FFCP PHASE1:Hg19::chr6:41604725..41604741,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=4188 | |EntrezGene=4188 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=6967 | |HGNC=6967 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=B1AKB7 | |UniProt=B1AKB7 | ||
|association_with_transcript=-28bp_to_ENST00000419164_5end | |association_with_transcript=-28bp_to_ENST00000419164_5end | ||
|cluster_id=chr6:41604725..41604741,+ | |||
|coexpression_cluster_id=C511 | |coexpression_cluster_id=C511 | ||
|description=CAGE_peak_4_at_MDFI_5end | |description=CAGE_peak_4_at_MDFI_5end |
Latest revision as of 18:45, 18 September 2015
Short description: | p4@MDFI |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MDFI_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | -28bp_to_ENST00000419164_5end |
EntrezGene: | MDFI |
HGNC: | 6967 |
UniProt: | B1AKB7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p4@MDFI |
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0
5
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.17e-28 | 253 |
endo-epithelial cell | 1.99e-27 | 42 |
respiratory epithelial cell | 9.68e-22 | 13 |
endodermal cell | 1.20e-19 | 58 |
general ecto-epithelial cell | 2.34e-16 | 14 |
extraembryonic cell | 1.66e-15 | 19 |
epithelial cell of tracheobronchial tree | 7.16e-14 | 9 |
epithelial cell of lower respiratory tract | 7.16e-14 | 9 |
epithelial cell of alimentary canal | 4.08e-12 | 20 |
transitional epithelial cell | 6.96e-11 | 4 |
Showing 1 to 10 of 32 entries
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.61e-22 | 14 |
membranous layer | 4.61e-22 | 14 |
chorion | 7.37e-14 | 7 |
extraembryonic structure | 1.07e-11 | 24 |
endoderm-derived structure | 4.03e-11 | 160 |
endoderm | 4.03e-11 | 160 |
presumptive endoderm | 4.03e-11 | 160 |
amnion | 4.95e-10 | 7 |
organ component layer | 3.77e-09 | 66 |
lower respiratory tract epithelium | 3.82e-09 | 3 |
Showing 1 to 10 of 22 entries
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.05e-11 | 14 |
Showing 1 to 1 of 1 entries