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MCL coexpression mm9:58: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000344!1.09e-33!15;UBERON:0001242!7.40e-25!13;UBERON:0000060!7.40e-25!13;UBERON:0001262!7.40e-25!13;UBERON:0004786!7.40e-25!13;UBERON:0004923!1.35e-20!24;UBERON:0000160!1.10e-18!31;UBERON:0000331!1.02e-15!3;UBERON:0002116!1.02e-15!3;UBERON:0001204!1.02e-15!3;UBERON:0001168!1.02e-15!3;UBERON:0003350!8.18e-15!9;UBERON:0004808!8.18e-15!9;UBERON:0001277!8.18e-15!9;UBERON:0000485!4.20e-12!11;UBERON:0002108!6.15e-12!4;UBERON:0005409!8.14e-12!47;UBERON:0001962!1.03e-11!2;UBERON:0001961!1.03e-11!2;UBERON:0001744!1.03e-11!2;UBERON:0002465!4.27e-08!3
|tfbs_overrepresentation_for_novel_motifs=0.189556,0.0394738,0.0163671,0.884125,0.511542,0.286328,0.109963,0.637661,0.264755,0.0927484,0.103116,0.343194,0.127311,0.0730695,0.778763,0,0.031945,0.904758,0.641335,0.193012,0.661883,0.588225,0.126397,0.40695,0.367101,0.0550111,0.21437,0.0703912,0.106657,1.15342,0.41993,0.328854,0.215425,0.469957,0.0551603,0.601019,0.0108619,0.0896852,1.01455,1.58437,0.479776,0.0162704,0.805335,2.02206,0.000920491,0.206633,0.144982,0.218133,0.501075,0.825554,0.0677819,0.0772925,0.284762,0.0828928,0.439329,0.0802628,1.43002,0.132791,0.163541,0.00648729,0.157375,0.372137,1.6618,0.36202,0.0923777,0.177865,0.424729,0.209154,0.681718,0.128957,0.0880653,1.06483,0.000914433,0.113088,0.000139375,0.113817,2.79629,0.129777,0.426764,1.54721,0.375396,0.0941487,0.04153,0.561417,0.0106287,4.42698e-06,3.1543e-05,0.20179,0.035966,0.849105,0.256044,0.0546822,0.562069,1.0792,7.66421e-06,1.10272,1.18246,0.360353,0.540586,1.11878,0.368465,0.180991,0.0738461,0.247898,0.13907,0.00688565,0.0490222,0.207841,0.073769,0.195536,0.239219,0.19288,0.848039,1.01348,0.557527,1.23106,5.40582e-06,0.251197,0.08129,0.0869324,0.0279786,0.310436,0.930766,0.495058,0.660079,0.436148,0.0350055,0.0288367,0.189586,0.828282,0.573772,0.0971091,0.375551,0.512735,0.285542,1.83994,0.640376,0.449707,0.235869,0.611933,0.294114,0.432425,0.200721,0.555356,0.131358,0.330763,1.24481,0.577642,2.07443,0.0132446,0.0872887,2.2124e-07,0.408444,0.0919605,0.250534,0.57835,0.492259,1.05715,0.255148,0.0611914,0.245117,0.496727,0.911917,0.16444,0.994453,0.478728,0.0285836,0.616845,0.0797059
|tfbs_overrepresentation_jaspar=MA0003.1;5.83291e-07,MA0004.1;0.0676594,MA0006.1;0.00570116,MA0007.1;0.197355,MA0009.1;1.18524,MA0014.1;1.20959e-06,MA0017.1;2.41854,MA0019.1;0.182254,MA0024.1;0.478369,MA0025.1;0.368652,MA0027.1;1.07171,MA0028.1;0.000858261,MA0029.1;0.13643,MA0030.1;0.143455,MA0031.1;0.0133632,MA0038.1;0.540731,MA0040.1;0.233561,MA0041.1;0.301597,MA0042.1;0.535297,MA0043.1;0.615704,MA0046.1;2.66209,MA0048.1;0.0543062,MA0050.1;0.817096,MA0051.1;0.974943,MA0052.1;0.664674,MA0055.1;0.0151824,MA0056.1;0,MA0057.1;0.00437291,MA0058.1;0.0155642,MA0059.1;0.00229396,MA0060.1;0.00121989,MA0061.1;22.6476,MA0063.1;0,MA0066.1;1.86407,MA0067.1;0.0756081,MA0068.1;0.240055,MA0069.1;0.245785,MA0070.1;0.407346,MA0071.1;3.17216,MA0072.1;0.219764,MA0073.1;0,MA0074.1;0.100425,MA0076.1;5.40159e-05,MA0077.1;0.798272,MA0078.1;0.949909,MA0081.1;0.478625,MA0083.1;0.07295,MA0084.1;0.242854,MA0087.1;0.295282,MA0088.1;0.100148,MA0089.1;0,MA0090.1;2.03999,MA0091.1;0.0839239,MA0092.1;1.56228,MA0093.1;0.0193188,MA0095.1;0,MA0098.1;0,MA0100.1;0.143353,MA0101.1;18.1026,MA0103.1;1.71471,MA0105.1;4.86554,MA0106.1;2.51443,MA0107.1;25.5607,MA0108.2;3.98134,MA0109.1;0,MA0111.1;0.124073,MA0113.1;0.131742,MA0114.1;5.07178,MA0115.1;1.29049,MA0116.1;0.195249,MA0117.1;0.539401,MA0119.1;0.937188,MA0122.1;1.6332,MA0124.1;0.801574,MA0125.1;0.344348,MA0130.1;0,MA0131.1;0.0433191,MA0132.1;0,MA0133.1;0,MA0135.1;0.0211899,MA0136.1;0.759301,MA0139.1;0.000783549,MA0140.1;1.16918,MA0141.1;2.03861,MA0142.1;0.707846,MA0143.1;0.530621,MA0144.1;3.24253,MA0145.1;0.0224822,MA0146.1;0.00479742,MA0147.1;0.0384915,MA0148.1;0.139403,MA0149.1;0.00358492,MA0062.2;0.00458007,MA0035.2;1.99745,MA0039.2;0.00592618,MA0138.2;0.163095,MA0002.2;0.0229665,MA0137.2;1.55895,MA0104.2;0.0178928,MA0047.2;0.389102,MA0112.2;0.312843,MA0065.2;0.697374,MA0150.1;2.05217,MA0151.1;0,MA0152.1;0.537926,MA0153.1;1.98516,MA0154.1;1.20754,MA0155.1;0.174912,MA0156.1;0.328288,MA0157.1;0.0705229,MA0158.1;0,MA0159.1;0.0760743,MA0160.1;1.24966,MA0161.1;0,MA0162.1;4.9805e-09,MA0163.1;7.02285e-10,MA0164.1;0.206244,MA0080.2;1.83878,MA0018.2;0.14446,MA0099.2;0.393608,MA0079.2;4.82164e-17,MA0102.2;0.277582,MA0258.1;0.356056,MA0259.1;0.010122,MA0442.1;0
}}

Latest revision as of 14:36, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:107880104..107880107,-p@chr10:107880104..107880107
-
Mm9::chr10:115535696..115535704,-p@chr10:115535696..115535704
-
Mm9::chr10:115624741..115624744,+p@chr10:115624741..115624744
+
Mm9::chr10:116333731..116333741,-p4@Gm239
Mm9::chr10:126604725..126604740,+p@chr10:126604725..126604740
+
Mm9::chr10:128346460..128346485,+p8@Cd63
p8@LOC100505035
Mm9::chr10:128346486..128346499,+p9@Cd63
p9@LOC100505035
Mm9::chr10:61337613..61337627,-p@chr10:61337613..61337627
-
Mm9::chr10:7581888..7581901,+p@chr10:7581888..7581901
+
Mm9::chr10:79567046..79567057,-p@chr10:79567046..79567057
-
Mm9::chr10:79567079..79567121,-p@chr10:79567079..79567121
-
Mm9::chr10:79568311..79568322,-p@chr10:79568311..79568322
-
Mm9::chr10:90545398..90545406,-p4@Apaf1
Mm9::chr11:102966085..102966105,+p4@Acbd4
Mm9::chr11:103224942..103224953,-p12@Arhgap27
Mm9::chr11:103224985..103224999,-p8@Arhgap27
Mm9::chr11:115443079..115443090,+p2@Nup85
Mm9::chr11:24219966..24219970,+p@chr11:24219966..24219970
+
Mm9::chr11:54776375..54776376,-p6@Tnip1
Mm9::chr11:59700717..59700721,+p@chr11:59700717..59700721
+
Mm9::chr11:59778438..59778453,-p1@Rasd1
Mm9::chr11:59834720..59834733,-p6@Pemt
Mm9::chr11:66768590..66768604,+p@chr11:66768590..66768604
+
Mm9::chr11:75469413..75469420,+p14@Myo1c
Mm9::chr11:83276483..83276540,-p1@Mmp28
Mm9::chr11:94622225..94622231,-p3@Gm11545
Mm9::chr11:95245976..95245996,+p4@Slc35b1
Mm9::chr11:95246260..95246271,+p3@Slc35b1
Mm9::chr12:112666837..112666863,+p@chr12:112666837..112666863
+
Mm9::chr12:112667369..112667383,+p@chr12:112667369..112667383
+
Mm9::chr12:21502374..21502380,+p@chr12:21502374..21502380
+
Mm9::chr12:40949951..40949969,-p3@Ifrd1
Mm9::chr12:4914406..4914415,-p10@Ubxn2a
Mm9::chr12:80118328..80118339,-p@chr12:80118328..80118339
-
Mm9::chr12:80764821..80764824,+p@chr12:80764821..80764824
+
Mm9::chr12:86479652..86479682,-p@chr12:86479652..86479682
-
Mm9::chr12:86479683..86479693,-p@chr12:86479683..86479693
-
Mm9::chr12:86479702..86479714,-p@chr12:86479702..86479714
-
Mm9::chr13:101323122..101323165,-p7@Ocln
Mm9::chr13:112239431..112239480,-p@chr13:112239431..112239480
-
Mm9::chr13:32937674..32937685,-p@chr13:32937674..32937685
-
Mm9::chr13:32952829..32952836,+p@chr13:32952829..32952836
+
Mm9::chr13:32952878..32952890,+p@chr13:32952878..32952890
+
Mm9::chr13:34027838..34027855,-p1@Serpinb6a
Mm9::chr13:34045071..34045084,+p@chr13:34045071..34045084
+
Mm9::chr13:34045100..34045111,+p@chr13:34045100..34045111
+
Mm9::chr13:41039740..41039753,+p@chr13:41039740..41039753
+
Mm9::chr13:52830961..52830981,-p1@BB123696
Mm9::chr13:58466554..58466556,-p@chr13:58466554..58466556
-
Mm9::chr13:62959775..62959785,-p3@Fbp2
Mm9::chr14:121693634..121693643,-p@chr14:121693634..121693643
-
Mm9::chr14:23969065..23969095,+p@chr14:23969065..23969095
+
Mm9::chr14:52604163..52604188,+p6@Arhgef40
Mm9::chr14:52604201..52604213,+p9@Arhgef40
Mm9::chr14:56247194..56247210,-p2@Ipo4
Mm9::chr15:38563187..38563194,-p@chr15:38563187..38563194
-
Mm9::chr15:38591740..38591754,+p2@Atp6v1c1
Mm9::chr15:58184398..58184415,-p@chr15:58184398..58184415
-
Mm9::chr15:74708816..74708817,-p@chr15:74708816..74708817
-
Mm9::chr15:85889176..85889223,+p1@Gramd4
Mm9::chr16:20364179..20364209,-p6@Abcc5
Mm9::chr16:20695073..20695082,+p11@Fam131a
Mm9::chr16:20803330..20803333,-p@chr16:20803330..20803333
-
Mm9::chr16:20867079..20867087,+p@chr16:20867079..20867087
+
Mm9::chr16:34081884..34081907,-p@chr16:34081884..34081907
-
Mm9::chr16:45455045..45455087,-p1@Gm17783
p1@Gm609
Mm9::chr16:96535332..96535334,+p@chr16:96535332..96535334
+
Mm9::chr17:15511590..15511601,+p5@ENSMUST00000153434
Mm9::chr17:25711365..25711370,+p@chr17:25711365..25711370
+
Mm9::chr17:25893598..25893610,+p@chr17:25893598..25893610
+
Mm9::chr17:25910714..25910723,+p2@Narfl
Mm9::chr17:32562225..32562240,-p@chr17:32562225..32562240
-
Mm9::chr17:34341529..34341538,+p3@Tap2
Mm9::chr17:37026609..37026620,-p3@Trim40
Mm9::chr17:37035264..37035284,+p2@Trim31
Mm9::chr17:37330865..37330885,+p1@Ubd
Mm9::chr17:37620488..37620504,-p1@H2-M2
Mm9::chr17:37620515..37620526,-p2@H2-M2
Mm9::chr17:41016971..41016976,-p@chr17:41016971..41016976
-
Mm9::chr17:41017293..41017307,-p@chr17:41017293..41017307
-
Mm9::chr17:49588736..49588742,+p2@Mocs1
Mm9::chr17:50439683..50439689,-p@chr17:50439683..50439689
-
Mm9::chr17:56144981..56144988,-p2@Stap2
Mm9::chr17:73681574..73681576,+p@chr17:73681574..73681576
+
Mm9::chr17:95264226..95264262,+p@chr17:95264226..95264262
+
Mm9::chr17:95264277..95264286,+p@chr17:95264277..95264286
+
Mm9::chr18:21275368..21275371,-p@chr18:21275368..21275371
-
Mm9::chr18:35886516..35886542,+p2@1700066B19Rik
Mm9::chr18:36953486..36953503,+p2@Zmat2
Mm9::chr19:11043250..11043262,-p@chr19:11043250..11043262
-
Mm9::chr19:18805919..18805930,+p@chr19:18805919..18805930
+
Mm9::chr19:4059037..4059061,-p@chr19:4059037..4059061
-
Mm9::chr19:4059077..4059099,-p@chr19:4059077..4059099
-
Mm9::chr1:127341141..127341148,+p@chr1:127341141..127341148
+
Mm9::chr1:127346940..127346945,-p@chr1:127346940..127346945
-
Mm9::chr1:16041633..16041635,+p@chr1:16041633..16041635
+
Mm9::chr1:167766612..167766636,-p@chr1:167766612..167766636
-
Mm9::chr1:174361141..174361152,+p@chr1:174361141..174361152
+
Mm9::chr1:178804530..178804541,+p@chr1:178804530..178804541
+
Mm9::chr1:179671150..179671165,+p@chr1:179671150..179671165
+
Mm9::chr1:179674769..179674774,-p@chr1:179674769..179674774
-
Mm9::chr1:183215926..183215959,+p@chr1:183215926..183215959
+
Mm9::chr1:195129567..195129580,+p8@Lamb3
Mm9::chr1:61685567..61685587,+p2@Pard3b
Mm9::chr1:83113335..83113351,+p1@Ccl20
Mm9::chr1:91000343..91000358,+p@chr1:91000343..91000358
+
Mm9::chr1:94601573..94601580,+p@chr1:94601573..94601580
+
Mm9::chr2:11414279..11414290,-p@chr2:11414279..11414290
-
Mm9::chr2:122124454..122124473,-p1@Duox2
Mm9::chr2:126759603..126759616,-p@chr2:126759603..126759616
-
Mm9::chr2:131178549..131178568,-p3@Rnf24
Mm9::chr2:13415278..13415284,-p@chr2:13415278..13415284
-
Mm9::chr2:13415287..13415297,-p@chr2:13415287..13415297
-
Mm9::chr2:13415301..13415317,-p@chr2:13415301..13415317
-
Mm9::chr2:13415322..13415332,-p@chr2:13415322..13415332
-
Mm9::chr2:155652189..155652200,-p4@Eif6
Mm9::chr2:155652201..155652217,-p2@Eif6
Mm9::chr2:155652383..155652446,-p1@Eif6
Mm9::chr2:158186303..158186346,-p@chr2:158186303..158186346
-
Mm9::chr2:25280152..25280193,+p1@Fut7
Mm9::chr2:26450453..26450465,-p@chr2:26450453..26450465
-
Mm9::chr2:28438667..28438694,-p3@Gtf3c5
Mm9::chr2:32477049..32477073,+p12@Ak1
Mm9::chr2:32627479..32627494,-p@chr2:32627479..32627494
-
Mm9::chr2:32631328..32631349,+p1@Ptrh1
Mm9::chr2:32631361..32631371,+p3@Ptrh1
Mm9::chr2:38469194..38469205,-p@chr2:38469194..38469205
-
Mm9::chr2:38469215..38469226,-p@chr2:38469215..38469226
-
Mm9::chr2:38469229..38469240,-p@chr2:38469229..38469240
-
Mm9::chr2:38469247..38469270,-p@chr2:38469247..38469270
-
Mm9::chr2:38469278..38469287,-p@chr2:38469278..38469287
-
Mm9::chr3:131153617..131153630,-p@chr3:131153617..131153630
-
Mm9::chr3:132292886..132292899,+p@chr3:132292886..132292899
+
Mm9::chr3:132292908..132292927,+p@chr3:132292908..132292927
+
Mm9::chr3:3556493..3556503,+p@chr3:3556493..3556503
+
Mm9::chr3:36374526..36374597,-p1@Anxa5
Mm9::chr3:7612702..7612705,+p1@ENSMUST00000156286
p1@uc008ool.1
Mm9::chr3:88755012..88755037,-p8@Dap3
Mm9::chr3:89041849..89041862,-p@chr3:89041849..89041862
-
Mm9::chr4:104940057..104940067,+p@chr4:104940057..104940067
+
Mm9::chr4:104940113..104940131,+p@chr4:104940113..104940131
+
Mm9::chr4:114914645..114914653,+p1@Cyp4a29-ps
Mm9::chr4:119330693..119330713,-p@chr4:119330693..119330713
-
Mm9::chr4:119330719..119330733,-p@chr4:119330719..119330733
-
Mm9::chr4:122673187..122673201,+p2@Mycl1
Mm9::chr4:123465086..123465098,+p2@Rhbdl2
Mm9::chr4:133899438..133899450,+p8@Slc30a2
Mm9::chr4:133899513..133899523,+p11@Slc30a2
Mm9::chr4:142835790..142835793,-p@chr4:142835790..142835793
-
Mm9::chr4:151574105..151574148,+p10@Acot7
Mm9::chr4:33335458..33335464,-p2@Pnrc1
Mm9::chr4:33335698..33335727,-p11@Pnrc1
Mm9::chr4:49610274..49610288,-p7@2810432L12Rik
Mm9::chr4:62163267..62163294,-p2@Hdhd3
Mm9::chr4:6421389..6421416,-p@chr4:6421389..6421416
-
Mm9::chr5:110759775..110759786,+p3@Pole
Mm9::chr5:118619594..118619598,-p@chr5:118619594..118619598
-
Mm9::chr5:129602530..129602546,+p2@Gpr133
Mm9::chr5:129602591..129602601,+p4@Gpr133
Mm9::chr5:129602615..129602646,+p1@Gpr133
Mm9::chr5:129602655..129602675,+p3@Gpr133
Mm9::chr5:129710202..129710207,+p@chr5:129710202..129710207
+
Mm9::chr5:20981015..20981019,+p@chr5:20981015..20981019
+
Mm9::chr5:23377178..23377183,-p@chr5:23377178..23377183
-
Mm9::chr5:32263943..32263958,-p@chr5:32263943..32263958
-
Mm9::chr5:32301242..32301266,-p@chr5:32301242..32301266
-
Mm9::chr5:8660605..8660623,+p@chr5:8660605..8660623
+
Mm9::chr5:91068698..91068709,-p@chr5:91068698..91068709
-
Mm9::chr5:91083450..91083463,-p@chr5:91083450..91083463
-
Mm9::chr5:92792309..92792321,-p1@Cxcl11
Mm9::chr6:125287812..125287831,+p@chr6:125287812..125287831
+
Mm9::chr6:147996625..147996638,-p@chr6:147996625..147996638
-
Mm9::chr6:3437371..3437419,-p@chr6:3437371..3437419
-
Mm9::chr6:3437479..3437484,-p@chr6:3437479..3437484
-
Mm9::chr6:48790719..48790730,-p12@Tmem176b
Mm9::chr6:48822835..48822859,+p@chr6:48822835..48822859
+
Mm9::chr6:48822870..48822884,+p@chr6:48822870..48822884
+
Mm9::chr6:48822942..48822953,+p@chr6:48822942..48822953
+
Mm9::chr6:50334471..50334493,-p@chr6:50334471..50334493
-
Mm9::chr6:73198571..73198582,+p3@Suclg1
Mm9::chr6:82998517..82998522,+p2@Loxl3
Mm9::chr6:83085886..83085897,+p11@Rtkn
Mm9::chr7:106530807..106530823,-p@chr7:106530807..106530823
-
Mm9::chr7:106530830..106530850,-p@chr7:106530830..106530850
-
Mm9::chr7:120406547..120406552,-p@chr7:120406547..120406552
-
Mm9::chr7:121324889..121324921,+p@chr7:121324889..121324921
+
Mm9::chr7:138180820..138180825,+p@chr7:138180820..138180825
+
Mm9::chr7:18989385..18989390,-p@chr7:18989385..18989390
-
Mm9::chr7:19110105..19110113,-p@chr7:19110105..19110113
-
Mm9::chr7:19152723..19152744,-p4@Psg27
Mm9::chr7:19152867..19152872,-p5@Psg27
Mm9::chr7:26237108..26237137,+p@chr7:26237108..26237137
+
Mm9::chr7:30290466..30290492,-p4@Sipa1l3
Mm9::chr7:31758648..31758666,-p7@Lsr
Mm9::chr7:38968204..38968218,+p5@1600014C10Rik
Mm9::chr7:38968769..38968776,+p10@1600014C10Rik
Mm9::chr7:38968895..38968904,+p6@1600014C10Rik
Mm9::chr7:38971273..38971281,+p@chr7:38971273..38971281
+
Mm9::chr7:51787434..51787448,-p1@Spib
Mm9::chr7:51789056..51789061,+p@chr7:51789056..51789061
+
Mm9::chr7:52091656..52091664,+p3@Il4i1
p3@Nup62-il4i1
Mm9::chr7:6120193..6120204,-p@chr7:6120193..6120204
-
Mm9::chr8:112485811..112485833,-p3@Marveld3
Mm9::chr8:124945700..124945703,+p1@Il17c
Mm9::chr8:12573205..12573262,-p@chr8:12573205..12573262
-
Mm9::chr8:12573279..12573290,-p@chr8:12573279..12573290
-
Mm9::chr8:12573311..12573336,-p1@uc009kwb.1
Mm9::chr8:13351651..13351657,+p@chr8:13351651..13351657
+
Mm9::chr8:13351743..13351770,+p@chr8:13351743..13351770
+
Mm9::chr8:22466694..22466699,-p1@Defa-rs1
Mm9::chr8:22814114..22814121,-p1@AY761184
Mm9::chr8:80471736..80471741,-p@chr8:80471736..80471741
-
Mm9::chr9:104230353..104230354,-p@chr9:104230353..104230354
-
Mm9::chr9:107955485..107955496,+p1@Amigo3
Mm9::chr9:108997020..108997029,+p@chr9:108997020..108997029
+
Mm9::chr9:21961347..21961358,+p3@Pigyl
Mm9::chr9:40128452..40128473,-p@chr9:40128452..40128473
-
Mm9::chr9:45550656..45550668,+p@chr9:45550656..45550668
+
Mm9::chr9:46045486..46045491,-p@chr9:46045486..46045491
-
Mm9::chr9:5332819..5332833,+p@chr9:5332819..5332833
+
Mm9::chr9:55259058..55259085,-p@chr9:55259058..55259085
-
Mm9::chr9:55278072..55278084,+p@chr9:55278072..55278084
+
Mm9::chr9:56730814..56730824,-p@chr9:56730814..56730824
-
Mm9::chr9:61283562..61283566,+p@chr9:61283562..61283566
+
Mm9::chr9:65270756..65270768,-p5@Ostb
Mm9::chr9:65270790..65270801,-p7@Ostb
Mm9::chr9:65270818..65270829,-p8@Ostb
Mm9::chr9:65270899..65270912,-p4@Ostb
Mm9::chr9:65271051..65271063,-p10@Ostb
Mm9::chr9:65992829..65992835,+p@chr9:65992829..65992835
+
Mm9::chr9:71439292..71439305,+p@chr9:71439292..71439305
+
Mm9::chrX:166435044..166435053,-p@chrX:166435044..166435053
-
Mm9::chrX:93650951..93650975,+p5@Heph


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.15.83291e-07
MA0004.10.0676594
MA0006.10.00570116
MA0007.10.197355
MA0009.11.18524
MA0014.11.20959e-06
MA0017.12.41854
MA0019.10.182254
MA0024.10.478369
MA0025.10.368652
MA0027.11.07171
MA0028.10.000858261
MA0029.10.13643
MA0030.10.143455
MA0031.10.0133632
MA0038.10.540731
MA0040.10.233561
MA0041.10.301597
MA0042.10.535297
MA0043.10.615704
MA0046.12.66209
MA0048.10.0543062
MA0050.10.817096
MA0051.10.974943
MA0052.10.664674
MA0055.10.0151824
MA0056.10
MA0057.10.00437291
MA0058.10.0155642
MA0059.10.00229396
MA0060.10.00121989
MA0061.122.6476
MA0063.10
MA0066.11.86407
MA0067.10.0756081
MA0068.10.240055
MA0069.10.245785
MA0070.10.407346
MA0071.13.17216
MA0072.10.219764
MA0073.10
MA0074.10.100425
MA0076.15.40159e-05
MA0077.10.798272
MA0078.10.949909
MA0081.10.478625
MA0083.10.07295
MA0084.10.242854
MA0087.10.295282
MA0088.10.100148
MA0089.10
MA0090.12.03999
MA0091.10.0839239
MA0092.11.56228
MA0093.10.0193188
MA0095.10
MA0098.10
MA0100.10.143353
MA0101.118.1026
MA0103.11.71471
MA0105.14.86554
MA0106.12.51443
MA0107.125.5607
MA0108.23.98134
MA0109.10
MA0111.10.124073
MA0113.10.131742
MA0114.15.07178
MA0115.11.29049
MA0116.10.195249
MA0117.10.539401
MA0119.10.937188
MA0122.11.6332
MA0124.10.801574
MA0125.10.344348
MA0130.10
MA0131.10.0433191
MA0132.10
MA0133.10
MA0135.10.0211899
MA0136.10.759301
MA0139.10.000783549
MA0140.11.16918
MA0141.12.03861
MA0142.10.707846
MA0143.10.530621
MA0144.13.24253
MA0145.10.0224822
MA0146.10.00479742
MA0147.10.0384915
MA0148.10.139403
MA0149.10.00358492
MA0062.20.00458007
MA0035.21.99745
MA0039.20.00592618
MA0138.20.163095
MA0002.20.0229665
MA0137.21.55895
MA0104.20.0178928
MA0047.20.389102
MA0112.20.312843
MA0065.20.697374
MA0150.12.05217
MA0151.10
MA0152.10.537926
MA0153.11.98516
MA0154.11.20754
MA0155.10.174912
MA0156.10.328288
MA0157.10.0705229
MA0158.10
MA0159.10.0760743
MA0160.11.24966
MA0161.10
MA0162.14.9805e-09
MA0163.17.02285e-10
MA0164.10.206244
MA0080.21.83878
MA0018.20.14446
MA0099.20.393608
MA0079.24.82164e-17
MA0102.20.277582
MA0258.10.356056
MA0259.10.010122
MA0442.10
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