FFCP PHASE1:Hg19::chr17:72940334..72940358,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:72940334..72940358,+ | |||
|description=CAGE_peak_at_chr17:72940334..72940358,+ | |||
|id=chr17:72940334..72940358,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.90e-22!254;CL:0002328!4.88e-18!3;CL:0002076!1.47e-16!43;CL:0000223!1.68e-13!59;CL:0002251!3.07e-12!21;CL:0002368!6.46e-11!13;CL:0000076!7.83e-11!62;CL:0002202!1.54e-10!9;CL:0002632!1.54e-10!9;CL:0000240!1.11e-08!6;CL:0000311!1.11e-08!6;CL:0000079!1.11e-08!6;CL:0000237!1.11e-08!6;CL:0000036!1.11e-08!6;CL:0000357!1.11e-08!6;CL:0000114!1.11e-08!6;CL:0002178!5.42e-08!3;CL:1001319!4.78e-07!1;CL:1000600!4.78e-07!1;CL:0002336!5.06e-07!1;CL:0002261!5.06e-07!1;CL:0002170!5.06e-07!1;CL:0000313!5.37e-07!1;CL:0002327!8.04e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002202;1.02e-10;9!CL:0002632;1.02e-10;9!CL:0002328;1.26e-08;3!CL:0000307;1.26e-08;3!CL:0002368;1.05e-07;13!CL:0000076;2.64e-07;63!CL:0002327;6.87e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,1.02e-10,9;CL:0002632,1.02e-10,9;CL:0000076,6.11e-09,63;CL:0002076,9.42e-09,42;CL:0002328,1.12e-08,3;CL:0000068,1.40e-08,3;CL:0000069,1.40e-08,3;CL:0000307,1.40e-08,3;CL:0000377,1.40e-08,3;CL:0002368,1.05e-07,13;CL:0002327,6.87e-07,4;CL:0000066,8.89e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.85e-12;2!UBERON:0010056;1.85e-12;2!CL:0000377;1.26e-08;3 | |||
|ontology_enrichment_disease=DOID:1749!4.29e-32!14;DOID:305!5.98e-23!106;DOID:0050687!9.68e-16!143;DOID:299!8.50e-13!25;DOID:3493!1.57e-11!2;DOID:162!1.23e-07!235;DOID:14566!2.22e-07!239;DOID:3111!4.51e-07!1;DOID:3603!4.51e-07!1;DOID:2152!5.37e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.37e-39;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.28e-39,14 | |||
|ontology_enrichment_uberon=UBERON:0003729!6.02e-19!5;UBERON:0004815!4.88e-18!3;UBERON:0002031!4.88e-18!3;UBERON:0000344!6.83e-17!12;UBERON:0003343!6.94e-14!4;UBERON:0004785!6.94e-14!4;UBERON:0002185!1.16e-13!4;UBERON:0002294!1.59e-07!7;UBERON:0001173!1.59e-07!7;UBERON:0004912!1.59e-07!7;UBERON:0004645!4.78e-07!1;UBERON:0001256!4.78e-07!1;UBERON:0001259!4.78e-07!1;UBERON:0004911!5.37e-07!1;UBERON:0004913!6.02e-07!1;UBERON:0003703!6.02e-07!1;UBERON:0001174!6.02e-07!1;UBERON:0004914!6.02e-07!1;UBERON:0004119!7.56e-07!169;UBERON:0000925!7.56e-07!169;UBERON:0006595!7.56e-07!169;UBERON:0001911!8.04e-07!4;UBERON:0005333!8.04e-07!4;UBERON:0008425!8.04e-07!4;UBERON:0005311!8.04e-07!4;UBERON:0007196!8.57e-07!14;UBERON:0001558!8.57e-07!14;UBERON:0001007!8.70e-07!155;UBERON:0001555!8.70e-07!155;UBERON:0007026!8.70e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;5.43e-23;4!UBERON:0004785;5.43e-23;4!UBERON:0000974;1.09e-15;6!UBERON:0001723;9.66e-09;3!UBERON:0001033;9.66e-09;3!UBERON:0004815;1.26e-08;3!UBERON:0002031;1.26e-08;3!UBERON:0003729;9.35e-08;13!UBERON:0001911;6.87e-07;4!UBERON:0007196;8.58e-07;15!UBERON:0001558;8.58e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,7.18e-23,4;UBERON:0004785,7.18e-23,4;UBERON:0000974,9.24e-10,10;UBERON:0001723,9.66e-09,3;UBERON:0001033,9.66e-09,3;UBERON:0010056,9.66e-09,3;UBERON:0004815,1.12e-08,3;UBERON:0002031,1.12e-08,3;UBERON:0003729,1.02e-07,13;UBERON:0001911,6.87e-07,4;UBERON:0005333,6.87e-07,4;UBERON:0008425,6.87e-07,4;UBERON:0005311,6.87e-07,4;UBERON:0007196,8.58e-07,15;UBERON:0001558,8.58e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,3.76145795351963,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34060455107157,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,5.23449862113298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174118413160805,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0.144090417154106,0,0,0.288109595976299,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.943757786781923,1.10057159113007,2.07946199070609,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0.335566295393377,0.098150233615243,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42843150884526,1.76447435857846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.407016343054873,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:72940334..72940358,+ | |||
}} |
Latest revision as of 20:58, 25 July 2015
Short description: | p@chr17:72940334..72940358, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:72940334..72940358, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 1.02e-10 | 9 |
epithelial cell of lower respiratory tract | 1.02e-10 | 9 |
squamous epithelial cell | 6.11e-09 | 63 |
endo-epithelial cell | 9.42e-09 | 42 |
bronchial epithelial cell | 1.12e-08 | 3 |
duct epithelial cell | 1.40e-08 | 3 |
branched duct epithelial cell | 1.40e-08 | 3 |
tracheal epithelial cell | 1.40e-08 | 3 |
tracheoblast | 1.40e-08 | 3 |
respiratory epithelial cell | 1.05e-07 | 13 |
mammary gland epithelial cell | 6.87e-07 | 4 |
epithelial cell | 8.89e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 7.18e-23 | 4 |
respiratory system mucosa | 7.18e-23 | 4 |
neck | 9.24e-10 | 10 |
tongue | 9.66e-09 | 3 |
gustatory system | 9.66e-09 | 3 |
future tongue | 9.66e-09 | 3 |
lower respiratory tract epithelium | 1.12e-08 | 3 |
epithelium of bronchus | 1.12e-08 | 3 |
mouth mucosa | 1.02e-07 | 13 |
mammary gland | 6.87e-07 | 4 |
mammary bud | 6.87e-07 | 4 |
mammary ridge | 6.87e-07 | 4 |
mammary placode | 6.87e-07 | 4 |
tracheobronchial tree | 8.58e-07 | 15 |
lower respiratory tract | 8.58e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.28e-39 | 14 |