chr4:148178559..148178603,+!p1@Casz1!0.72!13.37!Casz1;;chr17:26978449..26978458,-!p3@Nkx2-5!0.72!4.22!Nkx2-5;;chr14:63890691..63890718,-!p8@Gata4!0.72!4.22!Gata4;;chr3:128916868..128916890,+!p1@Pitx2!0.71!5.86!Pitx2;;chrX:45245679..45245702,-!p1@Smarca1!0.70!19.93!Smarca1;;chr8:94881733..94881790,+!p1@Irx5!0.70!8.44!Irx5;;chr14:63890545..63890560,-!p5@Gata4!0.70!3.99!Gata4;;chr1:189821700..189821713,+!p4@Esrrg!0.70!3.99!Esrrg;;chr12:28027561..28027591,-!p1@Sox11!0.69!29.32!Sox11;;chr8:123640063..123640077,+!p1@Foxc2!0.69!7.50!Foxc2;;chr13:31898767..31898785,+!p4@Foxc1!0.69!4.93!Foxc1;;chr1:92895299..92895373,+!p2@Lrrfip1!0.68!89.82!Lrrfip1;;chr14:17407970..17408015,-!p2@Rarb!0.68!11.26!Rarb;;chr17:26978464..26978469,-!p4@Nkx2-5!0.68!3.75!Nkx2-5;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.67!16.18!Ppp1r13l;;chr15:40486883..40486903,+!p4@Zfpm2!0.67!5.16!Zfpm2;;chr13:31898729..31898761,+!p1@Foxc1!0.66!9.85!Foxc1;;chr2:30700857..30700873,+!p3@Prrx2!0.66!5.16!Prrx2;;chr6:53523358..53523388,+!p1@Creb5!0.65!48.31!Creb5;;chr19:10315179..10315241,-!p1@Gm98!0.65!42.45!Gm98;;chr8:94325321..94325366,-!p1@Irx3!0.65!9.38!Irx3;;chr3:66785857..66785873,-!p1@Shox2!0.65!3.52!Shox2;;chr14:64562503..64562524,+!p1@Sox7!0.63!22.28!Sox7;;chr1:193007123..193007139,-!p1@Atf3!0.63!21.34!Atf3;;chrX:45245644..45245666,-!p2@Smarca1!0.63!11.96!Smarca1;;c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p26!0.14!22.05!Zfp26;;chr18:24179250..24179314,-!p1@Zfp191!0.14!19.70!Zfp191;;chr11:69393868..69393884,+!p2@Trp53!0.14!16.42!Trp53;;chr7:17199897..17199955,-!p1@Grlf1!0.14!13.60!Grlf1;;chr8:108939219..108939296,+!p1@Zfp90!0.14!12.43!Zfp90;;chr12:25336211..25336274,+!p1@Klf11!0.14!12.43!Klf11;;chr3:54611674..54611690,-!p2@Rfxap!0.14!8.44!Rfxap;;chr5:39075982..39076052,-!p1@Zfp518b!0.14!8.21!Zfp518b;;chr7:6238191..6238224,+!p1@Zfp667!0.14!6.80!Zfp667;;chr10:62328186..62328219,-!p1@Tet1!0.14!6.80!Tet1;;chr10:79389784..79389833,+!p1@Arid3a!0.14!5.86!Arid3a;;chr6:131338483..131338494,-!p5@Csda!0.14!5.86!Csda;;chr18:83084030..83084056,+!p1@Zfp516!0.14!5.63!Zfp516;;chr6:65728988..65729056,+!p1@Prdm5!0.14!5.39!Prdm5;;chr3:51081199..51081228,-!p3@Elf2!0.14!3.75!Elf2;;chr15:79177964..79177986,+!p1@Maff!0.14!3.52!Maff;;chr4:131817511..131817537,-!p2@Gmeb1!0.14!3.28!Gmeb1;;chrX:71330995..71331011,-!p2@Mecp2!0.14!3.05!Mecp2;;chr16:43363190..43363242,+!p2@Zbtb20!0.14!3.05!Zbtb20;;chr7:37483021..37483078,+!p1@Tshz3!0.14!3.05!Tshz3;;chr2:91864300..91864379,-!p2@Creb3l1!0.14!2.81!Creb3l1;;chr13:67830046..67830082,-!p2@Zfp71-rs1!0.14!2.81!Zfp71-rs1;;chr17:71202822..71202877,-!p3@Tgif1!0.14!2.81!Tgif1;;chr8:81923398..81923409,-!p4@Smad1!0.14!2.35!Smad1;;chr7:30954700..30954715,-!p2@LOC677248,p2@Zfp146!0.14!2.11!Zfp146;;chr4:97444280..97444291,+!p10@Nfia!0.14!2.11!Nfia;;chr1:95651346..95651383,-!p3@Thap4!0.14!2.11!Thap4;;chr12:74147689..74147711,-!p1@Six1!0.14!1.88!Six1;;chr6:128250471..128250519,-!p1@Tead4!0.14!1.64!Tead4;;chr10:92773708..92773734,-!p3@Elk3!0.14!1.64!Elk3;;chr11:44430989..44431015,+!p4@Ebf1!0.14!1.41!Ebf1;;chr15:98701606..98701618,-!p1@Mll2!0.14!1.41!Mll2;;chr4:118954858..118954885,-!p5@Ybx1!0.14!1.41!Ybx1;;chr12:85559762..85559778,-!p5@C130039O16Rik!0.14!1.17!C130039O16Rik;;chr8:81552528..81552553,+!p6@Zfp827!0.14!1.17!Zfp827;;chr7:56136974..56136989,-!p4@E2f8!0.14!1.17!E2f8;;chr11:102178005..102178022,-!p8@Ubtf!0.14!1.17!Ubtf;;chr2:153067138..153067147,-!p3@Plagl2!0.14!1.17!Plagl2;;chr2:162880306..162880319,+!p3@Mybl2!0.14!0.94!Mybl2;;chr2:38206580..38206600,+!p2@Lhx2!0.14!0.70!Lhx2;;chr7:56136349..56136360,-!p5@E2f8!0.14!0.70!E2f8;;chr3:30995296..30995300,+!p6@Skil!0.14!0.70!Skil;;chr10:107769219..107769226,+!p5@Pawr!0.14!0.70!Pawr;;chr11:102177974..102177992,-!p17@Ubtf!0.14!0.70!Ubtf;;chr7:123177377..123177409,-!p7@Sox6!0.14!0.70!Sox6;;chr7:144505957..144505972,-!p2@Ebf3!0.14!0.70!Ebf3;;chr5:31262543..31262555,-!p3@Preb!0.14!0.70!Preb;;chrX:137077134..137077143,-!p10@Tsc22d3!0.14!0.47!Tsc22d3;;chr8:94325446..94325459,-!p8@Irx3!0.14!0.47!Irx3;;chr2:27532912..27532923,+!p9@Rxra!0.14!0.47!Rxra;;chr2:34227273..34227292,-!p4@Pbx3!0.14!0.47!Pbx3;;chr18:35721854..35721914,+!p1@Matr3!0.13!90.53!Matr3;;chr7:133839456..133839523,+!p1@Bola2!0.13!60.51!Bola2;;chr4:149611320..149611348,+!p1@Eno1,p1@Gm5506,p1@LOC100045967,p1@LOC100503183!0.13!52.53!Eno1;;chr19:5912771..5912822,-!p1@Dpf2!0.13!51.60!Dpf2;;chr8:77517558..77517597,+!p1@Hmgxb4!0.13!26.03!Hmgxb4;;chr11:23978022..23978076,+!p1@Bcl11a!0.13!26.03!Bcl11a;;chrX:45947560..45947670,-!p1@Zfp280c!0.13!22.05!Zfp280c;;chr13:44826722..44826742,+!p1@Jarid2!0.13!19.23!Jarid2;;chr5:34163344..34163484,+!p1@Whsc1!0.13!18.76!Whsc1;;chrX:70587953..70587968,+!p1@Zfp275!0.13!12.43!Zfp275;;chr7:24993112..24993158,-!p1@Zfp111!0.13!11.96!Zfp111;;chr1:167932744..167932778,-!p1@Pou2f1!0.13!10.08!Pou2f1;;chr8:112229478..112229536,+!p1@Zfp821!0.13!9.85!Zfp821;;chr9:122832168..122832210,+!p1@Zfp105!0.13!8.68!Zfp105;;chr4:97444590..97444607,+!p6@Nfia!0.13!8.21!Nfia;;chr7:88005795..88005858,+!p1@Zscan2!0.13!7.97!Zscan2;;chr14:55711198..55711258,-!p1@Zfhx2!0.13!6.33!Zfhx2;;chr19:12870598..12870636,-!p1@U05342,p1@Zfp91!0.13!5.39!Zfp91;; | |expression_enrichment_score=chr9:24578720..24578735,-!p1@Tbx20!2.44!276.98!Tbx20;;chr8:59799772..59799789,+!p1@Hand2!1.88!205.44!Hand2;;chr14:63864056..63864102,-!p1@Gata4!1.75!94.51!Gata4;;chr17:26978409..26978442,-!p1@Nkx2-5!1.75!55.11!Nkx2-5;;chr11:57645506..57645523,-!p1@Hand1!1.56!34.94!Hand1;;chr2:180069370..180069409,-!p1@Gata5!1.54!38.93!Gata5;;chr12:34642510..34642530,+!p1@Twist1!1.47!87.01!Twist1;;chr11:101755669..101755686,-!p1@Meox1!1.43!45.73!Meox1;;chr5:77543897..77543911,-!p2@Hopx!1.42!47.14!Hopx;;chr6:97879817..97879857,+!p2@Mitf!1.42!25.56!Mitf;;chr1:189821714..189821761,+!p1@Esrrg!1.40!43.86!Esrrg;;chr10:22539932..22539956,-!p1@Tcf21!1.32!52.53!Tcf21;;chr17:26978521..26978536,-!p2@Nkx2-5!1.28!18.06!Nkx2-5;;chr10:119913278..119913298,-!p2@Hmga2!1.21!34.24!Hmga2;;chrX:58146612..58146615,-!p1@Sox3!1.18!14.07!Sox3;;chr7:119885539..119885574,+!p3@Tead1!1.17!13.84!Tead1;;chr4:87452180..87452196,-!p3@Mllt3!1.13!24.63!Mllt3;;chr14:63890491..63890516,-!p2@Gata4!1.12!12.20!Gata4;;chr8:87425854..87425891,+!p1@Klf1!1.11!11.96!Klf1;;chr10:12810631..12810649,+!p1@Plagl1!1.10!305.35!Plagl1;;chr12:3891810..3891829,+!p2@Dnmt3a!1.10!18.29!Dnmt3a;;chr5:77544170..77544181,-!p6@Hopx!1.10!11.49!Hopx;;chr14:63890459..63890484,-!p4@Gata4!1.09!11.26!Gata4;;chr5:120285144..120285160,+!p1@Tbx5!1.08!11.02!Tbx5;;chr9:87626083..87626108,-!p1@Tbx18!1.06!22.98!Tbx18;;chr10:119913310..119913366,-!p1@Hmga2!1.05!80.44!Hmga2;;chr10:30562571..30562597,-!p1@Hey2!1.04!23.92!Hey2;;chr14:63890519..63890539,-!p3@Gata4!1.03!9.62!Gata4;;chr9:87625971..87625992,-!p2@Tbx18!1.02!9.38!Tbx18;;chr10:119913546..119913583,-!p3@Hmga2!1.00!19.23!Hmga2;;chr18:11052642..11052659,+!p1@Gata6!0.99!44.79!Gata6;;chr2:30700788..30700824,+!p2@Prrx2!0.99!13.60!Prrx2;;chr14:63890660..63890687,-!p7@Gata4!0.98!8.44!Gata4;;chr5:24107779..24107825,-!p1@Smarcd3!0.95!55.35!Smarcd3;;chr18:80909801..80909819,-!p1@Nfatc1!0.93!46.44!Nfatc1;;chr4:87452200..87452229,-!p2@Mllt3!0.93!16.65!Mllt3;;chr5:77544108..77544119,-!p7@Hopx!0.93!7.50!Hopx;;chr7:6649134..6649167,-!p1@Zim1!0.91!40.34!Zim1;;chr18:11052456..11052477,+!p3@Gata6!0.91!22.75!Gata6;;chr15:103085660..103085681,-!p1@Nfe2!0.88!10.08!Nfe2;;chr10:119914001..119914078,-!p4@Hmga2!0.87!8.91!Hmga2;;chr3:128917187..128917223,+!p2@Pitx2!0.87!7.50!Pitx2;;chr13:53568104..53568156,-!p1@Msx2!0.86!9.62!Msx2;;chr4:114732112..114732158,+!p1@Tal1!0.85!13.84!Tal1;;chr2:104966766..104966786,+!p1@Wt1!0.85!9.85!Wt1;;chr14:63864337..63864381,-!p6@Gata4!0.84!5.86!Gata4;;chr18:11052485..11052508,+!p2@Gata6!0.83!17.12!Gata6;;chr11:18918434..18918489,-!p3@Meis1!0.83!9.38!Meis1;;chr2:17976799..17976829,+!p5@Mllt10!0.82!7.04!Mllt10;;chr5:77543935..77543947,-!p4@Hopx!0.81!5.39!Hopx;;chr3:29911808..29911833,-!p8@Mecom!0.81!5.39!Mecom;;chr18:11052606..11052633,+!p4@Gata6!0.80!14.07!Gata6;;chrX:137135036..137135064,-!p4@Tsc22d3!0.79!10.55!Tsc22d3;;chr13:72766279..72766296,+!p2@Irx2!0.79!7.97!Irx2;;chr10:30562617..30562637,-!p2@Hey2!0.79!6.57!Hey2;;chr7:17647736..17647772,-!p1@Hif3a!0.78!19.00!Hif3a;;chr14:17407878..17407926,-!p1@Rarb!0.78!11.96!Rarb;;chr2:120365588..120365602,-!p2@Zfp106!0.78!8.91!Zfp106;;chr2:30700881..30700916,+!p1@Prrx2!0.77!9.62!Prrx2;;chr9:87625998..87626007,-!p4@Tbx18!0.77!4.93!Tbx18;;chr2:28477452..28477483,-!p1@Gfi1b!0.76!6.10!Gfi1b;;chr2:104966874..104966907,+!p2@Wt1!0.76!4.69!Wt1;;chrX:7544943..7545001,-!p1@Gata1!0.76!4.69!Gata1;;chr8:87225670..87225697,+!p2@Lyl1!0.75!14.78!Lyl1;;chr12:3891753..3891801,+!p4@Dnmt3a!0.75!7.97!Dnmt3a;;chr4:150482563..150482655,-!p2@Camta1!0.74!17.35!Camta1;;chr9:63869751..63869767,-!p1@Smad6!0.73!12.66!Smad6;;chr9:71743854..71743909,-!p1@Tcf12!0.72!37.76!Tcf12;;chr4:148178559..148178603,+!p1@Casz1!0.72!13.37!Casz1;;chr17:26978449..26978458,-!p3@Nkx2-5!0.72!4.22!Nkx2-5;;chr14:63890691..63890718,-!p8@Gata4!0.72!4.22!Gata4;;chr3:128916868..128916890,+!p1@Pitx2!0.71!5.86!Pitx2;;chrX:45245679..45245702,-!p1@Smarca1!0.70!19.93!Smarca1;;chr8:94881733..94881790,+!p1@Irx5!0.70!8.44!Irx5;;chr14:63890545..63890560,-!p5@Gata4!0.70!3.99!Gata4;;chr1:189821700..189821713,+!p4@Esrrg!0.70!3.99!Esrrg;;chr12:28027561..28027591,-!p1@Sox11!0.69!29.32!Sox11;;chr8:123640063..123640077,+!p1@Foxc2!0.69!7.50!Foxc2;;chr13:31898767..31898785,+!p4@Foxc1!0.69!4.93!Foxc1;;chr1:92895299..92895373,+!p2@Lrrfip1!0.68!89.82!Lrrfip1;;chr14:17407970..17408015,-!p2@Rarb!0.68!11.26!Rarb;;chr17:26978464..26978469,-!p4@Nkx2-5!0.68!3.75!Nkx2-5;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.67!16.18!Ppp1r13l;;chr15:40486883..40486903,+!p4@Zfpm2!0.67!5.16!Zfpm2;;chr13:31898729..31898761,+!p1@Foxc1!0.66!9.85!Foxc1;;chr2:30700857..30700873,+!p3@Prrx2!0.66!5.16!Prrx2;;chr6:53523358..53523388,+!p1@Creb5!0.65!48.31!Creb5;;chr19:10315179..10315241,-!p1@Gm98!0.65!42.45!Gm98;;chr8:94325321..94325366,-!p1@Irx3!0.65!9.38!Irx3;;chr3:66785857..66785873,-!p1@Shox2!0.65!3.52!Shox2;;chr14:64562503..64562524,+!p1@Sox7!0.63!22.28!Sox7;;chr1:193007123..193007139,-!p1@Atf3!0.63!21.34!Atf3;;chrX:45245644..45245666,-!p2@Smarca1!0.63!11.96!Smarca1;;chr13:73397958..73397994,+!p1@Irx4!0.63!3.28!Irx4;;chr12:84828663..84828679,-!p1@Dpf3!0.62!29.32!Dpf3;;chr1:191994550..191994623,-!p1@Prox1!0.61!25.09!Prox1;;chr2:115891409..115891425,-!p2@Meis2!0.61!10.32!Meis2;;chr2:115891381..115891392,-!p5@Meis2!0.61!6.80!Meis2;;chr8:94325847..94325869,-!p3@Irx3!0.61!5.39!Irx3;;chr1:189432907..189432926,+!p3@Esrrg!0.61!3.05!Esrrg;;chr2:105003277..105003280,+!p5@Wt1!0.61!3.05!Wt1;;chr2:180069423..180069434,-!p2@Gata5!0.61!3.05!Gata5;;chr5:120285130..120285141,+!p3@Tbx5!0.61!3.05!Tbx5;;chr2:152223441..152223465,-!p2@Sox12!0.60!14.54!Sox12;;chr4:13670499..13670526,+!p2@Runx1t1!0.60!7.50!Runx1t1;;chr7:89137163..89137200,-!p1@Bnc1!0.60!3.75!Bnc1;;chr15:103085690..103085710,-!p3@Nfe2!0.60!3.28!Nfe2;;chr4:82151148..82151159,-!p5@Nfib!0.59!9.62!Nfib;;chr10:92773591..92773623,-!p1@Elk3!0.58!76.69!Elk3;;chr7:52471143..52471186,+!p1@Tead2!0.58!36.35!Tead2;;chr7:119822957..119822980,+!p2@Tead1!0.58!16.42!Tead1;;chr18:65741358..65741415,+!p1@Zfp532!0.58!14.31!Zfp532;;chr6:14851440..14851497,+!p2@Foxp2!0.58!7.97!Foxp2;;chr15:40486754..40486771,+!p2@Zfpm2!0.58!5.39!Zfpm2;;chr13:72766250..72766273,+!p1@Irx2!0.58!4.69!Irx2;;chr5:120285161..120285176,+!p2@Tbx5!0.58!2.81!Tbx5;;chr4:87452167..87452178,-!p8@Mllt3!0.58!2.81!Mllt3;;chr12:12948633..12948651,-!p1@Mycn!0.57!31.90!Mycn;;chr2:152223586..152223604,-!p5@Sox12!0.57!4.22!Sox12;;chr17:37139472..37139514,+!p1@Zfp57!0.56!21.81!Zfp57;;chr4:114730254..114730276,+!p2@Tal1!0.56!3.52!Tal1;;chr9:106356211..106356242,+!p1@Pcbp4!0.55!62.15!Pcbp4;;chr8:124806048..124806094,+!p1@Zfpm1!0.55!29.55!Zfpm1;;chr4:120624269..120624302,-!p1@Zfp69!0.55!11.02!Zfp69;;chr2:115891427..115891441,-!p4@Meis2!0.55!6.33!Meis2;;chr8:87225702..87225726,+!p3@Lyl1!0.55!5.86!Lyl1;;chr13:31898637..31898653,+!p2@Foxc1!0.55!5.16!Foxc1;;chrX:103070746..103070764,-!p5@Atrx!0.55!4.22!Atrx;;chr6:53523332..53523343,+!p2@Creb5!0.55!3.99!Creb5;;chr11:18918406..18918431,-!p6@Meis1!0.55!3.75!Meis1;;chr7:19895354..19895369,-!p1@Fosb!0.55!3.75!Fosb;;chr7:17642018..17642045,-!p4@Hif3a!0.55!3.05!Hif3a;;chr12:87702062..87702081,+!p4@Esrrb!0.55!2.58!Esrrb;;chr15:103082088..103082136,-!p2@Nfe2!0.55!2.58!Nfe2;;chr13:78339382..78339420,-!p3@Nr2f1!0.54!3.05!Nr2f1;;chr17:48061584..48061601,-!p2@Foxp4!0.53!19.47!Foxp4;;chr4:120488308..120488366,-!p1@Nfyc!0.53!17.35!Nfyc;;chr2:115890469..115890485,-!p7@Meis2!0.53!4.22!Meis2;;chr2:115890953..115890974,-!p6@Meis2!0.53!3.99!Meis2;;chr5:138187775..138187845,+!p7@Tsc22d4!0.53!3.52!Tsc22d4;;chr2:115891534..115891589,-!p1@Meis2!0.52!42.92!Meis2;;chr5:138187341..138187406,+!p3@Tsc22d4!0.52!31.90!Tsc22d4;;chr4:126700722..126700753,+!p4@Sfpq!0.52!6.80!Sfpq;;chr13:72101178..72101203,-!p1@Irx1!0.52!3.99!Irx1;;chr10:62327990..62328025,-!p2@Tet1!0.52!3.99!Tet1;;chr4:154010228..154010244,-!p4@Prdm16!0.52!3.52!Prdm16;;chr3:130813736..130813752,+!p3@Lef1!0.52!3.52!Lef1;;chr10:30562939..30562969,-!p5@Hey2!0.52!2.35!Hey2;;chr6:97879802..97879816,+!p5@Mitf!0.52!2.35!Mitf;;chr9:87626109..87626120,-!p3@Tbx18!0.52!2.35!Tbx18;;chr2:168415815..168415872,-!p1@Nfatc2!0.51!15.71!Nfatc2;;chr4:13670571..13670625,+!p1@Runx1t1!0.51!7.50!Runx1t1;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.51!3.75!Ppp1r13l;;chr4:3865501..3865548,-!p1@Plag1!0.50!14.31!Plag1;;chr17:35031460..35031518,+!p1@Zbtb12!0.50!13.84!Zbtb12;;chr2:133377954..133377973,+!p1@Bmp2!0.50!8.68!Bmp2;;chr4:148178529..148178548,+!p3@Casz1!0.50!6.10!Casz1;;chr13:72101161..72101177,-!p2@Irx1!0.50!3.28!Irx1;;chr3:29912058..29912071,-!p6@Mecom!0.50!2.58!Mecom;;chr2:152223469..152223512,-!p1@Sox12!0.49!14.31!Sox12;;chr17:46693078..46693097,-!p3@Srf!0.49!10.79!Srf;;chr6:14851287..14851342,+!p1@Foxp2!0.49!8.68!Foxp2;;chr8:81552216..81552249,+!p3@Zfp827!0.49!7.27!Zfp827;;chr9:96653072..96653154,-!p1@Zbtb38!0.49!6.80!Zbtb38;;chr13:22036953..22037009,+!p1@Zfp184!0.49!6.80!Zfp184;;chr9:63869729..63869749,-!p4@Smad6!0.49!4.93!Smad6;;chr8:123608252..123608268,+!p1@Foxf1a!0.49!3.52!Foxf1a;;chr4:135129538..135129558,-!p1@Grhl3!0.49!3.52!Grhl3;;chr3:30408384..30408431,-!p4@Mecom!0.49!2.81!Mecom;;chr10:119913266..119913277,-!p6@Hmga2!0.49!2.11!Hmga2;;chr12:77278238..77278252,-!p1@Esr2!0.49!2.11!Esr2;;chr4:133276801..133276891,-!p3@Arid1a!0.48!28.38!Arid1a;;chrX:48558950..48559016,-!p1@Mbnl3!0.48!8.21!Mbnl3;;chr13:117099847..117099907,-!p1@Isl1!0.48!4.46!Isl1;;chr13:78339428..78339466,-!p2@Nr2f1!0.48!3.05!Nr2f1;;chr6:52154414..52154462,-!p1@Hoxa5!0.48!3.05!Hoxa5;;chr15:40486566..40486600,+!p1@Zfpm2!0.47!15.48!Zfpm2;;chr9:63869850..63869873,-!p2@Smad6!0.47!7.27!Smad6;;chr5:77524304..77524315,-!p5@Hopx!0.47!4.93!Hopx;;chr11:23978111..23978134,+!p3@Bcl11a!0.47!4.93!Bcl11a;;chr9:63869802..63869815,-!p3@Smad6!0.47!4.69!Smad6;;chr7:17642053..17642066,-!p2@Hif3a!0.47!3.05!Hif3a;;chr10:119913792..119913820,-!p5@Hmga2!0.46!3.75!Hmga2;;chr1:165243591..165243625,-!p2@Prrx1!0.46!3.28!Prrx1;;chr1:140739014..140739032,-!p1@Lhx9!0.46!2.58!Lhx9;;chr2:152223734..152223756,-!p6@Sox12!0.46!2.35!Sox12;;chr2:30700830..30700843,+!p4@Prrx2!0.46!1.88!Prrx2;;chr1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| ||
Line 41: | Line 44: | ||
|is_a=EFO:0002091;;FF:0011318 | |is_a=EFO:0002091;;FF:0011318 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11015 | |||
|library_id_phase_based=2:CNhs11015 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;353 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;353 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E12.CNhs11015.353-12F5.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E12.CNhs11015.353-12F5.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E12.CNhs11015.353-12F5.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E12.CNhs11015.353-12F5.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/heart%252c%2520embryo%2520E12.CNhs11015.353-12F5.mm9.nobarcode.rdna.fa.gz | |||
|name=heart, embryo E12 | |name=heart, embryo E12 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11015,LSID731,release008,COMPLETED | |profile_hcage=CNhs11015,LSID731,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.050697319656798,0,0,0,0,0.0457501310086346,1.30246751905958,0,0.0126432881548696,0,0,0.951094281105133,0,0,0,0,0,0,-0.0248561466440979,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0733622750997791,0,0,0,0,0,-0.117822463478557,-0.00909028292942954,-0.0178031846774569,0.428413163073311,0.0175084936344772,0,0,0,0,0,0,0,0,0,0,0,0,0.315498753775328,0,0,0,0,0.0253325036432612,0,0.151074083839566,0,0,0,0.215791235851563,-0.0232735256945578,0.473694024652728,0.204002761083699,0,0.0915002620172692,-0.013928657263616,-0.117716914593033,0.287377131644828,0,0,-0.194015533628832,0.0358701866832409,0.0126686671773617,0,0,0,0,0,0.0915002620172692,0.0437264914184948,0.281917055907157,0.00446775055722315,0,0,0,0,0 | |repeat_enrich_byfamily=0.050697319656798,0,0,0,0,0.0457501310086346,1.30246751905958,0,0.0126432881548696,0,0,0.951094281105133,0,0,0,0,0,0,-0.0248561466440979,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0733622750997791,0,0,0,0,0,-0.117822463478557,-0.00909028292942954,-0.0178031846774569,0.428413163073311,0.0175084936344772,0,0,0,0,0,0,0,0,0,0,0,0,0.315498753775328,0,0,0,0,0.0253325036432612,0,0.151074083839566,0,0,0,0.215791235851563,-0.0232735256945578,0.473694024652728,0.204002761083699,0,0.0915002620172692,-0.013928657263616,-0.117716914593033,0.287377131644828,0,0,-0.194015533628832,0.0358701866832409,0.0126686671773617,0,0,0,0,0,0.0915002620172692,0.0437264914184948,0.281917055907157,0.00446775055722315,0,0,0,0,0 | ||
Line 83: | Line 97: | ||
|top_motifs=HOX{A5,B5}:3.71065490525;GATA4:3.14312851544;EVI1:2.67523938171;IKZF2:2.32138653622;SRF:2.17496995833;MEF2{A,B,C,D}:1.96264023617;NR3C1:1.73944018761;ALX1:1.67873384698;GATA6:1.65732888735;UFEwm:1.60408363884;NR5A1,2:1.46452788795;PITX1..3:1.43401050173;POU3F1..4:1.41037805444;NKX2-1,4:1.38029846185;PRDM1:1.35617653943;HIF1A:1.34154541339;NKX2-2,8:1.31386375613;FOXL1:1.29542239316;RXR{A,B,G}:1.28167986672;TEAD1:1.24558140414;T:1.03260323945;KLF4:1.0124313107;GFI1:0.974244210768;NKX3-1:0.922304743858;NFE2L1:0.916231347174;MZF1:0.866983660604;FOXP1:0.803757117472;HMGA1,2:0.76933438401;NR6A1:0.752147054589;CDC5L:0.750085042591;ZNF384:0.738360766586;PATZ1:0.724954349408;E2F1..5:0.72125110107;ZBTB16:0.704879708503;TOPORS:0.676745899332;CDX1,2,4:0.67156780241;MYBL2:0.656805890839;NFATC1..3:0.655808353158;RREB1:0.646786467264;NANOG{mouse}:0.637412998907;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.637321549414;ZNF143:0.634327316638;CUX2:0.607669116816;NKX6-1,2:0.582489930733;SOX5:0.559986631719;NFY{A,B,C}:0.549136269762;TEF:0.544216181023;GCM1,2:0.542582148311;IKZF1:0.534383946958;SOX{8,9,10}:0.513735494708;SOX17:0.510650077829;EN1,2:0.452074484168;PAX4:0.421439400047;MAZ:0.359984760749;GFI1B:0.338121929751;ESRRA:0.32771081304;EBF1:0.324662242848;TGIF1:0.323568299788;SOX2:0.314814834072;TFAP4:0.310602362821;TLX1..3_NFIC{dimer}:0.23935295886;NRF1:0.166712025884;POU1F1:0.164392581377;PDX1:0.160326595447;FOX{I1,J2}:0.156323387034;ATF2:0.155297169657;ZIC1..3:0.150728502066;SPIB:0.141110043425;NANOG:0.10995434874;BREu{core}:0.108970668489;GTF2A1,2:0.10454848297;FOXD3:0.0822833696887;HOX{A4,D4}:0.0454822339103;EP300:0.0342209437013;ARID5B:0.0316184872051;STAT1,3:0.00754494894442;CRX:-0.00331952973318;TFDP1:-0.0096008692651;HOXA9_MEIS1:-0.0204695806407;XCPE1{core}:-0.039746690988;FOXO1,3,4:-0.0482887240511;FOSL2:-0.0522491800461;MYB:-0.080901971018;SPI1:-0.0894888277786;TBP:-0.0934537963821;AIRE:-0.102360101523;ZFP161:-0.113661373409;GTF2I:-0.114146597353;NHLH1,2:-0.117297973573;NKX3-2:-0.119593464361;ELF1,2,4:-0.123697291109;HBP1_HMGB_SSRP1_UBTF:-0.123725401866;NFE2L2:-0.138729704236;ONECUT1,2:-0.157993611943;HIC1:-0.158835703558;YY1:-0.165908116384;FOXP3:-0.184549965351;HES1:-0.189928030851;PAX8:-0.203106013872;MAFB:-0.204989466956;PAX5:-0.205312095507;HSF1,2:-0.212541093329;PAX2:-0.213910489121;OCT4_SOX2{dimer}:-0.217388162363;ZNF238:-0.226327267041;GLI1..3:-0.227446466686;TFCP2:-0.228290764478;FOXA2:-0.253285980137;EGR1..3:-0.273082947313;ELK1,4_GABP{A,B1}:-0.273856268044;SMAD1..7,9:-0.277457889993;HAND1,2:-0.288594057147;RFX2..5_RFXANK_RFXAP:-0.299820086203;NKX2-3_NKX2-5:-0.30501464909;CREB1:-0.317529687539;ETS1,2:-0.318667748111;TFAP2{A,C}:-0.321398593633;TFAP2B:-0.332266188728;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.332375937063;FOX{F1,F2,J1}:-0.336961667665;DBP:-0.339997942536;SP1:-0.36805098369;MTE{core}:-0.370010889276;VSX1,2:-0.376818125563;AHR_ARNT_ARNT2:-0.377741269678;ATF4:-0.39932249139;NR1H4:-0.410414366368;JUN:-0.413827729895;TBX4,5:-0.416067823859;RFX1:-0.429891850446;RORA:-0.443949363157;LEF1_TCF7_TCF7L1,2:-0.449782017106;BPTF:-0.45601954788;AR:-0.459698837579;HNF1A:-0.464829671078;bHLH_family:-0.48896373056;ZBTB6:-0.491745783386;MTF1:-0.501733966286;ESR1:-0.523239173215;MED-1{core}:-0.529000603364;ZNF148:-0.533778569229;PAX1,9:-0.580774867765;HNF4A_NR2F1,2:-0.580800989118;MYFfamily:-0.583193292088;IRF1,2:-0.591073701468;NFE2:-0.592052095027;TP53:-0.610399509787;RUNX1..3:-0.619694315225;GZF1:-0.628758249634;FOX{D1,D2}:-0.632234377667;REST:-0.697384766013;PAX6:-0.702047974932;IRF7:-0.703493358433;FOXQ1:-0.726021196453;POU5F1:-0.740420084425;HLF:-0.751945253448;ATF5_CREB3:-0.756350928774;BACH2:-0.762026876259;NFKB1_REL_RELA:-0.763284112252;RXRA_VDR{dimer}:-0.772917255312;PBX1:-0.777811574041;ALX4:-0.780342489883;PRRX1,2:-0.788505594483;ZNF423:-0.822136525588;SREBF1,2:-0.840411204501;NFIL3:-0.848996408343;POU2F1..3:-0.88249428614;POU6F1:-0.945317607076;STAT5{A,B}:-0.951097726493;HMX1:-0.97905762416;ZEB1:-0.984291782866;LHX3,4:-0.998342099945;SNAI1..3:-1.03747183138;TLX2:-1.05398451469;FOS_FOS{B,L1}_JUN{B,D}:-1.07287464552;DMAP1_NCOR{1,2}_SMARC:-1.11462057806;FOXN1:-1.14501359091;ADNP_IRX_SIX_ZHX:-1.16581234109;PPARG:-1.16951894152;RBPJ:-1.18259732325;CEBPA,B_DDIT3:-1.20301082084;NFIX:-1.23847722456;LMO2:-1.24203084429;MYOD1:-1.2658994222;ATF6:-1.43814584297;TAL1_TCF{3,4,12}:-1.44827590843;FOXM1:-1.50536560395;STAT2,4,6:-1.53132582689;SPZ1:-1.57569635422 | |top_motifs=HOX{A5,B5}:3.71065490525;GATA4:3.14312851544;EVI1:2.67523938171;IKZF2:2.32138653622;SRF:2.17496995833;MEF2{A,B,C,D}:1.96264023617;NR3C1:1.73944018761;ALX1:1.67873384698;GATA6:1.65732888735;UFEwm:1.60408363884;NR5A1,2:1.46452788795;PITX1..3:1.43401050173;POU3F1..4:1.41037805444;NKX2-1,4:1.38029846185;PRDM1:1.35617653943;HIF1A:1.34154541339;NKX2-2,8:1.31386375613;FOXL1:1.29542239316;RXR{A,B,G}:1.28167986672;TEAD1:1.24558140414;T:1.03260323945;KLF4:1.0124313107;GFI1:0.974244210768;NKX3-1:0.922304743858;NFE2L1:0.916231347174;MZF1:0.866983660604;FOXP1:0.803757117472;HMGA1,2:0.76933438401;NR6A1:0.752147054589;CDC5L:0.750085042591;ZNF384:0.738360766586;PATZ1:0.724954349408;E2F1..5:0.72125110107;ZBTB16:0.704879708503;TOPORS:0.676745899332;CDX1,2,4:0.67156780241;MYBL2:0.656805890839;NFATC1..3:0.655808353158;RREB1:0.646786467264;NANOG{mouse}:0.637412998907;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.637321549414;ZNF143:0.634327316638;CUX2:0.607669116816;NKX6-1,2:0.582489930733;SOX5:0.559986631719;NFY{A,B,C}:0.549136269762;TEF:0.544216181023;GCM1,2:0.542582148311;IKZF1:0.534383946958;SOX{8,9,10}:0.513735494708;SOX17:0.510650077829;EN1,2:0.452074484168;PAX4:0.421439400047;MAZ:0.359984760749;GFI1B:0.338121929751;ESRRA:0.32771081304;EBF1:0.324662242848;TGIF1:0.323568299788;SOX2:0.314814834072;TFAP4:0.310602362821;TLX1..3_NFIC{dimer}:0.23935295886;NRF1:0.166712025884;POU1F1:0.164392581377;PDX1:0.160326595447;FOX{I1,J2}:0.156323387034;ATF2:0.155297169657;ZIC1..3:0.150728502066;SPIB:0.141110043425;NANOG:0.10995434874;BREu{core}:0.108970668489;GTF2A1,2:0.10454848297;FOXD3:0.0822833696887;HOX{A4,D4}:0.0454822339103;EP300:0.0342209437013;ARID5B:0.0316184872051;STAT1,3:0.00754494894442;CRX:-0.00331952973318;TFDP1:-0.0096008692651;HOXA9_MEIS1:-0.0204695806407;XCPE1{core}:-0.039746690988;FOXO1,3,4:-0.0482887240511;FOSL2:-0.0522491800461;MYB:-0.080901971018;SPI1:-0.0894888277786;TBP:-0.0934537963821;AIRE:-0.102360101523;ZFP161:-0.113661373409;GTF2I:-0.114146597353;NHLH1,2:-0.117297973573;NKX3-2:-0.119593464361;ELF1,2,4:-0.123697291109;HBP1_HMGB_SSRP1_UBTF:-0.123725401866;NFE2L2:-0.138729704236;ONECUT1,2:-0.157993611943;HIC1:-0.158835703558;YY1:-0.165908116384;FOXP3:-0.184549965351;HES1:-0.189928030851;PAX8:-0.203106013872;MAFB:-0.204989466956;PAX5:-0.205312095507;HSF1,2:-0.212541093329;PAX2:-0.213910489121;OCT4_SOX2{dimer}:-0.217388162363;ZNF238:-0.226327267041;GLI1..3:-0.227446466686;TFCP2:-0.228290764478;FOXA2:-0.253285980137;EGR1..3:-0.273082947313;ELK1,4_GABP{A,B1}:-0.273856268044;SMAD1..7,9:-0.277457889993;HAND1,2:-0.288594057147;RFX2..5_RFXANK_RFXAP:-0.299820086203;NKX2-3_NKX2-5:-0.30501464909;CREB1:-0.317529687539;ETS1,2:-0.318667748111;TFAP2{A,C}:-0.321398593633;TFAP2B:-0.332266188728;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.332375937063;FOX{F1,F2,J1}:-0.336961667665;DBP:-0.339997942536;SP1:-0.36805098369;MTE{core}:-0.370010889276;VSX1,2:-0.376818125563;AHR_ARNT_ARNT2:-0.377741269678;ATF4:-0.39932249139;NR1H4:-0.410414366368;JUN:-0.413827729895;TBX4,5:-0.416067823859;RFX1:-0.429891850446;RORA:-0.443949363157;LEF1_TCF7_TCF7L1,2:-0.449782017106;BPTF:-0.45601954788;AR:-0.459698837579;HNF1A:-0.464829671078;bHLH_family:-0.48896373056;ZBTB6:-0.491745783386;MTF1:-0.501733966286;ESR1:-0.523239173215;MED-1{core}:-0.529000603364;ZNF148:-0.533778569229;PAX1,9:-0.580774867765;HNF4A_NR2F1,2:-0.580800989118;MYFfamily:-0.583193292088;IRF1,2:-0.591073701468;NFE2:-0.592052095027;TP53:-0.610399509787;RUNX1..3:-0.619694315225;GZF1:-0.628758249634;FOX{D1,D2}:-0.632234377667;REST:-0.697384766013;PAX6:-0.702047974932;IRF7:-0.703493358433;FOXQ1:-0.726021196453;POU5F1:-0.740420084425;HLF:-0.751945253448;ATF5_CREB3:-0.756350928774;BACH2:-0.762026876259;NFKB1_REL_RELA:-0.763284112252;RXRA_VDR{dimer}:-0.772917255312;PBX1:-0.777811574041;ALX4:-0.780342489883;PRRX1,2:-0.788505594483;ZNF423:-0.822136525588;SREBF1,2:-0.840411204501;NFIL3:-0.848996408343;POU2F1..3:-0.88249428614;POU6F1:-0.945317607076;STAT5{A,B}:-0.951097726493;HMX1:-0.97905762416;ZEB1:-0.984291782866;LHX3,4:-0.998342099945;SNAI1..3:-1.03747183138;TLX2:-1.05398451469;FOS_FOS{B,L1}_JUN{B,D}:-1.07287464552;DMAP1_NCOR{1,2}_SMARC:-1.11462057806;FOXN1:-1.14501359091;ADNP_IRX_SIX_ZHX:-1.16581234109;PPARG:-1.16951894152;RBPJ:-1.18259732325;CEBPA,B_DDIT3:-1.20301082084;NFIX:-1.23847722456;LMO2:-1.24203084429;MYOD1:-1.2658994222;ATF6:-1.43814584297;TAL1_TCF{3,4,12}:-1.44827590843;FOXM1:-1.50536560395;STAT2,4,6:-1.53132582689;SPZ1:-1.57569635422 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:353-12F5;search_select_hide=table117:353-12F5 | |||
}} | }} |
Latest revision as of 19:10, 4 June 2020
Name: | heart, embryo E12 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs11015 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11015
0 | 0 |
1 | 0 |
10 | 0.0915 |
100 | 0 |
1000 | 0 |
1001 | 0.26 |
1002 | 0.465 |
1003 | 0.00475 |
1004 | 0 |
1005 | -0.0389 |
1006 | 0.231 |
1007 | 0.0156 |
1008 | 0 |
1009 | 0.00751 |
101 | 0.0744 |
1010 | 0 |
1011 | -0.0226 |
1012 | 0 |
1013 | -0.217 |
1014 | 0.539 |
1015 | 0.226 |
1016 | 0.161 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.137 |
1023 | 0 |
1024 | -0.0361 |
1025 | 0.0915 |
1026 | 0 |
1027 | 0 |
1028 | 0 |
1029 | 0.238 |
103 | 0.015 |
1030 | 0 |
1031 | 0.419 |
1032 | -0.0166 |
1033 | 0.00343 |
1034 | 0 |
1035 | 0.422 |
1036 | -0.0466 |
1037 | 0 |
1038 | -0.0129 |
1039 | 0.00774 |
104 | 0 |
1040 | 0.0717 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11015
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11015
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.742 |
10 | 10 | 0.923 |
100 | 100 | 0.905 |
101 | 101 | 0.757 |
102 | 102 | 0.298 |
103 | 103 | 0.329 |
104 | 104 | 0.565 |
105 | 105 | 0.846 |
106 | 106 | 0.775 |
107 | 107 | 0.924 |
108 | 108 | 0.8 |
109 | 109 | 0.984 |
11 | 11 | 0.195 |
110 | 110 | 0.269 |
111 | 111 | 0.607 |
112 | 112 | 0.392 |
113 | 113 | 0.503 |
114 | 114 | 0.938 |
115 | 115 | 0.535 |
116 | 116 | 0.651 |
117 | 117 | 0.396 |
118 | 118 | 0.457 |
119 | 119 | 0.357 |
12 | 12 | 0.388 |
120 | 120 | 0.372 |
121 | 121 | 0.845 |
122 | 122 | 0.289 |
123 | 123 | 0.0681 |
124 | 124 | 0.937 |
125 | 125 | 0.749 |
126 | 126 | 0.732 |
127 | 127 | 0.248 |
128 | 128 | 0.296 |
129 | 129 | 0.355 |
13 | 13 | 0.00201 |
130 | 130 | 0.244 |
131 | 131 | 0.458 |
132 | 132 | 0.315 |
133 | 133 | 0.692 |
134 | 134 | 0.587 |
135 | 135 | 0.721 |
136 | 136 | 0.0227 |
137 | 137 | 0.87 |
138 | 138 | 0.153 |
139 | 139 | 0.932 |
14 | 14 | 0.483 |
140 | 140 | 0.747 |
141 | 141 | 0.209 |
142 | 142 | 0.738 |
143 | 143 | 0.646 |
144 | 144 | 0.0878 |
145 | 145 | 0.0637 |
146 | 146 | 0.183 |
147 | 147 | 0.871 |
148 | 148 | 0.622 |
149 | 149 | 0.989 |
15 | 15 | 0.237 |
150 | 150 | 0.738 |
151 | 151 | 0.172 |
152 | 152 | 0.281 |
153 | 153 | 0.264 |
154 | 154 | 0.742 |
155 | 155 | 0.686 |
156 | 156 | 0.0143 |
157 | 157 | 0.435 |
158 | 158 | 0.431 |
159 | 159 | 0.171 |
160 | 160 | 0.274 |
161 | 161 | 0.66 |
162 | 162 | 0.77 |
163 | 163 | 0.564 |
164 | 164 | 0.394 |
165 | 165 | 0.197 |
166 | 166 | 0.37 |
167 | 167 | 0.765 |
168 | 168 | 0.686 |
169 | 169 | 0.113 |
17 | 17 | 0.234 |
18 | 18 | 0.525 |
19 | 19 | 0.178 |
2 | 2 | 0.526 |
20 | 20 | 0.146 |
21 | 21 | 0.444 |
22 | 22 | 0.634 |
23 | 23 | 0.196 |
24 | 24 | 0.472 |
25 | 25 | 0.328 |
26 | 26 | 0.0253 |
27 | 27 | 0.19 |
28 | 28 | 0.476 |
29 | 29 | 0.207 |
3 | 3 | 0.961 |
30 | 30 | 0.0936 |
31 | 31 | 0.758 |
32 | 32 | 0.482 |
33 | 33 | 0.135 |
34 | 34 | 0.772 |
35 | 35 | 0.91 |
36 | 36 | 0.156 |
37 | 37 | 0.66 |
38 | 38 | 0.173 |
39 | 39 | 0.351 |
4 | 4 | 0.573 |
40 | 40 | 0.00488 |
41 | 41 | 0.871 |
42 | 42 | 0.899 |
43 | 43 | 0.643 |
44 | 44 | 0.468 |
45 | 45 | 0.0729 |
46 | 46 | 0.643 |
47 | 47 | 0.586 |
48 | 48 | 0.414 |
49 | 49 | 0.818 |
5 | 5 | 0.943 |
50 | 50 | 0.485 |
51 | 51 | 0.975 |
52 | 52 | 0.786 |
53 | 53 | 0.552 |
54 | 54 | 0.833 |
55 | 55 | 0.201 |
56 | 56 | 0.999 |
57 | 57 | 0.287 |
58 | 58 | 0.638 |
59 | 59 | 0.4 |
6 | 6 | 0.194 |
60 | 60 | 0.722 |
61 | 61 | 0.415 |
62 | 62 | 0.569 |
63 | 63 | 0.865 |
64 | 64 | 0.469 |
65 | 65 | 0.168 |
66 | 66 | 0.614 |
67 | 67 | 0.607 |
68 | 68 | 0.789 |
69 | 69 | 0.212 |
7 | 7 | 0.56 |
70 | 70 | 0.0224 |
71 | 71 | 0.00663 |
72 | 72 | 0.0651 |
73 | 73 | 0.813 |
74 | 74 | 0.968 |
75 | 75 | 0.785 |
76 | 76 | 0.346 |
77 | 77 | 0.317 |
78 | 78 | 0.647 |
79 | 79 | 0.201 |
8 | 8 | 0.616 |
80 | 80 | 0.0119 |
81 | 81 | 0.771 |
82 | 82 | 0.981 |
83 | 83 | 0.934 |
84 | 84 | 0.968 |
85 | 85 | 0.883 |
86 | 86 | 0.763 |
87 | 87 | 4.15479e-5 |
88 | 88 | 0.315 |
89 | 89 | 0.128 |
9 | 9 | 0.974 |
90 | 90 | 0.706 |
91 | 91 | 0.256 |
92 | 92 | 0.998 |
93 | 93 | 0.636 |
94 | 94 | 0.182 |
95 | 95 | 0.646 |
96 | 96 | 0.394 |
97 | 97 | 0.14 |
98 | 98 | 0.307 |
99 | 99 | 0.663 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11015
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000295 (mouse embryonic day 12 sample)
0011318 (mouse heart- embryo E12 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)