FFCP PHASE1:Hg19::chr18:61171128..61171130,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr18:61171128..61171130,+ | |||
|coexpression_cluster_id=C3736 | |||
|description=CAGE_peak_at_chr18:61171128..61171130,+ | |||
|id=chr18:61171128..61171130,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.23e-27!254;CL:0002076!1.76e-25!43;CL:0002251!2.02e-17!21;CL:0000223!8.28e-17!59;CL:0000622!1.37e-13!5;CL:0000154!3.02e-11!6;CL:0002368!3.81e-09!13;CL:0002623!4.13e-09!3;CL:0002159!4.28e-09!13;CL:0002328!9.05e-09!3;CL:0002621!9.29e-09!3;CL:0002166!2.21e-08!3;CL:0002150!2.84e-08!3;CL:0000861!2.84e-08!3;CL:0000076!3.12e-08!62;CL:0000150!2.46e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.98e-22;42!CL:0000240;7.98e-22;6!CL:0000311;7.98e-22;6!CL:0000079;7.98e-22;6!CL:0000237;7.98e-22;6!CL:0002328;7.86e-20;3!CL:0002621;7.86e-20;3!CL:0002623;7.86e-20;3!CL:0002251;1.09e-17;20!CL:0002336;1.66e-15;1!CL:0002261;1.66e-15;1!CL:0002170;1.66e-15;1!CL:0002202;8.86e-15;9!CL:0002632;8.86e-15;9!CL:0000312;2.66e-12;5!CL:0000622;2.66e-12;5!CL:0002368;2.03e-10;13!CL:0000154;2.09e-10;6!CL:0000150;3.14e-07;9!CL:0000362;3.14e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.18e-26,42;CL:0000240,6.70e-22,6;CL:0000311,6.70e-22,6;CL:0000079,6.70e-22,6;CL:0000237,6.70e-22,6;CL:0000036,6.70e-22,6;CL:0000357,6.70e-22,6;CL:0000114,6.70e-22,6;CL:0002621,7.16e-20,3;CL:0002328,7.88e-20,3;CL:0002623,7.88e-20,3;CL:0000223,6.76e-19,58;CL:0002251,9.68e-18,20;CL:0002336,1.16e-15,1;CL:0002261,1.16e-15,1;CL:0002170,1.16e-15,1;CL:0002202,6.85e-15,9;CL:0002632,6.85e-15,9;CL:0000312,2.67e-12,5;CL:0000622,2.67e-12,5;CL:0002368,1.70e-10,13;CL:0000154,2.09e-10,6;CL:0000150,3.14e-07,9;CL:0000362,3.14e-07,9;CL:0000066,8.73e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000357;7.98e-22;6!CL:0000114;7.98e-22;6!CL:0000223;8.59e-10;58 | |||
|ontology_enrichment_disease=DOID:1749!1.33e-21!14;DOID:305!1.75e-14!106;DOID:0050687!3.00e-10!143 | |||
|ontology_enrichment_disease_v019=DOID:3151;5.98e-16;1!DOID:3149;5.98e-16;1!DOID:3451;1.24e-08;2!DOID:4159;1.24e-08;2!DOID:0060122;1.24e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,6.44e-16,1;DOID:3149,6.44e-16,1;DOID:3451,1.29e-08,2;DOID:4159,1.29e-08,2;DOID:0060122,1.29e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0001004!5.30e-22!72;UBERON:0001737!3.13e-17!9;UBERON:0004119!4.24e-14!169;UBERON:0000925!4.24e-14!169;UBERON:0006595!4.24e-14!169;UBERON:0000065!4.57e-14!53;UBERON:0000161!1.24e-12!35;UBERON:0000166!2.44e-12!21;UBERON:0000072!8.53e-12!46;UBERON:0003729!9.19e-12!5;UBERON:0008947!1.16e-11!38;UBERON:0003258!1.16e-11!38;UBERON:0001557!2.12e-11!19;UBERON:0001007!2.38e-11!155;UBERON:0001555!2.38e-11!155;UBERON:0007026!2.38e-11!155;UBERON:0000165!1.60e-10!28;UBERON:0000930!1.60e-10!28;UBERON:0003343!3.13e-09!4;UBERON:0004785!3.13e-09!4;UBERON:0004815!9.05e-09!3;UBERON:0002031!9.05e-09!3;UBERON:0001949!9.29e-09!3;UBERON:0000077!1.17e-08!130;UBERON:0001041!1.39e-08!98;UBERON:0004921!7.13e-08!129;UBERON:0004185!7.13e-08!129;UBERON:0005153!1.51e-07!37;UBERON:0003102!1.86e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;7.86e-20;3!UBERON:0002031;7.86e-20;3!UBERON:0001949;7.86e-20;3!UBERON:0000165;1.20e-12;28!UBERON:0002185;2.66e-12;5!UBERON:0000161;3.19e-12;19!UBERON:0000166;3.19e-12;19!UBERON:0004807;1.36e-10;22!UBERON:0003729;2.03e-10;13!UBERON:0001044;2.09e-10;6!UBERON:0003293;2.09e-10;6!UBERON:0003294;2.09e-10;6!UBERON:0010047;2.09e-10;6!UBERON:0003408;2.09e-10;6!UBERON:0000167;2.09e-10;6!UBERON:0007196;4.18e-09;15!UBERON:0001558;4.18e-09;15!UBERON:0000485;4.75e-09;7!UBERON:0003929;4.75e-09;7!UBERON:0003350;5.00e-08;8!UBERON:0001828;5.00e-08;8!UBERON:0010371;1.58e-07;31!UBERON:0000344;5.85e-07;20!UBERON:0005911;6.40e-07;36!UBERON:0001004;7.40e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,7.16e-20,3;UBERON:0004815,7.88e-20,3;UBERON:0002031,7.88e-20,3;UBERON:0002185,2.67e-12,5;UBERON:0000165,3.02e-12,29;UBERON:0000930,3.02e-12,29;UBERON:0003102,1.02e-10,99;UBERON:0000166,1.32e-10,22;UBERON:0003729,1.81e-10,13;UBERON:0001044,2.09e-10,6;UBERON:0003293,2.09e-10,6;UBERON:0003294,2.09e-10,6;UBERON:0010047,2.09e-10,6;UBERON:0000167,2.09e-10,6;UBERON:0000161,8.50e-10,36;UBERON:0007196,3.59e-09,15;UBERON:0001558,3.59e-09,15;UBERON:0001004,6.57e-09,74;UBERON:0004807,2.20e-08,28;UBERON:0003350,4.83e-08,8;UBERON:0001828,4.83e-08,8;UBERON:0001444,3.13e-07,49;UBERON:0000485,3.14e-07,9;UBERON:0000344,5.45e-07,20;UBERON:0001007,5.88e-07,145;UBERON:0001555,5.88e-07,145;UBERON:0007026,5.88e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,1.83884244895785,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73934767846967,1.36373060295417,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.473227200159376,0.337169380156203,0,0.661763836394364,0.435758888184812,0.71181185733329,0.674156540800822,0.98110732562673,0.38474715694639,0,0,0,0,0,0,0,0,0,0,1.64625428112938,0,1.50793458617446,1.66659201285353,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.708875486211932,2.5971971583826,0.871901815541886,0.383382679165211,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,1.01289087829486,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0.826424576804891,0.576570202095319,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92444225451024,0,0,0,0,0,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,1.25481369850743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0.34823682632161,0,0,0.677294319023596,0.146178634172371,0.821154570532092,0.290967049465258,0,0.225980740780532,0,0,0,0.391102765469606,0,0,0,0.144090417154106,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,2.0126081255956,0,0,0,0.179287339332845,0.575745591958336,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0.556157009460346,0,0,0,0,0,0,0,0,0,0,0,1.65772931330429,1.3657478167516,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0.641930933513346,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0.0918948995348449,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0,0,0.653150243690884,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr18:61171128..61171130,+ | |||
}} |
Latest revision as of 01:51, 26 July 2015
Short description: | p@chr18:61171128..61171130, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:61171128..61171130, + |
Coexpression cluster: | C3736_Keratinocyte_Mammary_salivary_Mallassezderived_Bronchial_keratoacanthoma_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.18e-26 | 42 |
stratified squamous epithelial cell | 6.70e-22 | 6 |
keratin accumulating cell | 6.70e-22 | 6 |
stratified epithelial cell | 6.70e-22 | 6 |
keratinizing barrier epithelial cell | 6.70e-22 | 6 |
epithelial fate stem cell | 6.70e-22 | 6 |
stratified epithelial stem cell | 6.70e-22 | 6 |
surface ectodermal cell | 6.70e-22 | 6 |
gingival epithelial cell | 7.16e-20 | 3 |
bronchial epithelial cell | 7.88e-20 | 3 |
acinar cell of salivary gland | 7.88e-20 | 3 |
endodermal cell | 6.76e-19 | 58 |
epithelial cell of alimentary canal | 9.68e-18 | 20 |
buccal mucosa cell | 1.16e-15 | 1 |
endothelial cell of viscerocranial mucosa | 1.16e-15 | 1 |
keratinized cell of the oral mucosa | 1.16e-15 | 1 |
epithelial cell of tracheobronchial tree | 6.85e-15 | 9 |
epithelial cell of lower respiratory tract | 6.85e-15 | 9 |
keratinocyte | 2.67e-12 | 5 |
acinar cell | 2.67e-12 | 5 |
respiratory epithelial cell | 1.70e-10 | 13 |
protein secreting cell | 2.09e-10 | 6 |
glandular epithelial cell | 3.14e-07 | 9 |
epidermal cell | 3.14e-07 | 9 |
epithelial cell | 8.73e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 7.16e-20 | 3 |
lower respiratory tract epithelium | 7.88e-20 | 3 |
epithelium of bronchus | 7.88e-20 | 3 |
bronchus | 2.67e-12 | 5 |
mouth | 3.02e-12 | 29 |
stomodeum | 3.02e-12 | 29 |
surface structure | 1.02e-10 | 99 |
oral opening | 1.32e-10 | 22 |
mouth mucosa | 1.81e-10 | 13 |
saliva-secreting gland | 2.09e-10 | 6 |
gland of oral region | 2.09e-10 | 6 |
gland of foregut | 2.09e-10 | 6 |
oral gland | 2.09e-10 | 6 |
oral cavity | 2.09e-10 | 6 |
orifice | 8.50e-10 | 36 |
tracheobronchial tree | 3.59e-09 | 15 |
lower respiratory tract | 3.59e-09 | 15 |
respiratory system | 6.57e-09 | 74 |
respiratory system epithelium | 2.20e-08 | 28 |
epithelium of mucosa | 4.83e-08 | 8 |
gingiva | 4.83e-08 | 8 |
subdivision of head | 3.13e-07 | 49 |
simple columnar epithelium | 3.14e-07 | 9 |
mucosa | 5.45e-07 | 20 |
digestive system | 5.88e-07 | 145 |
digestive tract | 5.88e-07 | 145 |
primitive gut | 5.88e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 6.44e-16 | 1 |
keratoacanthoma | 6.44e-16 | 1 |
skin carcinoma | 1.29e-08 | 2 |
skin cancer | 1.29e-08 | 2 |
integumentary system cancer | 1.29e-08 | 2 |