FFCP PHASE1:Hg19::chr1:154474220..154474231,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126669 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27004 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=357bp_to_uc001ffc.2_5end | |||
|cluster_id=chr1:154474220..154474231,- | |||
|description=CAGE_peak_5_at_SHE_5end | |||
|id=chr1:154474220..154474231,- | |||
|ontology_enrichment_celltype=CL:0000115!6.44e-18!35;CL:0002139!1.48e-13!24;CL:0002078!5.97e-13!44;CL:0000213!1.45e-09!57;CL:0000215!1.45e-09!57;CL:0000071!2.54e-08!18;CL:0002546!2.54e-08!18;CL:0005020!2.01e-07!6;CL:0002138!2.01e-07!6;CL:0005022!2.01e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000115;3.33e-11;36!CL:0002139;3.83e-10;24!CL:0000071;1.08e-09;18!CL:0002078;1.22e-08;45!CL:1000413;1.23e-07;9!CL:0002188;9.15e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,9.97e-15,36;CL:0002078,1.66e-11,45;CL:0002139,3.59e-10,24;CL:0000071,1.21e-09,18;CL:0002546,1.21e-09,18;CL:0000213,1.28e-08,58;CL:0000215,1.28e-08,58;CL:1000413,1.49e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;1.08e-09;18!UBERON:0010226;1.97e-08;1!UBERON:0010115;1.97e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.66e-54!115;UBERON:0004111!2.67e-12!241;UBERON:0000477!3.26e-11!286;UBERON:0000025!2.04e-09!194;UBERON:0000468!3.15e-09!659;UBERON:0000467!5.63e-09!625;UBERON:0000480!6.44e-09!626;UBERON:0001986!2.54e-08!18;UBERON:0004638!2.54e-08!18;UBERON:0004852!2.54e-08!18;UBERON:0001049!3.66e-08!57;UBERON:0005068!3.66e-08!57;UBERON:0006241!3.66e-08!57;UBERON:0007135!3.66e-08!57;UBERON:0002465!7.90e-08!10;UBERON:0003075!9.13e-08!86;UBERON:0007284!9.13e-08!86;UBERON:0002616!1.04e-07!59;UBERON:0001893!2.01e-07!34;UBERON:0003080!2.80e-07!42;UBERON:0002346!3.98e-07!90;UBERON:0001869!4.54e-07!32;UBERON:0001009!5.11e-07!113;UBERON:0003135!9.65e-07!11;UBERON:0002791!9.81e-07!33;UBERON:0003978!9.88e-07!3;UBERON:0009751!9.88e-07!3;UBERON:0000946!9.88e-07!3;UBERON:0002523!9.88e-07!3;UBERON:0005983!9.88e-07!3;UBERON:0002165!9.88e-07!3;UBERON:0002062!9.88e-07!3;UBERON:0007280!9.88e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;1.13e-10;3!UBERON:0004638;1.08e-09;18!UBERON:0001986;1.08e-09;18!UBERON:0004852;1.08e-09;18!UBERON:0002134;7.83e-09;1!UBERON:0005208;7.83e-09;1!UBERON:0004145;7.83e-09;1!UBERON:0005946;7.83e-09;1!UBERON:0005965;7.83e-09;1!UBERON:0002078;7.83e-09;1!UBERON:0002363;1.97e-08;1!UBERON:0000029;1.97e-08;1!UBERON:0002084;1.97e-08;1!UBERON:0000996;1.97e-08;1!UBERON:0002171;1.97e-08;1!UBERON:0002082;1.97e-08;1!UBERON:0006518;1.97e-08;1!UBERON:0008949;1.97e-08;1!UBERON:0000101;1.97e-08;1!UBERON:0002167;1.97e-08;1!UBERON:0000487;6.81e-08;22!UBERON:0003915;1.23e-07;9!UBERON:0004700;1.23e-07;9!UBERON:0001917;1.23e-07;9!UBERON:0006914;6.40e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,1.05e-10,3;UBERON:0004638,1.21e-09,18;UBERON:0001986,1.21e-09,18;UBERON:0004852,1.21e-09,18;UBERON:0002134,7.56e-09,1;UBERON:0005208,7.56e-09,1;UBERON:0005946,7.56e-09,1;UBERON:0005965,7.56e-09,1;UBERON:0002078,7.56e-09,1;UBERON:0000029,1.18e-08,1;UBERON:0000996,1.71e-08,1;UBERON:0002084,1.84e-08,1;UBERON:0002082,1.84e-08,1;UBERON:0010226,1.84e-08,1;UBERON:0002171,1.98e-08,1;UBERON:0006518,1.98e-08,1;UBERON:0008949,1.98e-08,1;UBERON:0000101,1.98e-08,1;UBERON:0002167,1.98e-08,1;UBERON:0007023,2.74e-08,114;UBERON:0002363,4.07e-08,1;UBERON:0007645,4.07e-08,1;UBERON:0007647,4.07e-08,1;UBERON:0010115,4.07e-08,1;UBERON:0000487,7.47e-08,22;UBERON:0003915,1.49e-07,9;UBERON:0004700,1.49e-07,9;UBERON:0001917,1.49e-07,9;UBERON:0001009,4.76e-07,112;UBERON:0004872,5.69e-07,83;UBERON:0006914,6.93e-07,25 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671746422719773,0.647787332037959,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,1.38856200643038,1.13061588384802,0,1.10047216776027,0.208994966536811,0.258416759169329,0.35576626268671,0,0.402829317109147,0,0,0.367663080345869,0,0.357198913136319,1.12264686313085,0.675668882899933,1.53316637465883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490385709340376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95262181849859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721832238805369,0.462985512576611,1.90254152234598,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0,3.08454505380579,0,0,0,0,0,0,0,0,0,0,1.23649213977267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0.996239941255349,0.552567831062295,0,0,0,0,0,0,0,0.493217028184668,0,0,0,0.278304294485554,0,0,0,5.79999660347835,0,0,0,0,0,0,0,0.60298219312704,0,0.331737779793674,0,0.219385397153973,0,0,0.307801034015188,0,0,0,0,0.31900115973192,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0.296521128680622,0.494255755786011,1.14864144456001,0.067401132980677,0,0,0,0,0,0.394584402849391,0,0,1.01098527405581,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.581934098930517,0,0.225980740780532,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,0.916641696046735,2.87149209830726,0.199679000498991,0.858452096273142,1.33902874465124,0.671834724867263,0,0,0,0.0824158583811665,0,0.0984274815147488,0,1.59045937961861,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0.472834243795189,0.262272940674991,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0.13223260174269,0,0,2.34932307648928,0,1.24271716604159,1.48849806543585,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0.573409195690071,0.221858103073705,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0.205116364240755,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.601682626794058,0,0.781514011233092,0,0,0,0.135075169236789,0,0,0.253663240775627,0,0,0.496211178389294,0,0,0,0,0,0,0.266107110487916,0,0,0,0.197318320688547,0,0,0.706437835654626,0.314231179832004,0,0,0,0,0.500335809236594,0,0,0,0,0.207216164163037,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0.647428837187895,0.307988420568741,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0,0,1.2217909337381,0.257831551894309,0,0,0,0,1.46067277649303,0,0,0,0.203974470572744,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0.250707539292375,0.227336094654718,0.535928260312357,0,0.103432995861895,0.426467963801962,0,0,0.0620747142958579,0,4.20071244635888,0.202117188958219,0.435433495793923,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0.611207220914332,0,1.33151354837103,0.402547587182052,0 | |||
|short_description=p5@SHE | |||
}} |
Latest revision as of 09:27, 17 September 2015
Short description: | p5@SHE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SHE_5end |
Coexpression cluster: | NA |
Association with transcript: | 357bp_to_uc001ffc.2_5end |
EntrezGene: | SHE |
HGNC: | 27004 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 9.97e-15 | 36 |
meso-epithelial cell | 1.66e-11 | 45 |
endothelial cell of vascular tree | 3.59e-10 | 24 |
blood vessel endothelial cell | 1.21e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.21e-09 | 18 |
lining cell | 1.28e-08 | 58 |
barrier cell | 1.28e-08 | 58 |
endothelial cell of artery | 1.49e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 1.05e-10 | 3 |
blood vessel endothelium | 1.21e-09 | 18 |
endothelium | 1.21e-09 | 18 |
cardiovascular system endothelium | 1.21e-09 | 18 |
tricuspid valve | 7.56e-09 | 1 |
right atrium valve | 7.56e-09 | 1 |
outflow tract of atrium | 7.56e-09 | 1 |
outflow part of right atrium | 7.56e-09 | 1 |
right cardiac atrium | 7.56e-09 | 1 |
lymph node | 1.18e-08 | 1 |
vagina | 1.71e-08 | 1 |
heart left ventricle | 1.84e-08 | 1 |
cardiac ventricle | 1.84e-08 | 1 |
future cardiac ventricle | 1.84e-08 | 1 |
lower lobe of right lung | 1.98e-08 | 1 |
right lung lobe | 1.98e-08 | 1 |
lower lobe of lung | 1.98e-08 | 1 |
lobe of lung | 1.98e-08 | 1 |
right lung | 1.98e-08 | 1 |
adult organism | 2.74e-08 | 114 |
dura mater | 4.07e-08 | 1 |
future meninx | 4.07e-08 | 1 |
ectomeninx | 4.07e-08 | 1 |
future dura mater | 4.07e-08 | 1 |
simple squamous epithelium | 7.47e-08 | 22 |
endothelial tube | 1.49e-07 | 9 |
arterial system endothelium | 1.49e-07 | 9 |
endothelium of artery | 1.49e-07 | 9 |
circulatory system | 4.76e-07 | 112 |
splanchnic layer of lateral plate mesoderm | 5.69e-07 | 83 |
squamous epithelium | 6.93e-07 | 25 |