FFCP PHASE1:Hg19::chr18:76740189..76740203,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27164 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10527 | |||
|TSSclassifier=strong | |||
|UniProt=F5GXY4,Q9BXA9 | |||
|association_with_transcript=-71bp_to_ENST00000536229,ENST00000537592,ENST00000543056,NM_171999,uc002lmt.2_5end | |||
|cluster_id=chr18:76740189..76740203,+ | |||
|description=CAGE_peak_3_at_SALL3_5end | |||
|id=chr18:76740189..76740203,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.16e-14!5;CL:0000047!5.07e-12!8;CL:0000540!2.40e-11!6;CL:0000031!2.40e-11!6;CL:0000404!2.40e-11!6;CL:0002319!1.91e-09!25;CL:0000148!2.55e-09!10;CL:0000541!2.55e-09!10;CL:0002605!1.82e-08!3;CL:0000133!2.90e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0002322;4.71e-98;5!CL:0002321;5.51e-33;15!CL:0000148;6.43e-32;10!CL:0000147;5.89e-23;14!CL:0000710;3.26e-16;20!CL:0000075;4.08e-12;27!CL:0000047;3.02e-11;2!CL:0002077;2.57e-08;34!CL:0002567;6.34e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,5.79e-98,5;CL:0000148,5.94e-32,10;CL:0000541,5.94e-32,10;CL:0000147,5.57e-23,14;CL:0000710,3.14e-16,20;CL:0000075,3.97e-12,27;CL:0000133,1.25e-11,59;CL:0000047,6.94e-11,8;CL:0002077,1.05e-09,34;CL:0000221,1.43e-09,72;CL:0002567,4.84e-08,3;CL:0000333,9.74e-08,41 | |||
|ontology_enrichment_development_v019=CL:0000133;7.33e-09;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.97e-57!82;UBERON:0005743!4.81e-54!86;UBERON:0001049!3.66e-52!57;UBERON:0005068!3.66e-52!57;UBERON:0006241!3.66e-52!57;UBERON:0007135!3.66e-52!57;UBERON:0001893!1.53e-48!34;UBERON:0002020!2.65e-48!34;UBERON:0003528!2.65e-48!34;UBERON:0000073!8.57e-48!94;UBERON:0001016!8.57e-48!94;UBERON:0002791!1.87e-46!33;UBERON:0001869!3.98e-44!32;UBERON:0000955!4.90e-43!69;UBERON:0006238!4.90e-43!69;UBERON:0002780!2.02e-42!41;UBERON:0001890!2.02e-42!41;UBERON:0006240!2.02e-42!41;UBERON:0002616!1.70e-41!59;UBERON:0003080!3.08e-41!42;UBERON:0003075!5.62e-35!86;UBERON:0007284!5.62e-35!86;UBERON:0000956!4.69e-33!25;UBERON:0000203!4.69e-33!25;UBERON:0002346!6.00e-33!90;UBERON:0003056!5.06e-28!61;UBERON:0002619!9.89e-27!22;UBERON:0007023!2.53e-23!115;UBERON:0001950!1.67e-22!20;UBERON:0004121!1.88e-22!169;UBERON:0000924!1.19e-21!173;UBERON:0006601!1.19e-21!173;UBERON:0000033!4.25e-21!123;UBERON:0000153!1.21e-19!129;UBERON:0007811!1.21e-19!129;UBERON:0002308!1.06e-16!9;UBERON:0000125!1.06e-16!9;UBERON:0002420!1.03e-12!9;UBERON:0007245!1.03e-12!9;UBERON:0010009!1.03e-12!9;UBERON:0010011!1.03e-12!9;UBERON:0000454!1.03e-12!9;UBERON:0009663!1.29e-12!7;UBERON:0000025!2.64e-12!194;UBERON:0003076!8.33e-12!15;UBERON:0003057!8.33e-12!15;UBERON:0000369!7.31e-11!4;UBERON:0002435!7.31e-11!4;UBERON:0000204!7.31e-11!4;UBERON:0010082!7.31e-11!4;UBERON:0000473!8.38e-11!8;UBERON:0002298!1.00e-10!8;UBERON:0004111!1.89e-10!241;UBERON:0003101!5.36e-09!22;UBERON:0000079!5.36e-09!22;UBERON:0002021!1.07e-08!5;UBERON:0005383!1.37e-08!3;UBERON:0005382!1.37e-08!3;UBERON:0000349!2.28e-08!5;UBERON:0002240!2.53e-08!3;UBERON:0001872!3.57e-08!5;UBERON:0006331!5.09e-08!3;UBERON:0000988!1.01e-07!3;UBERON:0000477!1.13e-07!286;UBERON:0003135!1.18e-07!11;UBERON:0000922!2.35e-07!612;UBERON:0001871!5.13e-07!7;UBERON:0000064!5.29e-07!219;UBERON:0004733!9.00e-07!12;UBERON:0002028!9.00e-07!12;UBERON:0007277!9.00e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.70e-09;49 | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.684372125364421,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763188581434,1.32529768321485,1.51052125730374,1.0366105501537,1.51392510525377,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0,0,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,0,0,0.502548796003046,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.184161977871793,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0.915694648183434,0.742585499285292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0.306806047506464,0,0,0,0,0,0,0,0,0.969332746095218,0.463840490809256,0,0,0,0,0,0,0.709163045303809,0,0,0,0.885741385813839,0.361789315876224,0,0.221158519862449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.67401132980677,0,0,0,0,0,0,0,0.30607276163049,0,0,0.311064574191741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.544813624446302,0.964518890790115,0.962776056180637,0.415440338029185,0,0,0.242998226632099,0,0.157611414598396,0.367182116944987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.332787154610557,0.993542447062135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513833800771676,0,0.159633859057151,0.82046545696302,0.756215088665154,0.899044282034833,0.322951291263702,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0.337687923091973,0,0.413373593002368,0.317079050969534,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0.263091094251396,0,0,0.156986185701028,0.628462359664008,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.67767649223376,0,0,0,0,0,0,0,0.392616934229891,0.594092800654172,0.4226557275834,0,0,0,0,0,0,0,0,0,0.430018749454354,0,0.475940431336403,0.436350690340377,0,0,0,0,0,0,0,0.407955318967927,0.801652215796681,2.38926738790597,0.250707539292375,0.0757786982182394,0.267964130156178,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@SALL3 | |||
}} |
Latest revision as of 19:13, 24 September 2015
Short description: | p3@SALL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SALL3_5end |
Coexpression cluster: | NA |
Association with transcript: | -71bp_to_ENST00000536229, ENST00000537592, ENST00000543056, NM_171999, uc002lmt.2_5end |
EntrezGene: | SALL3 |
HGNC: | 10527 |
UniProt: | F5GXY4Q9BXA9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.79e-98 | 5 |
melanocyte | 5.94e-32 | 10 |
melanoblast | 5.94e-32 | 10 |
pigment cell | 5.57e-23 | 14 |
neurecto-epithelial cell | 3.14e-16 | 20 |
columnar/cuboidal epithelial cell | 3.97e-12 | 27 |
neurectodermal cell | 1.25e-11 | 59 |
neuronal stem cell | 6.94e-11 | 8 |
ecto-epithelial cell | 1.05e-09 | 34 |
ectodermal cell | 1.43e-09 | 72 |
light melanocyte | 4.84e-08 | 3 |
migratory neural crest cell | 9.74e-08 | 41 |