FFCP PHASE1:Hg19::chrX:107641284..107641300,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:107641284..107641300,-
|short_description=p@chrX:107641284..107641300,-
|description=CAGE_peak_at_chrX:107641284..107641300,-
|association_with_transcript=...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chrX:107641284..107641300,- | |||
|coexpression_cluster_id=C4842 | |||
|description=CAGE_peak_at_chrX:107641284..107641300,- | |||
|id=chrX:107641284..107641300,- | |||
|ontology_enrichment_celltype=CL:0000066!5.37e-23!254;CL:0000076!3.14e-19!62;CL:0002076!1.13e-13!43;CL:0000220!1.20e-10!246;CL:0002321!2.03e-10!248;CL:0000223!6.37e-09!59;CL:0002251!1.39e-08!21;CL:0002368!1.45e-08!13;CL:0000063!5.94e-08!578;CL:0000548!1.16e-07!679;CL:0000004!1.16e-07!679;CL:0000255!1.16e-07!679;CL:0000012!1.76e-07!682;CL:0000213!2.24e-07!57;CL:0000215!2.24e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.42e-16;42!CL:0002536;3.20e-15;2!CL:0000349;2.90e-13;19!CL:0002251;1.48e-12;20!CL:0002368;4.20e-09;13!CL:0002336;1.83e-08;1!CL:0002261;1.83e-08;1!CL:0002252;1.83e-08;1!CL:0002170;1.83e-08;1!CL:0000319;1.83e-08;1!CL:0002327;4.70e-08;4!CL:0002537;8.63e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.01e-18,42;CL:0002536,1.80e-15,2;CL:0000349,1.54e-13,19;CL:0000223,4.97e-13,58;CL:0002251,2.06e-12,20;CL:0000066,1.38e-09,253;CL:0002368,4.22e-09,13;CL:0000319,1.59e-08,1;CL:0002252,2.13e-08,1;CL:0002336,4.07e-08,1;CL:0002261,4.07e-08,1;CL:0002170,4.07e-08,1;CL:0002327,6.03e-08,4;CL:0002537,6.30e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;3.38e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!5.47e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:3030;1.83e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,1.59e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000165!8.07e-11!28;UBERON:0000930!8.07e-11!28;UBERON:0005631!7.34e-10!14;UBERON:0000158!7.34e-10!14;UBERON:0000161!8.07e-09!35;UBERON:0004119!9.06e-09!169;UBERON:0000925!9.06e-09!169;UBERON:0006595!9.06e-09!169;UBERON:0000166!1.59e-08!21;UBERON:0001004!4.25e-08!72;UBERON:0001444!9.66e-08!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.47e-18;10!UBERON:0000158;4.47e-18;10!UBERON:0000305;9.49e-17;7!UBERON:0000478;2.15e-10;24!UBERON:0003729;4.48e-09;13!UBERON:0000165;8.04e-09;28!UBERON:0003343;2.95e-08;4!UBERON:0004785;2.95e-08;4!UBERON:0001911;4.70e-08;4!UBERON:0004923;2.10e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.49e-18,14;UBERON:0000158,1.49e-18,14;UBERON:0000305,4.39e-17,7;UBERON:0004871,5.66e-15,8;UBERON:0000478,1.31e-10,24;UBERON:0004923,2.51e-09,66;UBERON:0003729,6.18e-09,13;UBERON:0000165,1.84e-08,29;UBERON:0000930,1.84e-08,29;UBERON:0003343,4.08e-08,4;UBERON:0004785,4.08e-08,4;UBERON:0001911,6.03e-08,4;UBERON:0005333,6.03e-08,4;UBERON:0008425,6.03e-08,4;UBERON:0005311,6.03e-08,4;UBERON:0000161,9.26e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,1.74753097704138,1.31883489114227,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.164201178899891,0.629686250509434,0,0,0,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.364295288292542,0,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,1.13061588384802,1.67799774483962,0.825354125820202,0.835979866147242,0.775250277507987,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0.225222960966644,0,0,0.916008719652036,0,0,1.3082821564276,0,0,0.529636723252875,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0.468642863667593,0,0,0.149448680551801,0.117434498643765,0,0,0.408308342509787,0.491337269247072,0.723280468230358,0,0,0,0,1.68336113954066,0.375355559615893,0.554128230968366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,1.63647672354501,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220587945464788,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,0,0.201057944823262,1.01847289674383,0.651616610620649,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0.503946384596579,0.283550194484773,1.25381931783988,0.581267877027924,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0.289562613335158,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.946214490203608,0.117141414992713,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0.303127571446259,0,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,1.60405176242628,0.736647911487171,0,0,0,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0.15350367472613,0,0,0,0.340906509664404,0,1.65284915360978,0.384380134730212,10.5918551370505,0.910420027699949,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0.636406495851874,0.78494864019923,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0.143411352204052,0,0,0,0,0,1.13841952129715,0,0.865999014529609,1.34060455107157,0,0,0.86101074534246,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66866030566487,0,1.90995587790152,0.296964680832639,5.83605333988541,0,0,0.111308705022906,0,0,0,0,0,0.102268682502155,0,0,0.179736702294654,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,2.55200927785536,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.300646838828985,0,1.32930774541437,0.992975867626496,0.627865836814451,0,0,0,0,0,0.870592065804026,0,0,0.19351266257817,0,0.246346371159628,0,0,0,0.137041924646751,0,0,0.586654148204409,0,0,0,0,0,0,0.432164393964449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0.542999601753713,0.864221491201268,0.326587360109409,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0.150257608997218,0,0,0,0.322231671127465,0,0,0,0,0,0,0.385239660814607,0,1.04397716786085,0,0.463044948647668,0.244736704506468,0.71635536432595,0,0,0.353378291891762,0.578742114812744,0.337884881306145,0,0,0.303859956177382,0,0,0,0,0,1.47463745252232,0.211312123358627,0.59996218756479,0,0,0.567515953566836,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35554524402461,0,1.10057159113007,0.462102664601353,0,0,0,0,0,0,0,0.818859587550484,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,1.55723962648897,0,0,0,0,0,0,0,0,0,0,0,0.828864656652147,2.7314956335032,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0.561689566824178,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569822880276821,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,1.74753097704138,1.31883489114227,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.164201178899891,0.629686250509434,0,0,0,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0.364295288292542,0,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,1.13061588384802,1.67799774483962,0.825354125820202,0.835979866147242,0.775250277507987,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0,0.225222960966644,0,0,0.916008719652036,0,0,1.3082821564276,0,0,0.529636723252875,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0.468642863667593,0,0,0.149448680551801,0.117434498643765,0,0,0.408308342509787,0.491337269247072,0.723280468230358,0,0,0,0,1.68336113954066,0.375355559615893,0.554128230968366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,1.63647672354501,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220587945464788,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,0,0.201057944823262,1.01847289674383,0.651616610620649,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0.503946384596579,0.283550194484773,1.25381931783988,0.581267877027924,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0.289562613335158,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.946214490203608,0.117141414992713,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0.303127571446259,0,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,1.60405176242628,0.736647911487171,0,0,0,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0.15350367472613,0,0,0,0.340906509664404,0,1.65284915360978,0.384380134730212,10.5918551370505,0.910420027699949,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0.636406495851874,0.78494864019923,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0.143411352204052,0,0,0,0,0,1.13841952129715,0,0.865999014529609,1.34060455107157,0,0,0.86101074534246,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66866030566487,0,1.90995587790152,0.296964680832639,5.83605333988541,0,0,0.111308705022906,0,0,0,0,0,0.102268682502155,0,0,0.179736702294654,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,2.55200927785536,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.300646838828985,0,1.32930774541437,0.992975867626496,0.627865836814451,0,0,0,0,0,0.870592065804026,0,0,0.19351266257817,0,0.246346371159628,0,0,0,0.137041924646751,0,0,0.586654148204409,0,0,0,0,0,0,0.432164393964449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0.542999601753713,0.864221491201268,0.326587360109409,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0.37494122388632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0.150257608997218,0,0,0,0.322231671127465,0,0,0,0,0,0,0.385239660814607,0,1.04397716786085,0,0.463044948647668,0.244736704506468,0.71635536432595,0,0,0.353378291891762,0.578742114812744,0.337884881306145,0,0,0.303859956177382,0,0,0,0,0,1.47463745252232,0.211312123358627,0.59996218756479,0,0,0.567515953566836,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35554524402461,0,1.10057159113007,0.462102664601353,0,0,0,0,0,0,0,0.818859587550484,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,1.55723962648897,0,0,0,0,0,0,0,0,0,0,0,0.828864656652147,2.7314956335032,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0.561689566824178,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569822880276821,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chrX:107641284..107641300,- | |||
}} | }} |
Latest revision as of 04:55, 1 August 2015
Short description: | p@chrX:107641284..107641300, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chrX:107641284..107641300, - |
Coexpression cluster: | C4842_Small_amniotic_salivary_oral_Gingival_Amniotic_chorionic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.01e-18 | 42 |
amniotic epithelial cell | 1.80e-15 | 2 |
extraembryonic cell | 1.54e-13 | 19 |
endodermal cell | 4.97e-13 | 58 |
epithelial cell of alimentary canal | 2.06e-12 | 20 |
epithelial cell | 1.38e-09 | 253 |
respiratory epithelial cell | 4.22e-09 | 13 |
mucus secreting cell | 1.59e-08 | 1 |
epithelial cell of esophagus | 2.13e-08 | 1 |
buccal mucosa cell | 4.07e-08 | 1 |
endothelial cell of viscerocranial mucosa | 4.07e-08 | 1 |
keratinized cell of the oral mucosa | 4.07e-08 | 1 |
mammary gland epithelial cell | 6.03e-08 | 4 |
amnion mesenchymal stem cell | 6.30e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.49e-18 | 14 |
membranous layer | 1.49e-18 | 14 |
amnion | 4.39e-17 | 7 |
somatic layer of lateral plate mesoderm | 5.66e-15 | 8 |
extraembryonic structure | 1.31e-10 | 24 |
organ component layer | 2.51e-09 | 66 |
mouth mucosa | 6.18e-09 | 13 |
mouth | 1.84e-08 | 29 |
stomodeum | 1.84e-08 | 29 |
mucosa of oral region | 4.08e-08 | 4 |
respiratory system mucosa | 4.08e-08 | 4 |
mammary gland | 6.03e-08 | 4 |
mammary bud | 6.03e-08 | 4 |
mammary ridge | 6.03e-08 | 4 |
mammary placode | 6.03e-08 | 4 |
orifice | 9.26e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 1.59e-08 | 1 |