FFCP PHASE1:Hg19::chr3:111852046..111852053,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=257144 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20253 | |||
|TSSclassifier=strong | |||
|UniProt=C9JY41 | |||
|association_with_transcript=18bp_to_ENST00000488580_5end | |||
|cluster_id=chr3:111852046..111852053,- | |||
|coexpression_cluster_id=C4267 | |||
|description=CAGE_peak_4_at_GCET2_5end | |||
|id=chr3:111852046..111852053,- | |||
|ontology_enrichment_celltype=CL:0000945!5.92e-50!24;CL:0000826!5.92e-50!24;CL:0000542!1.62e-31!53;CL:0000051!1.62e-31!53;CL:0000838!1.87e-29!52;CL:0000037!7.58e-23!172;CL:0000566!7.58e-23!172;CL:0000738!1.11e-22!140;CL:0000236!1.56e-21!14;CL:0000988!5.30e-21!182;CL:0002032!3.42e-20!165;CL:0000837!3.42e-20!165;CL:0002031!1.94e-17!124;CL:0002087!6.25e-16!119;CL:0000451!3.22e-13!10;CL:0000453!5.92e-11!5;CL:0000817!6.63e-11!3;CL:0000990!8.64e-09!8;CL:0000785!5.14e-08!2;CL:0000955!5.14e-08!2;CL:0000818!5.14e-08!2;CL:0000954!5.14e-08!2;CL:0000816!5.14e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000945;6.73e-86;24!CL:0000236;3.47e-30;13!CL:0000542;1.98e-26;53!CL:0000453;7.41e-16;5!CL:0000946;4.08e-10;1!CL:0000786;4.08e-10;1!CL:0000785;4.86e-10;1!CL:0000819;4.86e-10;1!CL:0000817;1.83e-09;1!CL:0000990;4.81e-09;8!CL:0000451;1.75e-07;10!CL:0002087;9.48e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,7.57e-86,24;CL:0000826,7.57e-86,24;CL:0000542,2.24e-42,53;CL:0000051,2.24e-42,53;CL:0000838,3.27e-38,52;CL:0000236,1.02e-36,14;CL:0000817,5.75e-26,3;CL:0000738,1.94e-23,136;CL:0002087,4.03e-20,115;CL:0002032,2.69e-19,161;CL:0000837,2.69e-19,161;CL:0000785,2.06e-18,2;CL:0000955,2.06e-18,2;CL:0000818,2.06e-18,2;CL:0000954,2.06e-18,2;CL:0000816,2.06e-18,2;CL:0000037,2.35e-18,168;CL:0000988,2.97e-17,177;CL:0002031,6.33e-17,120;CL:0000453,7.41e-16,5;CL:0000946,4.09e-10,1;CL:0000786,4.09e-10,1;CL:0000980,4.09e-10,1;CL:0000819,4.87e-10,1;CL:0000990,4.81e-09,8;CL:0000451,1.75e-07,10;CL:0000134,7.23e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000051;1.98e-26;53!CL:0000954;2.06e-18;2!UBERON:0001045;1.83e-09;1 | |||
|ontology_enrichment_disease=DOID:0060058!1.35e-15!10;DOID:2531!2.73e-10!51;DOID:0060083!2.73e-10!51 | |||
|ontology_enrichment_disease_v019=DOID:0060058;3.79e-21;10!DOID:630;4.46e-10;1!DOID:0050177;4.46e-10;1!DOID:0050427;4.46e-10;1!DOID:0060073;4.86e-10;1!DOID:8675;4.86e-10;1!DOID:12603;1.83e-09;1!DOID:2355;1.83e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.71e-21,10;DOID:630,4.46e-10,1;DOID:0050177,4.46e-10,1;DOID:0050427,4.46e-10,1;DOID:0060073,4.87e-10,1;DOID:8675,4.87e-10,1;DOID:12603,1.91e-09,1;DOID:2355,2.26e-09,1;DOID:2531,2.77e-07,51;DOID:0060083,2.77e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0004177!8.05e-11!7;UBERON:0002106!9.51e-10!3;UBERON:0004854!9.51e-10!3;UBERON:0009034!9.51e-10!3;UBERON:0002095!9.51e-10!3;UBERON:0004782!9.51e-10!3;UBERON:0003281!9.51e-10!3;UBERON:0009664!9.51e-10!3;UBERON:0002296!9.51e-10!3;UBERON:0005602!9.51e-10!3;UBERON:0001179!9.51e-10!3;UBERON:0006293!9.51e-10!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;1.83e-09;1!UBERON:0001153;1.83e-09;1!UBERON:0009854;1.83e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,1.62e-09,1;UBERON:0001153,1.62e-09,1;UBERON:0001045,1.62e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2857764471619,2.62721886239826,2.83358812729245,0,0,0,0,0,0,2.86628642147116,3.9807385096478,0.587200878669695,0,0,0.434021741431704,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63841583378639,1.77901850772711,0,2.80277190925209,1.14950487990897,1.98313461835459,0.954053754535364,0,0,0.382273228125229,0,0,0.263384084775077,0,0,0,0,0,0.473447805734733,0,0,0,0,0.541607727530031,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0.411362273086194,0,0,0,0,0,0,1.30062222588003,1.15415370381156,0.924843963529383,0,0,0.5745161103971,0,0,0,0.228234679033192,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0,0,2.8309505256046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,4.19646015196032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18542664892098,0,0,0,0,0,0.674921674654501,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0.992332043623902,0,0.974340787047167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53318401491205,2.92302648689399,3.92556946214026,0,0,0,0.999936979274649,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73495839002757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.1074013404563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0.322289439867886,10.5937625280425,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645889098360061,0.620747142958579,0,0,0,0,0,0.471464371102113,0,0,0,0,0,0,0,0,0,0,0.201273793591026,5.44966436915496 | |||
|short_description=p4@GCET2 | |||
}} |
Latest revision as of 13:22, 19 September 2015
Short description: | p4@GCET2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GCET2_5end |
Coexpression cluster: | C4267_splenic_plasma_Burkitt_diffuse_xeroderma_b_migratory |
Association with transcript: | 18bp_to_ENST00000488580_5end |
EntrezGene: | GCET2 |
HGNC: | 20253 |
UniProt: | C9JY41 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 7.57e-86 | 24 |
pro-B cell | 7.57e-86 | 24 |
lymphocyte | 2.24e-42 | 53 |
common lymphoid progenitor | 2.24e-42 | 53 |
lymphoid lineage restricted progenitor cell | 3.27e-38 | 52 |
B cell | 1.02e-36 | 14 |
precursor B cell | 5.75e-26 | 3 |
leukocyte | 1.94e-23 | 136 |
nongranular leukocyte | 4.03e-20 | 115 |
hematopoietic oligopotent progenitor cell | 2.69e-19 | 161 |
hematopoietic multipotent progenitor cell | 2.69e-19 | 161 |
mature B cell | 2.06e-18 | 2 |
pre-B-II cell | 2.06e-18 | 2 |
transitional stage B cell | 2.06e-18 | 2 |
small pre-B-II cell | 2.06e-18 | 2 |
immature B cell | 2.06e-18 | 2 |
hematopoietic stem cell | 2.35e-18 | 168 |
hematopoietic cell | 2.97e-17 | 177 |
hematopoietic lineage restricted progenitor cell | 6.33e-17 | 120 |
Langerhans cell | 7.41e-16 | 5 |
antibody secreting cell | 4.09e-10 | 1 |
plasma cell | 4.09e-10 | 1 |
plasmablast | 4.09e-10 | 1 |
B-1 B cell | 4.87e-10 | 1 |
conventional dendritic cell | 4.81e-09 | 8 |
dendritic cell | 1.75e-07 | 10 |
mesenchymal cell | 7.23e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 1.62e-09 | 1 |
caecum | 1.62e-09 | 1 |
midgut | 1.62e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.71e-21 | 10 |
genetic disease | 4.46e-10 | 1 |
monogenic disease | 4.46e-10 | 1 |
xeroderma pigmentosum | 4.46e-10 | 1 |
lymphatic system cancer | 4.87e-10 | 1 |
lymphosarcoma | 4.87e-10 | 1 |
acute leukemia | 1.91e-09 | 1 |
anemia | 2.26e-09 | 1 |
hematologic cancer | 2.77e-07 | 51 |
immune system cancer | 2.77e-07 | 51 |