FFCP PHASE1:Hg19::chr5:102143765..102143784,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5066 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8596 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000509523_5end | |||
|cluster_id=chr5:102143765..102143784,+ | |||
|coexpression_cluster_id=C94 | |||
|description=CAGE_peak_22_at_PAM_5end | |||
|id=chr5:102143765..102143784,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002553;1.30e-19;1!CL:0000167;1.88e-19;1!CL:0000164;1.88e-19;1!CL:0000502;1.88e-19;1!CL:0000172;1.88e-19;1!CL:0000173;1.88e-19;1!CL:0002253;2.85e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,1.30e-19,1;CL:0000167,1.88e-19,1;CL:0000164,1.88e-19,1;CL:0000502,1.88e-19,1;CL:0000172,1.88e-19,1;CL:0000173,1.88e-19,1;CL:0002351,1.88e-19,1;CL:0002253,2.99e-10,2 | |||
|ontology_enrichment_development_v019=CL:0002351;1.88e-19;1!UBERON:0006215;2.88e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4430;1.88e-19;1!DOID:3119;2.95e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,1.88e-19,1;DOID:3119,3.19e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0002780!1.69e-42!41;UBERON:0001890!1.69e-42!41;UBERON:0006240!1.69e-42!41;UBERON:0003080!2.37e-41!42;UBERON:0001049!2.09e-40!57;UBERON:0005068!2.09e-40!57;UBERON:0006241!2.09e-40!57;UBERON:0007135!2.09e-40!57;UBERON:0001893!1.07e-39!34;UBERON:0002616!8.48e-39!59;UBERON:0001869!9.95e-39!32;UBERON:0002619!1.60e-37!22;UBERON:0002791!4.41e-37!33;UBERON:0000955!1.56e-36!69;UBERON:0006238!1.56e-36!69;UBERON:0002020!3.64e-36!34;UBERON:0003528!3.64e-36!34;UBERON:0000956!1.13e-32!25;UBERON:0000203!1.13e-32!25;UBERON:0001950!5.20e-32!20;UBERON:0001017!8.68e-32!82;UBERON:0005743!5.86e-30!86;UBERON:0003075!1.91e-28!86;UBERON:0007284!1.91e-28!86;UBERON:0002346!7.80e-27!90;UBERON:0003056!1.31e-26!61;UBERON:0000073!2.13e-26!94;UBERON:0001016!2.13e-26!94;UBERON:0007023!9.53e-26!115;UBERON:0000033!9.91e-19!123;UBERON:0000153!1.69e-17!129;UBERON:0007811!1.69e-17!129;UBERON:0000349!8.39e-17!5;UBERON:0001871!9.79e-15!7;UBERON:0000200!8.56e-14!6;UBERON:0000025!8.62e-13!194;UBERON:0004121!2.15e-12!169;UBERON:0000924!6.27e-12!173;UBERON:0006601!6.27e-12!173;UBERON:0000483!7.50e-10!309;UBERON:0000119!1.16e-09!312;UBERON:0002420!6.08e-09!9;UBERON:0007245!6.08e-09!9;UBERON:0010009!6.08e-09!9;UBERON:0010011!6.08e-09!9;UBERON:0000454!6.08e-09!9;UBERON:0000064!8.04e-09!219;UBERON:0004111!1.19e-08!241;UBERON:0003296!3.24e-08!4;UBERON:0010133!3.24e-08!4;UBERON:0001870!4.07e-08!2;UBERON:0001876!7.26e-08!2;UBERON:0000007!9.19e-08!2;UBERON:0000369!9.34e-08!4;UBERON:0002435!9.34e-08!4;UBERON:0000204!9.34e-08!4;UBERON:0010082!9.34e-08!4;UBERON:0001954!1.28e-07!2;UBERON:0003022!1.28e-07!2;UBERON:0002421!1.28e-07!2;UBERON:0002600!1.28e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0003112;3.56e-19;1!UBERON:0011158;3.56e-19;1!UBERON:0003128;3.56e-19;1!UBERON:0001703;3.56e-19;1!UBERON:0002241;3.56e-19;1!UBERON:0000349;2.09e-15;5!UBERON:0001876;1.89e-10;2!UBERON:0001954;2.85e-10;2!UBERON:0002702;2.85e-10;2!UBERON:0003022;2.85e-10;2!UBERON:0002421;2.85e-10;2!UBERON:0002600;2.85e-10;2!UBERON:0002619;1.16e-07;22!UBERON:0001870;2.88e-07;3!UBERON:0000956;7.72e-07;25!UBERON:0000203;7.72e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003112,5.62e-19,1;UBERON:0011158,5.62e-19,1;UBERON:0003128,5.62e-19,1;UBERON:0001703,5.62e-19,1;UBERON:0002241,5.62e-19,1;UBERON:0004761,5.62e-19,1;UBERON:0009617,5.62e-19,1;UBERON:0000349,1.88e-15,5;UBERON:0001876,1.89e-10,2;UBERON:0002702,2.27e-10,2;UBERON:0001954,2.49e-10,2;UBERON:0003022,2.49e-10,2;UBERON:0002421,2.49e-10,2;UBERON:0002600,2.49e-10,2;UBERON:0005253,3.58e-10,2;UBERON:0002619,1.06e-07,22;UBERON:0001870,2.47e-07,3;UBERON:0000956,7.12e-07,25;UBERON:0000203,7.12e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,4.97073823883149,0.281338832821026,0,0,0,0.19924798825107,0,0.755798243562828,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0.583209226766509,0.347249989866585,0,0.120596438625408,1.52581736317083,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51472047819464,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633107959558787,0,0,0.213452994739353,0,0,0,1.37275998289572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,1.59045937961861,0.136203406111576,0,0,0,0,0,0.485996453264197,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77213635993397,0.488105059607853,0.1251909307065,0,0.665574309221114,0.248385611765534,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.80627823114017,0,0,0.513833800771676,0,0,0.205116364240755,0.252071696221718,0.0691572524642179,1.29180516505481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0,0,0.380494861163441,0.546974809018219,0,0,0,0,0.535701835878287,0,0.606965604236632,0.455324382702595,0,0,0,0,0.394636641377094,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0.233939463462106,0.397901550322736,0,0,0.109940516745429,17.2097641666008,0,0,41.8582393761755,0,2.35676547101626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.951880862672806,0,0.5290268405154,0,0,0,0,0,0.633492505057185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p22@PAM | |||
}} |
Latest revision as of 12:52, 19 September 2015
Short description: | p22@PAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_PAM_5end |
Coexpression cluster: | C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |
Association with transcript: | 0bp_to_ENST00000509523_5end |
EntrezGene: | PAM |
HGNC: | 8596 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 1.30e-19 | 1 |
peptide hormone secreting cell | 1.88e-19 | 1 |
enteroendocrine cell | 1.88e-19 | 1 |
type D enteroendocrine cell | 1.88e-19 | 1 |
somatostatin secreting cell | 1.88e-19 | 1 |
pancreatic D cell | 1.88e-19 | 1 |
progenitor cell of endocrine pancreas | 1.88e-19 | 1 |
epithelial cell of large intestine | 2.99e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
olfactory region | 5.62e-19 | 1 |
primary subdivision of skull | 5.62e-19 | 1 |
cranium | 5.62e-19 | 1 |
neurocranium | 5.62e-19 | 1 |
chondrocranium | 5.62e-19 | 1 |
cartilaginous neurocranium | 5.62e-19 | 1 |
head paraxial mesoderm | 5.62e-19 | 1 |
limbic system | 1.88e-15 | 5 |
amygdala | 1.89e-10 | 2 |
middle frontal gyrus | 2.27e-10 | 2 |
Ammon's horn | 2.49e-10 | 2 |
lobe parts of cerebral cortex | 2.49e-10 | 2 |
hippocampal formation | 2.49e-10 | 2 |
limbic lobe | 2.49e-10 | 2 |
head mesenchyme | 3.58e-10 | 2 |
regional part of cerebral cortex | 1.06e-07 | 22 |
frontal cortex | 2.47e-07 | 3 |
cerebral cortex | 7.12e-07 | 25 |
pallium | 7.12e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 1.88e-19 | 1 |
gastrointestinal system cancer | 3.19e-12 | 14 |