FFCP PHASE1:Hg19::chr19:43709772..43709796,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5672 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9521 | |||
|TSSclassifier=strong | |||
|UniProt=C9JWP2,B3KQL2,Q00888,Q6P520 | |||
|association_with_transcript=0bp_to_ENST00000451895,NM_002780,NM_213633,uc002ovy.2,uc002ovz.2,uc002owa.2,uc002owb.2_5end | |||
|cluster_id=chr19:43709772..43709796,- | |||
|coexpression_cluster_id=C34 | |||
|description=CAGE_peak_1_at_PSG4_5end | |||
|id=chr19:43709772..43709796,- | |||
|ontology_enrichment_celltype=CL:0000359!5.52e-12!32;CL:0000055!5.09e-10!180;CL:0000057!1.39e-09!75;CL:0000192!2.42e-09!42;CL:0000514!2.42e-09!42;CL:0002539!2.01e-07!10;CL:0000222!2.32e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.55e-09;32!CL:0002138;1.43e-08;6!CL:0000077;6.29e-07;19!CL:0002539;7.05e-07;10!CL:0000192;7.66e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.63e-09,32;CL:0000057,3.57e-09,76;CL:0005020,1.59e-08,6;CL:0002138,1.59e-08,6;CL:0005022,1.59e-08,6;CL:0000192,6.70e-08,43;CL:0000514,6.70e-08,43;CL:0000222,7.41e-08,121;CL:0000077,6.65e-07,19;CL:0002539,6.95e-07,10 | |||
|ontology_enrichment_development_v019=CL:0005022;1.43e-08;6!CL:0000514;7.66e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004573!1.96e-08!33;UBERON:0004571!1.96e-08!33;UBERON:0003102!1.44e-07!95;UBERON:0001637!1.85e-07!42;UBERON:0003509!1.85e-07!42;UBERON:0004572!1.85e-07!42;UBERON:0004237!2.01e-07!10;UBERON:0004695!2.01e-07!10;UBERON:0002111!2.01e-07!10;UBERON:0004178!2.01e-07!10;UBERON:0002097!2.11e-07!40;UBERON:0002049!7.05e-07!79;UBERON:0007798!7.05e-07!79;UBERON:0000055!7.78e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;8.52e-08;41!UBERON:0002199;6.92e-07;46!UBERON:0002416;6.92e-07;46!UBERON:0004237;7.05e-07;10!UBERON:0004695;7.05e-07;10!UBERON:0002111;7.05e-07;10!UBERON:0004178;7.05e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.35e-09,41;UBERON:0002199,4.67e-09,46;UBERON:0002416,4.67e-09,46;UBERON:0004237,6.95e-07,10;UBERON:0004695,6.95e-07,10;UBERON:0002111,6.95e-07,10;UBERON:0004178,6.95e-07,10 | |||
|phase1_expression=5.4503513781167,5.35251309727458,0.140954404095971,3.00219895059391,0.893922188854576,2.61701557230111,0,0,0,0,0,2.62129646556207,2.11013582582763,0,0,1.34465029290355,6.02694528023977,4.38186054232424,5.85519358548608,0,0,0,0,0,0,0,0,0,0,0,0,0,1.204823675113,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47631645505977,0,0.486634870302636,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,11.1119206442811,14.2306505074684,1.67360306382335,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0,18.1081631680349,79.3130993071181,0,0,3.92474320099615,0,1.72667283892012,0,0,0,0,0,1.40592859100278,0,0,0.747243402759005,0,0.161872944368132,0,0,2.08818339430006,0,1.18800285728205,0,0,0,0,0.250237039743928,0.277064115484183,0,0.919463387397059,0,0,0.179389635688862,0,47.0488820574227,43.2131178361539,36.9958579965996,0,0,87.4261401009759,12.1796256451498,12.8741224864498,63.4223801645443,0,6.74518225781567,12.7955164749103,0.339121184620975,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,29.7195473940467,22.3782639317572,1.0647612003586,1.85443159085912,0.241011029883482,1.54411561825352,1.96091499683166,0.474541238222193,0.808987848960987,0.784885860501384,0,0,0,0,1.47008711385542,0,0,0,0,0.368965315629341,0.171567810298526,2.41450627898976,1.1240175325762,6.33332526193274,0,4.88712457965487,0,0,0,2.11335649624479,1.15493158208859,4.1668696131895,2.28304982681518,0,0,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,4.91232519879556,0,0,19.6794206272804,12.4808924293639,0,0,0,0,0,0,0,0,0,0,8.71533458600294,0,0,0,0,0.239624855491583,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,62.5992293207729,66.7324418101385,0.315404830067869,72.6276772954822,0,0,0,0,0.184369168541703,29.4535453046801,0,0,0,0,0,1.5156378572313,26.6296703216795,0,18.856193394227,24.2469917795139,13.4716845327875,0,25.0736552042685,13.511729376063,0,0,6.74734556189883,0.246381468041427,0,0,0,6.01519410909855,1.01289087829486,4.47776347841966,21.6688489927993,0.655622074797121,2.25599806453706,25.261030570248,0,0,7.70526890917993,0,0,0,0,1.08378575017541,0.501689773854853,2.80363900349542,2.49322802678617,0,0,0,0,20.0088933876821,27.9825419411301,645.861061007923,0,0,0,0,16.068392984416,0,0,0,0,0,0,0,0,0,0.960950336825531,13.1441093869422,0.910420027699949,0,21.0924272376529,6.970372701606,0.616067160352178,0.532306030317022,6.95946393660058,1.8532421910392,0,0,1.2655176988749,4.76575484809562,0,0,2.86382923133343,0,0,0,0,1.61745985258653,0,0.421258456238981,0,0.487426979262569,0,8.05349477307116,0,4.52032466480971,0.551365343546124,27.20099798489,12.7150756723591,0,0,0.202910376962704,0,0,2.15117028306077,6.87743287091848,0.35667105148125,2.48332744849418,0,1.64647446479951,0,0,0.48111056362756,0,0,583.4091334137,0,0,0,0,0,0,0,0,0,0,0,0,38.2430174636354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306806047506464,0,38.5689088700641,0,6.26574111364632,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,78.4807103469549,0,0,0,0,0,0,0,0,0,0.871507708151921,0,0,0,0,0.0897576444097721,0.108647371922008,0.31900115973192,4.30508688988753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,36.6519259703495,0,9.97518988335376,0.290268993867255,0.584714536689484,0.164230914106418,0.290967049465258,0.353024506766001,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,12.6390911648461,12.238533018543,6.93587879926988,0,0,0,0,0,0,0,0.458320848023367,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68347750079413,0.945668487590378,0,0,0,0.191915197319445,0,0,0,0,5.18532894720761,0,0,0,0,6.91203758272767,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36484205787483,0,0,0,0,0.447764408660622,0,1.10961172300523,0,0,0,6.17868184671694,0,0,0,0.955780602982214,1.34940933649081,0,0.829412415681711,2.92425886013794,17.2175870397872,0,3.42724690951916,0.406870733204662,0,0,0.464033759878494,23.4876574332183,0,0,0,0,1.34833881285112,0,0,0,5.09349443512435,14.6842022703881,42.264966495231,0,0,20.1425626378304,30.2875040085336,0.675769762612291,1.28120759293973,0.690860683462397,113.643623610341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,15.5177415223901,44.7118396935672,0,0,0,0,0,0,0,0,0,0,0,0.693153996902029,1.52552838186867,0,0,0,0.20170506870352,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0.455324382702595,1749.92035856854,0,0,0.0679697329768317,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0.414432328326074,0,0,0,0,0,0,0,2.48165108531456,0,0,0,0,0,0,0,1.94284397223656,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.95192029066802,0.462175628631418,8.21990468035199,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0,0,2.80329656451534,0,0,0.653150243690884,0.342233301085281,0.606168477131288,0.143444410785353,0,0,0.213454691755431,0,0,0,0,0,0,0,0 | |||
|short_description=p1@PSG4 | |||
}} |
Latest revision as of 10:39, 18 September 2015
Short description: | p1@PSG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PSG4_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | 0bp_to_ENST00000451895, NM_002780, NM_213633, uc002ovy.2, uc002ovz.2, uc002owa.2, uc002owb.2_5end |
EntrezGene: | PSG4 |
HGNC: | 9521 |
UniProt: | C9JWP2B3KQL2Q00888Q6P520 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.63e-09 | 32 |
fibroblast | 3.57e-09 | 76 |
lymphangioblast | 1.59e-08 | 6 |
endothelial cell of lymphatic vessel | 1.59e-08 | 6 |
vascular lymphangioblast | 1.59e-08 | 6 |
smooth muscle cell | 6.70e-08 | 43 |
smooth muscle myoblast | 6.70e-08 | 43 |
mesodermal cell | 7.41e-08 | 121 |
mesothelial cell | 6.65e-07 | 19 |
aortic smooth muscle cell | 6.95e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
skin of body | 1.35e-09 | 41 |
integument | 4.67e-09 | 46 |
integumental system | 4.67e-09 | 46 |
blood vessel smooth muscle | 6.95e-07 | 10 |
arterial system smooth muscle | 6.95e-07 | 10 |
artery smooth muscle tissue | 6.95e-07 | 10 |
aorta smooth muscle tissue | 6.95e-07 | 10 |