FFCP PHASE1:Hg19::chr9:89626496..89626506,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:89626496..89626506,+
|short_description=p1@CDC20P1
|description=CAGE_peak_1_at_CDC20P1_5end
|association_with_transcript=-60bp_to_ENST00000488829_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=29487 | |HGNC=29487 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-60bp_to_ENST00000488829_5end | |||
|cluster_id=chr9:89626496..89626506,+ | |||
|coexpression_cluster_id=C2586 | |||
|description=CAGE_peak_1_at_CDC20P1_5end | |||
|id=chr9:89626496..89626506,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.07e-22!254;CL:0000548!4.46e-21!679;CL:0000004!4.46e-21!679;CL:0000255!4.46e-21!679;CL:0000012!1.14e-20!682;CL:0002321!1.98e-16!248;CL:0000220!8.60e-16!246;CL:0000003!1.39e-12!722;CL:0000144!5.41e-11!625;CL:0000076!1.42e-10!62;CL:0000063!1.15e-09!578;CL:0000055!3.93e-09!180;CL:0000333!9.35e-09!41;CL:0000221!7.13e-08!71;CL:0000133!3.34e-07!59;CL:0002371!3.59e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.66e-07;15!CL:1000497;9.53e-07;17!CL:0002518;9.53e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.86e-21,253;CL:0002321,1.17e-13,250;CL:0000076,2.01e-10,63;CL:0000333,5.18e-08,41;CL:1000449,2.18e-07,15;CL:0000221,6.50e-07,72;CL:1000497,7.66e-07,17;CL:0002518,7.66e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!9.23e-30!235;DOID:14566!1.04e-28!239;DOID:2531!1.48e-14!51;DOID:0060083!1.48e-14!51;DOID:0050686!6.73e-14!137;DOID:0050687!1.25e-13!143;DOID:1240!2.13e-11!39;DOID:305!2.46e-10!106;DOID:8692!2.90e-08!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.25e-09;39!DOID:2531;3.22e-09;51!DOID:0060083;3.22e-09;51!DOID:8692;3.17e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.97e-25,235;DOID:14566,2.45e-24,239;DOID:2531,6.59e-15,51;DOID:0060083,6.59e-15,51;DOID:1240,9.74e-12,39;DOID:0050686,3.53e-11,137;DOID:0050687,4.63e-11,143;DOID:8692,2.56e-08,31;DOID:305,2.91e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0000072!4.02e-07!46;UBERON:0000487!7.58e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;1.09e-07;24!UBERON:0011143;1.09e-07;24!UBERON:0006555;2.66e-07;15!UBERON:0004819;2.66e-07;15!UBERON:0001285;2.66e-07;15!UBERON:0007684;2.66e-07;15!UBERON:0000490;4.98e-07;33!UBERON:0000487;6.29e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.18e-07,15;UBERON:0009773,2.18e-07,15;UBERON:0001231,2.18e-07,15;UBERON:0001285,2.18e-07,15;UBERON:0007684,2.18e-07,15;UBERON:0004208,2.18e-07,15;UBERON:0000487,5.01e-07,22 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,5.16041266653169,9.07141518364156,3.49506195408276,1.31883489114227,0.123766352960047,0.994192127183747,0,0,0,0,5.0479633811483,4.89601658986207,2.5076377718247,4.00730381983479,7.52809337900863,4.6450776650077,4.89045796786888,4.8439347775468,3.85682828437028,0,0,0,14.7107395916628,8.433765725791,3.69754010166788,5.11283523829991,2.84338464974843,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,1.84368859342554,0,0,0,0.167186495390678,0,0,0,0.891283655081389,0,0,0,1.79327847615945,0.910415432919148,2.13769275984779,1.93445012450094,2.31842468588042,0,0,0,0.793165398882963,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,2.01210257911091,1.53435074212236,2.89151321907653,0,0.434539556882471,1.5905718941022,0.973269740605272,4.06499713805492,2.66075276955077,3.07421749925941,0.327447688744282,8.37879163072847,11.1235332835329,0,0,0,0,0,0,2.58391129576717,0.860234595106124,5.9013885273291,2.82653970962005,2.51699661725944,3.57653454522088,6.47884396264113,0.258416759169329,0,0,3.22263453687318,1.52054421143703,1.46437234528902,5.14728312484216,1.62028389576352,4.19708722935175,3.81699933464489,6.0810199460994,10.7321646226118,4.74632829784064,4.946447086121,0,0,4.36094052142534,0,1.64619665163954,0,0.573673241497627,3.54668382198357,3.92474320099615,3.20246987189115,0.98667019366864,1.55605517699883,1.75123873690594,2.45192854670188,0.151357427644931,0,7.73260725051529,1.24864030732128,7.98660550162229,0.896692083310806,5.40198693761318,6.151171885989,7.16299114181467,0.816616685019573,5.28187564440602,0.929932030581889,0,0.494533858557114,3.64064544775211,0.718618141816238,4.54507507675979,5.88057043398232,1.38532057742091,1.75591048352335,1.22595118319608,0.600952235626387,2.7223723958405,3.94657198515496,0.213557388818567,0.423863802319124,2.70081986475962,0.92747276314595,0.772921620136887,0.18611685633159,3.20675031258406,1.55899208257918,4.54380793639406,0.0920498986422993,0.161646056818812,1.77504796258307,2.01504196455281,2.54340888465731,1.54608682530637,3.27295344709002,1.43402297694502,4.26907971453584,5.03613119621644,5.57730925773688,3.83545903556871,5.55105871926382,8.39447925874409,1.56449532329816,0.643240938192885,5.52539685409922,0,0,4.37735160147422,2.02301628093722,2.89213235860178,2.97793726377464,3.92182999366331,3.55905928666645,3.10112008768378,2.5508790466295,4.61696588335668,2.95262181849859,5.60967095213783,2.057870056657,1.47008711385542,0,0,0,4.41463099414651,1.8448265781467,0.686271241194102,0.768251997860379,5.62008766288098,5.32803553781643,2.40729957412177,6.51616610620649,6.23960871167747,2.88662684050547,1.27523445472584,0.70445216541493,0.866198686566443,1.85194205030644,0.951270761172991,0.790204397959275,0,0.246217006087397,0,0.445893486866185,0,0,2.1266264586358,3.94057499892532,6.68458058582112,14.568541808278,0.985326475791887,0.44024217006613,0,0,0.25248486685276,1.0159663086747,3.81988425558278,5.86087236050235,8.55362230113526,1.43958489784653,3.00343057843917,0.857479297891735,4.03671903643299,0.87192013766656,5.64704800821315,0.258543431515556,0,6.762422020448,0.26593811658487,0,6.17297698229141,5.67396528093113,6.12771011737029,1.14382394926518,0,6.58592269424615,1.95441710576241,1.42156779497018,12.6712299669349,0,0,0.099972991182057,0,0,0,0.479249710983165,1.14861935834114,4.27910715122155,0.868687840005475,1.43833425785268,1.25342674267927,4.03506518376698,0.197030760201927,0,0,1.52456774533478,0,0.773288812777695,1.50764638800914,0,0,0,0,0.12269149171914,1.00034104211935,0.813795071099207,0,0,0.473107245101804,0.35142424497814,0,0,0,3.98535359121262,2.21243002250044,1.91143951829782,0.783204629850962,0.686286847621712,0,0,0,1.81876542867756,1.66435439510497,1.5119514666484,0,0.306923946576125,0,0,0,0,0,4.31787142647436,3.72879623157567,3.44934055257998,4.67328986265259,3.37010097533882,2.65890789101569,0.200506470303285,0,4.01850568576124,3.82391452814106,0.262248829918848,3.60959690325929,2.00239876471478,10.980896768476,4.38417673959782,1.89992932007176,7.96133688496276,2.55140557914773,4.96606607034921,7.71136263451447,3.79325012561394,2.50844886927427,6.11703055308092,3.3243040357149,8.95499018888713,6.3585364227321,6.53588627562251,3.84675187674584,0.656029291399411,1.30151357865721,0,1.46511143709349,1.81520899825294,1.72279661398852,3.90036147621913,1.6068392984416,0.48335359146061,5.08360436478326,3.37708084397485,3.72158745708233,1.71872391789238,1.59518363305651,4.68746450788555,0.890320356467374,0.165284915360978,1.15314040419064,1.91419068741876,0.30347334256665,0.464845549297286,0.31481234683064,1.3940745403212,0.308033580176089,1.06461206063404,0,0.18532421910392,0.286249773483982,1.86079184679834,0.949138274156178,0.190630193923825,3.32667128704734,0,1.27281299170375,3.13979456079692,0.899362287916574,1.37268514868027,2.94531005864216,0.808729926293264,0,1.68503382495592,6.8268723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| ||
|short_description=p1@CDC20P1 | |||
}} | }} |
Latest revision as of 02:52, 18 September 2015
Short description: | p1@CDC20P1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDC20P1_5end |
Coexpression cluster: | C2586_Alveolar_acute_Renal_Mesenchymal_Bronchial_Trabecular_Corneal |
Association with transcript: | -60bp_to_ENST00000488829_5end |
EntrezGene: | NA |
HGNC: | 29487 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.86e-21 | 253 |
embryonic cell | 1.17e-13 | 250 |
squamous epithelial cell | 2.01e-10 | 63 |
migratory neural crest cell | 5.18e-08 | 41 |
epithelial cell of nephron | 2.18e-07 | 15 |
ectodermal cell | 6.50e-07 | 72 |
kidney cell | 7.66e-07 | 17 |
kidney epithelial cell | 7.66e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 2.18e-07 | 15 |
renal tubule | 2.18e-07 | 15 |
nephron tubule | 2.18e-07 | 15 |
nephron | 2.18e-07 | 15 |
uriniferous tubule | 2.18e-07 | 15 |
nephrogenic mesenchyme | 2.18e-07 | 15 |
simple squamous epithelium | 5.01e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.97e-25 | 235 |
disease of cellular proliferation | 2.45e-24 | 239 |
hematologic cancer | 6.59e-15 | 51 |
immune system cancer | 6.59e-15 | 51 |
leukemia | 9.74e-12 | 39 |
organ system cancer | 3.53e-11 | 137 |
cell type cancer | 4.63e-11 | 143 |
myeloid leukemia | 2.56e-08 | 31 |
carcinoma | 2.91e-08 | 106 |