FFCP PHASE1:Hg19::chr1:145727518..145727529,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5174 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8821 | |||
|TSSclassifier=strong | |||
|UniProt=Q5T2W1,B4DPB9,E7EU02 | |||
|association_with_transcript=-136bp_to_NM_001201325,NM_001201326,NM_002614_5end | |||
|cluster_id=chr1:145727518..145727529,+ | |||
|coexpression_cluster_id=C2520 | |||
|description=CAGE_peak_6_at_PDZK1_5end | |||
|id=chr1:145727518..145727529,+ | |||
|ontology_enrichment_celltype=CL:0000349!1.54e-13!3;CL:0002577!1.54e-13!3;CL:0002541!1.21e-12!3;CL:0002536!1.30e-09!2;CL:0002537!5.35e-08!5;CL:0000066!1.25e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.57e-41;19!CL:0002577;2.95e-31;3!CL:0002536;1.98e-21;2!CL:0002541;4.72e-14;3!CL:0002563;6.65e-11;4!CL:0002537;6.70e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.54e-41,19;CL:0002577,4.01e-31,3;CL:0002536,2.08e-21,2;CL:0002541,4.42e-14,3;CL:0002563,7.72e-11,4;CL:0002537,5.95e-09,5 | |||
|ontology_enrichment_development_v019=UBERON:0006215;7.03e-14;3 | |||
|ontology_enrichment_disease=DOID:299!7.49e-09!25;DOID:4468!1.14e-08!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!5.33e-40!14;UBERON:0000158!5.33e-40!14;UBERON:0003124!7.14e-28!7;UBERON:0000478!3.51e-22!24;UBERON:0001987!5.46e-17!4;UBERON:0004340!5.46e-17!4;UBERON:0000305!7.34e-15!7;UBERON:0004871!5.83e-13!8;UBERON:0000476!1.21e-12!3;UBERON:0000920!1.21e-12!3;UBERON:0004923!6.17e-11!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.97e-35;10!UBERON:0000158;1.97e-35;10!UBERON:0000478;1.16e-32;24!UBERON:0001987;1.27e-23;4!UBERON:0000305;2.91e-23;7!UBERON:0003124;4.72e-14;3!UBERON:0000920;4.72e-14;3!UBERON:0001242;6.65e-11;4!UBERON:0001262;6.65e-11;4!UBERON:0004786;6.65e-11;4!UBERON:0004808;6.65e-11;4!UBERON:0001277;6.65e-11;4!UBERON:0004923;2.16e-07;55!UBERON:0002037;2.18e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,9.93e-57,14;UBERON:0000158,9.93e-57,14;UBERON:0003124,1.12e-35,7;UBERON:0000478,1.14e-32,24;UBERON:0001987,1.60e-23,4;UBERON:0004340,1.60e-23,4;UBERON:0000305,2.52e-23,7;UBERON:0004871,1.89e-20,8;UBERON:0004923,1.01e-16,66;UBERON:0000920,4.42e-14,3;UBERON:0001242,7.72e-11,4;UBERON:0001262,7.72e-11,4;UBERON:0004786,7.72e-11,4;UBERON:0004808,7.72e-11,4;UBERON:0001277,7.72e-11,4;UBERON:0000995,5.43e-08,21;UBERON:0005795,1.23e-07,22;UBERON:0003975,1.23e-07,22;UBERON:0002037,2.18e-07,6;UBERON:0006215,2.18e-07,6;UBERON:0006554,2.37e-07,47;UBERON:0001008,3.45e-07,48;UBERON:0004175,9.84e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,8.95609625733706,3.16520373874144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,2.45976877086227,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12189300012382,11.6504807657348,10.5836602665388,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,2.65890789101569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.86493381685228,2.67268212749375,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0.236387681767936,0,0,0,0,0,0,1.43753037910592,1.18219047581419,0,0,0,0,0,0,0.0897576444097721,0.217294743844016,2.87101043758728,0.183195186803725,1.06606955203727,0,0,0,0,0,0,0,0,0.843992258112108,0.163232808159148,2.40300221437699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95551382734803,0,0,0.19980960958213,0.72045208577053,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0.0824158583811665,0.0674035438541849,0.393709926058995,0,0,0,0,0,0,0,0,0.0607495566580247,0,3.94028536495991,0.629455057619977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0.308801447160972,0,0,0,0,8.71221163199019,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0,0,0,0,3.88669664193519,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,4.1239236337929,0,0,0,0,0.243835849964539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p6@PDZK1 | |||
}} |
Latest revision as of 18:55, 16 September 2015
Short description: | p6@PDZK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PDZK1_5end |
Coexpression cluster: | C2520_mesothelioma_Placental_Amniotic_serous_kidney_renal_amniotic |
Association with transcript: | -136bp_to_NM_001201325, NM_001201326, NM_002614_5end |
EntrezGene: | PDZK1 |
HGNC: | 8821 |
UniProt: | Q5T2W1B4DPB9E7EU02 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.54e-41 | 19 |
placental epithelial cell | 4.01e-31 | 3 |
amniotic epithelial cell | 2.08e-21 | 2 |
chorionic membrane mesenchymal stem cell | 4.42e-14 | 3 |
intestinal epithelial cell | 7.72e-11 | 4 |
amnion mesenchymal stem cell | 5.95e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 9.93e-57 | 14 |
membranous layer | 9.93e-57 | 14 |
chorion | 1.12e-35 | 7 |
extraembryonic structure | 1.14e-32 | 24 |
placenta | 1.60e-23 | 4 |
allantois | 1.60e-23 | 4 |
amnion | 2.52e-23 | 7 |
somatic layer of lateral plate mesoderm | 1.89e-20 | 8 |
organ component layer | 1.01e-16 | 66 |
egg chorion | 4.42e-14 | 3 |
intestinal mucosa | 7.72e-11 | 4 |
wall of intestine | 7.72e-11 | 4 |
gastrointestinal system mucosa | 7.72e-11 | 4 |
gastrointestinal system epithelium | 7.72e-11 | 4 |
intestinal epithelium | 7.72e-11 | 4 |
uterus | 5.43e-08 | 21 |
embryonic uterus | 1.23e-07 | 22 |
internal female genitalia | 1.23e-07 | 22 |
cerebellum | 2.18e-07 | 6 |
rhombic lip | 2.18e-07 | 6 |
urinary system structure | 2.37e-07 | 47 |
renal system | 3.45e-07 | 48 |
internal genitalia | 9.84e-07 | 25 |