FFCP PHASE1:Hg19::chr11:2153817..2153828,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-94bp_to_BC075845_5end | |||
|cluster_id=chr11:2153817..2153828,+ | |||
|coexpression_cluster_id=C172 | |||
|description=CAGE_peak_3_at_BC075845_5end | |||
|id=chr11:2153817..2153828,+ | |||
|ontology_enrichment_celltype=CL:0000349!7.05e-07!3;CL:0002577!7.05e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;7.22e-37;19!CL:0002577;4.40e-16;3!CL:0000669;3.50e-12;4!CL:0002575;1.38e-11;2!CL:0002536;2.57e-11;2!CL:0000182;4.36e-10;12!CL:0002537;6.24e-10;5!CL:0002541;3.29e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,4.95e-37,19;CL:0002577,3.78e-16,3;CL:0000669,5.22e-12,4;CL:0002575,1.45e-11,2;CL:0002536,1.99e-11,2;CL:0000182,3.30e-10,12;CL:0002537,6.16e-10,5;CL:0002541,3.41e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.00e-11;11!UBERON:0009497;1.77e-09;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.74e-18!14;UBERON:0000158!3.74e-18!14;UBERON:0000478!2.80e-17!24;UBERON:0003124!4.98e-13!7;UBERON:0004923!5.22e-09!57;UBERON:0001987!2.09e-08!4;UBERON:0004340!2.09e-08!4;UBERON:0000305!2.99e-07!7;UBERON:0005256!4.32e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;9.59e-34;24!UBERON:0005631;7.16e-25;10!UBERON:0000158;7.16e-25;10!UBERON:0000305;2.33e-18;7!UBERON:0001987;3.43e-12;4!UBERON:0002107;6.28e-09;19!UBERON:0006925;6.28e-09;19!UBERON:0003124;3.29e-08;3!UBERON:0000920;3.29e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.72e-35,14;UBERON:0000158,1.72e-35,14;UBERON:0000478,7.35e-34,24;UBERON:0003124,1.07e-18,7;UBERON:0000305,1.92e-18,7;UBERON:0004871,4.13e-16,8;UBERON:0001987,3.07e-12,4;UBERON:0004340,3.07e-12,4;UBERON:0002107,5.11e-09,19;UBERON:0006925,5.11e-09,19;UBERON:0008836,5.11e-09,19;UBERON:0004923,9.09e-09,66;UBERON:0000920,3.41e-08,3;UBERON:0008835,1.05e-07,22;UBERON:0003894,1.05e-07,22;UBERON:0009854,2.40e-07,23 | |||
|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,2.62129646556207,2.90143676051299,0.123766352960047,0.662794751455832,0,0,0,0,0,0.408001382488506,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72852777344,0,0,0,0,0,0,0,0,0,0,0,0.741800787835671,0,0,0.336672227908132,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,2.3218396401599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0.590789906681404,0,1.10689594688802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0.57191197463259,5.42621605391443,0.823240336780769,0,0,1.58390374586686,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,0.500170521059677,0.542530047399471,1.03985430765404,0.892144943985809,0.630809660135739,0.468565659970853,0,0,0,0,0,0,2.34961388955289,6.86286847621712,0,0,0,1.5156378572313,4.99306318531491,3.62868351995616,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,1.69203229428271,0,0,0.114814448164607,0,0.262248829918848,0,0.0770153371044148,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0.15350367472613,0.413509717453592,0.107420244868274,0,0.0852266274161009,1.60257664164127,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0.190630193923825,0,0.42793898803392,0,0,0.359744915166629,0,0.235624804691373,0,0,0,0,0,0,0.545999645631943,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.294747123039363,0,0,0,0,0,0.349934720244983,0,0,0,0.376575203107117,0,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,3.10367830158997,1.48482340416319,9.21482106297696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0.23056390438806,0,0,5.10401855571071,0.0915975934018623,19.1892519366708,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0,2.40773294189637,0,0,0,0,0,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12990370390266,0,0,0,0,0,0,1.79828648623917,0,0,7.03539491234055,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0.858452096273142,0,0.470284307407084,0,0,1.89079637537337,1.483485450861,1.68508859635462,2.36225955635397,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,5.30027555648885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2249819094128,0.0642292250964595,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,1.21700790611806,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,4.6392577253528,0,0,1.39265542612958,0,0,0,0,0,0.874238242015829,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,3.80903090341985,0,0.0620747142958579,0,0,0.404234377916439,0.435433495793923,15.7427318499229,0.0673520530145875,0,0.99798106963804,0.0814032686109745,0,0,1.07790242527904,2.34640942403454,0,0.406896178315738,0,0,0 | |||
|short_description=p3@BC075845 | |||
}} |
Latest revision as of 21:01, 23 July 2015
Short description: | p3@BC075845 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BC075845_5end |
Coexpression cluster: | C172_chorionic_skeletal_tongue_amniotic_liver_gastrointestinal_Pericytes |
Association with transcript: | -94bp_to_BC075845_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 4.95e-37 | 19 |
placental epithelial cell | 3.78e-16 | 3 |
pericyte cell | 5.22e-12 | 4 |
central nervous system pericyte | 1.45e-11 | 2 |
amniotic epithelial cell | 1.99e-11 | 2 |
hepatocyte | 3.30e-10 | 12 |
amnion mesenchymal stem cell | 6.16e-10 | 5 |
chorionic membrane mesenchymal stem cell | 3.41e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.72e-35 | 14 |
membranous layer | 1.72e-35 | 14 |
extraembryonic structure | 7.35e-34 | 24 |
chorion | 1.07e-18 | 7 |
amnion | 1.92e-18 | 7 |
somatic layer of lateral plate mesoderm | 4.13e-16 | 8 |
placenta | 3.07e-12 | 4 |
allantois | 3.07e-12 | 4 |
liver | 5.11e-09 | 19 |
digestive gland | 5.11e-09 | 19 |
liver bud | 5.11e-09 | 19 |
organ component layer | 9.09e-09 | 66 |
egg chorion | 3.41e-08 | 3 |
hepatic diverticulum | 1.05e-07 | 22 |
liver primordium | 1.05e-07 | 22 |
digestive tract diverticulum | 2.40e-07 | 23 |