FFCP PHASE1:Hg19::chr11:5617858..5617934,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=117854,445372 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16277,33440 | |||
|TSSclassifier=strong | |||
|UniProt=Q9C030,B4DDQ5,B2RNG4 | |||
|association_with_transcript=0bp_to_ENST00000380097,ENST00000511284,NM_001003818,NM_001003819,NM_001198644,NM_001198645,uc001mbd.2,uc001mbe.2,uc001mbf.2,uc010qzk.1,uc010qzl.1_5end | |||
|cluster_id=chr11:5617858..5617934,+ | |||
|description=CAGE_peak_1_at_TRIM6-TRIM34_5end,CAGE_peak_1_at_TRIM6_5end | |||
|id=chr11:5617858..5617934,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.11e-15!180;CL:0002321!1.67e-10!248;CL:0000220!2.12e-10!246;CL:0000057!3.14e-08!75;CL:0000222!2.02e-07!119;CL:0000187!2.60e-07!54;CL:0000680!3.23e-07!57;CL:0000056!3.23e-07!57;CL:0000355!3.23e-07!57;CL:0000393!4.02e-07!60;CL:0000211!4.02e-07!60;CL:0000144!8.88e-07!625 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.54e-10,250;CL:0000187,7.45e-08,55;CL:0000393,1.66e-07,61;CL:0000211,1.66e-07,61;CL:0000680,3.36e-07,58;CL:0000056,3.36e-07,58;CL:0000355,3.36e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!2.71e-11!95;UBERON:0000475!6.40e-10!365;UBERON:0002100!5.63e-09!216;UBERON:0005256!8.25e-09!143;UBERON:0000914!1.13e-08!83;UBERON:0002329!1.13e-08!83;UBERON:0003077!1.13e-08!83;UBERON:0003059!1.13e-08!83;UBERON:0007282!1.13e-08!83;UBERON:0009618!1.13e-08!83;UBERON:0007285!1.13e-08!83;UBERON:0000486!2.15e-08!82;UBERON:0004290!2.65e-07!70 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,7.71e-12,99;UBERON:0000486,4.18e-08,83;UBERON:0002100,4.29e-08,199;UBERON:0005256,3.63e-07,122;UBERON:0003104,3.77e-07,160;UBERON:0009142,3.77e-07,160;UBERON:0002329,4.82e-07,71;UBERON:0003059,4.82e-07,71;UBERON:0007282,4.82e-07,71;UBERON:0004290,4.82e-07,71;UBERON:0009618,4.82e-07,71;UBERON:0003077,9.26e-07,72;UBERON:0007285,9.26e-07,72 | |||
|phase1_expression=1.2717486548939,1.2846031433459,1.12763523276777,0,1.34088328328186,0,2.53299878168311,1.26343974685366,0.261185628199839,4.17747692052565,2.79120467188971,3.71350332621293,3.69273769519835,1.48519623552056,0.994192127183747,2.01697543935533,2.41077811209591,2.92124036154949,2.43966399395253,2.33930010345897,1.63200552995402,0.313454721478088,2.0036519099174,3.42186062682211,1.12988375635323,0.458480434487708,0.328402357799783,0.157421562627358,0,0,0,1.83884244895785,2.10844143144775,1.47901604066715,0,0,1.46800219667424,0,0,0.217010870715852,0.223915474239924,1.29557466407592,1.54545340580512,0.145398238779565,0,0,0.232429036905685,0,0,0.863077176966451,0.256160706529101,0.47296445977717,0.344745680736619,0,0,0,0,0,0,0,0,0.659702600373432,0.598390972864896,0.426224750532694,0.290209238628584,0,0,0.251248665256743,0,0.434377689410233,0,0,0,0,0,0,0,0.300353785683013,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0.587237189370939,0,0,1.68152568894461,0.790152254325231,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,1.53435074212236,2.89151321907653,2.50668955317945,1.88300474649071,7.15757352345989,0.973269740605272,4.34860158954712,4.43458794925128,3.07421749925941,5.76307932189936,1.45718115317017,1.48313777113772,0,0.174129737299267,0.132957960518865,0.238490624305342,0.571994910780128,0,0.198762407366705,0,0.694281003215189,0,0,0.275118041940067,1.25396979922086,0.258416759169329,2.49036383880697,0.33472061276467,2.81980521976403,0.760272105718513,0.732186172644509,1.47065232138347,0,1.16089646769304,1.12264686313085,2.0270066486998,0,0,0.183201743930407,0,0,1.3082821564276,1.98788780678127,4.68532893158945,3.04541115870403,0.860509862246441,1.41867352879343,0.560677600142307,3.20246987189115,2.22000793575444,0.622422070799533,0.67355336034844,0.490385709340376,0.454072282934794,0.576175924479999,0.937285727335186,1.24864030732128,0.570471821544449,0.896692083310806,1.05691048779388,1.29498355494505,1.26405726032024,0.816616685019573,1.47401180774122,0.723280468230358,1.18800285728205,1.7308685049499,0.910161361938026,1.43723628363248,2.52504170931099,0.625592599359821,0.554128230968366,3.95079858792754,1.5324389789951,1.65261864797256,3.06266894532057,3.58779271377724,1.70845911054854,0.635795703478686,3.90118424909723,2.16410311400722,2.83404594050192,1.11670113798954,2.53164498361899,1.75386609290158,2.52433774244115,1.93304787148829,3.87950536365149,1.42003837006646,2.92181084860157,3.56077243852024,2.89891279744945,1.90922284413584,2.86804595389004,1.46368447355514,0.662648841607426,1.16193942869518,2.28054321033815,2.01856680700503,0.72995471815166,3.12899064659632,2.57296375277154,2.76269842704961,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.2347220339942,0,0,0,0,0,0.614942192715568,3.60292401626904,3.62175941848464,1.1240175325762,1.40740561376283,2.40729957412177,1.3032332212413,0,7.21656710126366,0.811512834825538,3.05262605013136,0.577465791044295,0.462985512576611,0.190254152234598,0,0,0.246217006087397,0.468008530278475,0.297262324577456,1.87467667973554,5.37542810236351,3.40260233381728,2.32852159027406,1.74380363108377,0.766765358330422,0.985326475791887,0.264145302039678,0,0.432359860250884,0.25248486685276,1.65094525159639,0,1.17217447210047,0,1.33675740514321,1.20137223137567,2.28661146104463,0.897048674762886,2.61576041299968,0.5867062865676,2.32689088364,0,0.845302752556,3.19125739901845,4.16029747645464,0.771622122786426,0,0.266422179016099,1.14382394926518,0,1.64648067356154,0.977208552881205,1.42156779497018,0,10.8518175741451,3.48613383440118,13.2964078272136,0,0.502257091432126,0,3.83399768786532,0,1.42636905040718,1.15825045334063,0.61642896765115,0.895304816199478,0,0,0,0,0.254094624222463,1.30139853857622,0,0.167516265334349,0.637938751653163,1.49801404789436,0,0.414415513436035,1.8403723757871,1.00034104211935,1.08506009479894,0.831883446123229,0.356857977594324,1.26161932027148,1.7571212248907,1.20378439891088,0,0,2.65690239414175,1.65932251687533,3.0409265063829,0.979005787313703,0,0,0,0,0.303127571446259,0,0.30239029332968,1.24053903909388,1.84154367945675,0.841980283299221,2.94720043288112,1.02341449813341,1.93024705372329,0,4.31787142647436,1.9531789784444,5.58464660893902,3.63478100428535,3.02146983995894,0.241718899183244,3.40860999515584,1.47329582297434,5.51109351190112,2.73136752010076,2.36023946926963,0.902399225814824,3.69673618101191,1.56869953835371,1.46139224653261,2.63879072232189,0,0.340187410553031,1.94324324491925,0,0.812839312631559,1.00337954770971,3.82314409567557,0,0.895499018888713,0,0,4.35965212697862,1.96808787419823,0.976135183992909,0.721287081534056,0.0915694648183434,0.082509499920588,2.29706215198469,2.60024098414608,4.82051789532479,1.64340221096607,1.3864375540318,2.14905144616581,2.61889487720608,4.40423003959922,4.20548412351263,2.38634556765083,2.04773681987496,5.2891172915513,1.72971060628596,4.08360679982669,1.4162089319777,0,0.31481234683064,2.7881490806424,1.54016790088044,3.19383618190213,1.73986598415015,1.29726953372744,1.28812398067792,1.116475108079,3.16379424718726,2.85945290885737,0,0,0.636406495851874,1.56989728039846,3.41757669408298,1.37268514868027,1.7671860351853,2.22400729730648,0,1.26377536871694,3.90106991271672,1.21856744815642,0,1.63799893689583,3.25232493493539,1.13008116620243,0.551365343546124,1.99031692572366,3.5076070820301,0,0.655894752046633,0.811641507850816,3.40805847909725,2.25356482025793,9.89538330207955,3.34046739444612,1.426684205925,2.83808851256478,2.74439925886963,0.987884678879706,1.13841952129715,0.349934720244983,1.25088746543166,3.35151137767894,1.08890984861323,0.564862804660675,3.44404298136984,0,1.33029046061003,3.21612760289743,0,0.764637207142375,0,0.476463550915578,1.64544909234478,0,0.540031437238115,0,0,0,1.96032172784825,0,0.144269212976445,0,0,1.39705560002972,0,0,1.94773164164733,1.68478306868075,0,0.313359791546046,7.51903431270201,0,0,0.403599414382095,0.851692475380653,2.40453741329035,0,0,0,0,0,0,1.35227839237992,3.66379164797602,0,0,1.17206543417515,0,0,0,0.47748896947538,1.18785872333055,0.307160702099232,0,0.140669416410513,1.55832187032068,0.16480387422676,1.05562704063997,0.398495976502139,0.552567831062295,0,3.27259784006895,0.984678443688556,4.66559381492711,4.94275931310298,0.716084698702437,0.511572370226872,1.28236427328014,0,3.33410970433911,0,0.185536196323703,0,0,0,1.44999915086959,2.50345586228099,1.01701460117107,0.236387681767936,0,0,0,0,0.241192877250816,0,0,0,0,0.10893846351899,4.87983104975112,1.76985594558733,0.113942055847001,0.69169171316418,8.79624915215767,4.0199527611143,2.55200927785536,4.03029410968194,3.73124343213044,0,0.156980256395025,1.32969345520125,0.225595660617181,0.19606253431774,0.167821586975843,0.569261198172555,0.317873157960757,0.632994193584081,2.93819054686466,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.269604531922708,1.60515529459758,0,0,5.86993856796269,0,1.18375320854817,3.62972148145992,0.30607276163049,2.27471686662557,1.35291077473043,0.622129148383483,2.65861549082874,0.661983911750998,0.313932918407225,2.38944859545918,0.284609546029793,8.32048038078832,0.173559738335131,4.01768829398948,10.5341639962287,1.7472666824203,9.63121781841053,0,0,0,2.23074737923365,0,1.12990370390266,1.91858694505451,0.794858446811959,0.253243183823515,1.95551382734803,9.53889960993251,0.640358984218058,1.59847687665704,0,0,0,0.576219191952599,0.49701014226173,2.82832841540154,0.271808412147228,0.209205692624666,0.407992870545287,1.15580235960608,0,0.410716136675979,5.10986352267889,3.86788897277961,0,0.558564802544508,1.14580212005842,0,1.79711100449092,0.429226048136571,0.223171457441873,0.739018197353989,1.08089965062721,0,0,0,0,0.492137407573744,0,0,0.272406812223151,2.08979093004525,1.51293380256957,2.49264202817511,0,0.77380195455795,0.0607495566580247,0,7.40773648612463,2.04572893726493,0.528001682597033,2.15144807199414,1.91915197319445,2.1440859791201,0,0,2.17199840701485,1.72844298240254,4.24563568142232,3.59190574687462,2.54486814322951,0.681552087141687,2.60617810496289,0.439656701034247,0,0,0,4.61934462287689,0.704815022316672,1.28144895081234,1.57204305099666,0.414239055347196,0,0,0.121792598380896,6.38341257770182,2.72008901684737,6.7686271386129,3.36980134439808,3.60659893780785,0,0.886068179966986,0.122026264901963,0,1.14681839138014,0,0.620964029413834,0,1.24980407962107,1.06154382279153,1.42732666772484,1.6468607378872,0,0,4.0298796779456,3.97312626740282,1.66441758450784,1.51522404220071,3.0188148210309,1.77962244319307,0.457680136793847,1.51230923763239,1.5543720058278,1.03498604992744,2.70804504178294,0.899606224327209,1.86315548251511,5.80588690977198,1.32920857278997,1.04349012362347,4.95850109690821,4.18885733385675,8.54428539729789,1.27294061441792,2.14821114084977,2.32016879939247,0.796191777397232,0,5.83772698810748,2.69399591012735,0,3.46715694733146,2.57329909649911,0.521988583930423,9.74835479702771,7.64024165268652,0.97894681802587,0.179088841081487,0.926404341482917,4.60496504115285,8.12770071351053,3.27953865060555,2.87202149110224,0,0.690860683462397,1.82315973706429,0.138258436151731,0,0,0,0.327609848846413,0.983091635014877,0,0,1.49368421571797,0,1.13503190713367,3.49801305478497,0.279759015438889,1.24415452006595,0,0,0,0,0,1.06287460050841,0,0,1.59002175326709,0.157723490002507,0,0.352675943690684,2.7562092961788,0.513833800771676,0,0,0,0,0.138314504928436,0.161475645631851,0,19.9239868557082,0.589848616738702,18.1594312536462,1.96393632455575,1.90691047733584,0,0,1.88025820873143,2.21875575573872,0.781514011233092,0.523813388962845,0,2.66140955190681,0.0675375846183947,0,0,0.126831620387814,0,3.83780436800028,0.496211178389294,0,4.98273467794422,0.535701835878287,0.336283722218824,0,0.91064876540519,1.5966426629275,0,1.20041606606193,0.0679697329768317,0.0657727735628491,7.09163045303809,3.78186766433035,1.96232732126285,0,0,1.82631744101899,10.7963795609311,9.555033757741,2.43020250200632,0,0,0.695433089210318,0.801711364730253,0.414432328326074,0,0,9.89522925286638,2.83996801753357,2.98246916657052,0.846774100381858,0,0.62041277132864,0.955538938977433,0,0,0,0,0.410651227424988,0,0.485710993059139,0,0,0,0,0,0,0.926089897295336,0.655678681511872,0,1.22574160876953,0,0.392616934229891,0.297046400327086,0.4226557275834,1.69927114687817,0.563903507879121,0.386747327841463,0,8.21348117586025,0.352894871715692,0.481448200135009,0,3.66983426723633,0.143339583151451,0,0.0679914901909147,0,1.0580536810308,0.743990036333503,2.31087814315709,2.16313281061895,0.126166424835079,0.327796715891087,0.253397002022874,1.01988829741982,0,0.643264296743914,1.50424523575425,4.09204970378493,7.502995644373,0,0.20686599172379,0.426467963801962,0.714193294391221,0.322944549180031,0.558672428662721,0.33639558774184,1.97306190662311,1.21270313374932,0,0.342233301085281,1.68380132536469,1.29099969706817,0.99798106963804,2.44209805832924,0.533636729388577,0,0.808426818959282,0,1.833621662743,1.62758471326295,0,0.201273793591026,0.961705476909699 | |||
|short_description=p1@TRIM6-TRIM34,p1@TRIM6 | |||
}} |
Latest revision as of 08:14, 18 September 2015
Short description: | p1@TRIM6-TRIM34, p1@TRIM6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM6-TRIM34_5end, CAGE_peak_1_at_TRIM6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000380097, ENST00000511284, NM_001003818, NM_001003819, NM_001198644, NM_001198645, uc001mbd.2, uc001mbe.2, uc001mbf.2, uc010qzk.1, uc010qzl.1_5end |
EntrezGene: | 117854,445372 |
HGNC: | 33440&submit=Submit 16277, 33440 |
UniProt: | Q9C030B4DDQ5B2RNG4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.54e-10 | 250 |
muscle cell | 7.45e-08 | 55 |
electrically responsive cell | 1.66e-07 | 61 |
electrically active cell | 1.66e-07 | 61 |
muscle precursor cell | 3.36e-07 | 58 |
myoblast | 3.36e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.36e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
surface structure | 7.71e-12 | 99 |
multilaminar epithelium | 4.18e-08 | 83 |
trunk | 4.29e-08 | 199 |
trunk mesenchyme | 3.63e-07 | 122 |
mesenchyme | 3.77e-07 | 160 |
entire embryonic mesenchyme | 3.77e-07 | 160 |
somite | 4.82e-07 | 71 |
presomitic mesoderm | 4.82e-07 | 71 |
presumptive segmental plate | 4.82e-07 | 71 |
dermomyotome | 4.82e-07 | 71 |
trunk paraxial mesoderm | 4.82e-07 | 71 |
paraxial mesoderm | 9.26e-07 | 72 |
presumptive paraxial mesoderm | 9.26e-07 | 72 |