FFCP PHASE1:Mm9::chr2:163372869..163372882,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=15378|HGNC=|MCL_coexpression_id=810|UniProt=P49698|association_with_transcript=-40bp_to_ENSMUST00000109411_5end|description=CAGE_peak_3_at_Hnf4a_5end|id=chr2:163372869..163372882,+|ontology_enrichment_celltype=CL:0002563!3.51e-08!9;CL:0002251!3.51e-08!9|ontology_enrichment_celltype_v019_2=CL:0002563,6.65e-11,9;CL:0002251,6.65e-11,9;CL:0000066,2.63e-10,25;CL:0000223,9.60e-09,20;CL:0000239,1.69e-08,6;CL:0000677,1.69e-08,6;CL:0000584,1.69e-08,6;CL:0000075,4.21e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0009854!6.76e-16!23;UBERON:0009856!6.76e-16!23;UBERON:0000160!8.75e-16!43;UBERON:0002107!2.29e-15!22;UBERON:0007499!2.29e-15!22;UBERON:0006925!2.29e-15!22;UBERON:0009497!2.29e-15!22;UBERON:0000015!2.29e-15!22;UBERON:0002423!2.29e-15!22;UBERON:0006235!2.29e-15!22;UBERON:0008835!2.29e-15!22;UBERON:0003894!2.29e-15!22;UBERON:0004161!2.29e-15!22;UBERON:0008836!2.29e-15!22;UBERON:0005409!1.33e-13!59;UBERON:0000344!1.41e-12!15;UBERON:0002365!1.78e-12!25;UBERON:0002330!1.78e-12!25;UBERON:0004119!1.82e-12!130;UBERON:0000925!1.82e-12!130;UBERON:0006595!1.82e-12!130;UBERON:0005172!6.29e-12!49;UBERON:0005173!6.29e-12!49;UBERON:0002417!6.29e-12!49;UBERON:0000916!6.29e-12!49;UBERON:0001007!6.90e-12!128;UBERON:0001555!6.90e-12!128;UBERON:0007026!6.90e-12!128;UBERON:0001242!3.84e-11!13;UBERON:0000060!3.84e-11!13;UBERON:0001262!3.84e-11!13;UBERON:0004786!3.84e-11!13;UBERON:0004921!7.18e-11!126;UBERON:0004185!7.18e-11!126;UBERON:0004923!2.78e-08!24;UBERON:0003350!3.51e-08!9;UBERON:0004808!3.51e-08!9;UBERON:0001277!3.51e-08!9;UBERON:0003929!1.65e-07!55;UBERON:0009569!8.36e-07!66|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.30e-28,31;UBERON:0009854,4.41e-22,23;UBERON:0009856,4.41e-22,23;UBERON:0002107,2.47e-21,22;UBERON:0007499,2.47e-21,22;UBERON:0006925,2.47e-21,22;UBERON:0009497,2.47e-21,22;UBERON:0000015,2.47e-21,22;UBERON:0002423,2.47e-21,22;UBERON:0006235,2.47e-21,22;UBERON:0008835,2.47e-21,22;UBERON:0003894,2.47e-21,22;UBERON:0004161,2.47e-21,22;UBERON:0008836,2.47e-21,22;UBERON:0001007,1.03e-19,116;UBERON:0001555,1.03e-19,116;UBERON:0007026,1.03e-19,116;UBERON:0005409,4.01e-19,47;UBERON:0004119,4.18e-19,118;UBERON:0000925,4.18e-19,118;UBERON:0006595,4.18e-19,118;UBERON:0004921,4.15e-18,114;UBERON:0002365,6.07e-18,25;UBERON:0002330,6.07e-18,25;UBERON:0000344,4.22e-17,15;UBERON:0001242,4.47e-15,13;UBERON:0001262,4.47e-15,13;UBERON:0004786,4.47e-15,13;UBERON:0005172,1.44e-13,49;UBERON:0005173,1.44e-13,49;UBERON:0002417,1.44e-13,49;UBERON:0000916,1.44e-13,49;UBERON:0003929,2.05e-13,55;UBERON:0003350,6.65e-11,9;UBERON:0004808,6.65e-11,9;UBERON:0001277,6.65e-11,9;UBERON:0004923,3.62e-10,24;UBERON:0000490,1.09e-09,66;UBERON:0003104,2.97e-09,61;UBERON:0009142,2.97e-09,61;UBERON:0005911,6.78e-09,69;UBERON:0000485,1.72e-08,11;UBERON:0009569,5.91e-08,66;UBERON:0005256,3.53e-07,45|phase1_expression=0,36.2934423944936,26.8449551239826,15.4256747766483,13.5241847085514,8.39396359559449,6.30754129607919,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,10.0795226359846,7.11168771308227,14.9300310669905,7.32295393470427,13.1437451938392,8.93110071444957,11.8454160987167,6.87364583031445,0,0,0,7.22129049378186,4.98703936075477,4.90006455029686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.74381489283248,10.879541339324,20.5087212822371,9.74664626171504,12.9927797258227,3.7919993435573,0,0,0,0,0,0,0,0,0,0,10.9616524530298,0,0,0,0.304465478312141,0.230615497256059,0.301445281105245,0.117588707135705,0,2.47194967734374,0.144599356919912,0,0,0,0,3.72783522436244,0,0,9.96282515313506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.452114453507145,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5734010554815,15.3381328664856,0,0.464473343720877,2.83508414908605,6.45387278794696,4.66993892074228,6.46767128782701,9.96511029243474,5.76446341534038,7.54005626400809,8.75408476981064,8.18849165900304,14.3811105384675,9.07779809473716,6.96994456390285,0.948339504765408,0.913988100877831,3.38123207019241,2.24016460629846,3.10323979468201,2.24434623649019,4.23684798732524,7.97094799089852,7.06494275286187,8.26760998276064,28.4594522003663,1.66845105716094,2.16214894624523,3.59779379815766,3.24576194221605,4.58236603529592,4.32863948028414,7.19240343627027,17.5106044917038,6.86403532970204,5.75072826109418,12.6527922207291,18.4102227137591,21.7217835034516,15.0693827358406,22.6748455040783,0,0,0.162964976442026,0,0,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0,0,0.485561272309963,0.906970670894253,0,0,0,3.35956781118687,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0.704015124191131,0.42366414172764,0,0,0,0,0,0,11.659233465194,0,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,1.18805874903981,0.209088296014469,1.09181281873089,0.404593039154462,0.41326727862668,0,6.35113369129785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0,0.486213434136588,0.419226325255965,1.10306105070008,0.44449345560323,0.412070114477788,0.64183841918363,0.758091635291392,0.50695859978048,0.377252682772152,0.749132059759059,0.640251524048693,0.689225627467359,1.42888107384922,0.579421629724277,0.192909220463705,0.412085900803307,1.61918812147837,0.685738504770831,0.70990322463735,0.715308569841963,0.436039249896986,1.2234219453993,1.09998990259179,1.28049581010941,0.789209134313529,0.950628796921032,1.68342681497322,1.06771516311757,0.689531376628944,1.22769312950907,0.77468420592983,0.578719832943424,0,0.701794825336225,1.71896843238639,0,0,0|short_description=p3@Hnf4a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=15378 | |||
|HGNC= | |||
|MCL_coexpression_id=810 | |||
|TSSclassifier=NA | |||
|UniProt=P49698 | |||
|association_with_transcript=-40bp_to_ENSMUST00000109411_5end | |||
|cluster_id=chr2:163372869..163372882,+ | |||
|description=CAGE_peak_3_at_Hnf4a_5end | |||
|id=chr2:163372869..163372882,+ | |||
|ontology_enrichment_celltype=CL:0002563!3.51e-08!9;CL:0002251!3.51e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,6.65e-11,9;CL:0002251,6.65e-11,9;CL:0000066,2.63e-10,25;CL:0000223,9.60e-09,20;CL:0000239,1.69e-08,6;CL:0000677,1.69e-08,6;CL:0000584,1.69e-08,6;CL:0000075,4.21e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009854!6.76e-16!23;UBERON:0009856!6.76e-16!23;UBERON:0000160!8.75e-16!43;UBERON:0002107!2.29e-15!22;UBERON:0007499!2.29e-15!22;UBERON:0006925!2.29e-15!22;UBERON:0009497!2.29e-15!22;UBERON:0000015!2.29e-15!22;UBERON:0002423!2.29e-15!22;UBERON:0006235!2.29e-15!22;UBERON:0008835!2.29e-15!22;UBERON:0003894!2.29e-15!22;UBERON:0004161!2.29e-15!22;UBERON:0008836!2.29e-15!22;UBERON:0005409!1.33e-13!59;UBERON:0000344!1.41e-12!15;UBERON:0002365!1.78e-12!25;UBERON:0002330!1.78e-12!25;UBERON:0004119!1.82e-12!130;UBERON:0000925!1.82e-12!130;UBERON:0006595!1.82e-12!130;UBERON:0005172!6.29e-12!49;UBERON:0005173!6.29e-12!49;UBERON:0002417!6.29e-12!49;UBERON:0000916!6.29e-12!49;UBERON:0001007!6.90e-12!128;UBERON:0001555!6.90e-12!128;UBERON:0007026!6.90e-12!128;UBERON:0001242!3.84e-11!13;UBERON:0000060!3.84e-11!13;UBERON:0001262!3.84e-11!13;UBERON:0004786!3.84e-11!13;UBERON:0004921!7.18e-11!126;UBERON:0004185!7.18e-11!126;UBERON:0004923!2.78e-08!24;UBERON:0003350!3.51e-08!9;UBERON:0004808!3.51e-08!9;UBERON:0001277!3.51e-08!9;UBERON:0003929!1.65e-07!55;UBERON:0009569!8.36e-07!66 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.30e-28,31;UBERON:0009854,4.41e-22,23;UBERON:0009856,4.41e-22,23;UBERON:0002107,2.47e-21,22;UBERON:0007499,2.47e-21,22;UBERON:0006925,2.47e-21,22;UBERON:0009497,2.47e-21,22;UBERON:0000015,2.47e-21,22;UBERON:0002423,2.47e-21,22;UBERON:0006235,2.47e-21,22;UBERON:0008835,2.47e-21,22;UBERON:0003894,2.47e-21,22;UBERON:0004161,2.47e-21,22;UBERON:0008836,2.47e-21,22;UBERON:0001007,1.03e-19,116;UBERON:0001555,1.03e-19,116;UBERON:0007026,1.03e-19,116;UBERON:0005409,4.01e-19,47;UBERON:0004119,4.18e-19,118;UBERON:0000925,4.18e-19,118;UBERON:0006595,4.18e-19,118;UBERON:0004921,4.15e-18,114;UBERON:0002365,6.07e-18,25;UBERON:0002330,6.07e-18,25;UBERON:0000344,4.22e-17,15;UBERON:0001242,4.47e-15,13;UBERON:0001262,4.47e-15,13;UBERON:0004786,4.47e-15,13;UBERON:0005172,1.44e-13,49;UBERON:0005173,1.44e-13,49;UBERON:0002417,1.44e-13,49;UBERON:0000916,1.44e-13,49;UBERON:0003929,2.05e-13,55;UBERON:0003350,6.65e-11,9;UBERON:0004808,6.65e-11,9;UBERON:0001277,6.65e-11,9;UBERON:0004923,3.62e-10,24;UBERON:0000490,1.09e-09,66;UBERON:0003104,2.97e-09,61;UBERON:0009142,2.97e-09,61;UBERON:0005911,6.78e-09,69;UBERON:0000485,1.72e-08,11;UBERON:0009569,5.91e-08,66;UBERON:0005256,3.53e-07,45 | |||
|phase1_expression=0,36.2934423944936,26.8449551239826,15.4256747766483,13.5241847085514,8.39396359559449,6.30754129607919,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,10.0795226359846,7.11168771308227,14.9300310669905,7.32295393470427,13.1437451938392,8.93110071444957,11.8454160987167,6.87364583031445,0,0,0,7.22129049378186,4.98703936075477,4.90006455029686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.74381489283248,10.879541339324,20.5087212822371,9.74664626171504,12.9927797258227,3.7919993435573,0,0,0,0,0,0,0,0,0,0,10.9616524530298,0,0,0,0.304465478312141,0.230615497256059,0.301445281105245,0.117588707135705,0,2.47194967734374,0.144599356919912,0,0,0,0,3.72783522436244,0,0,9.96282515313506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.452114453507145,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5734010554815,15.3381328664856,0,0.464473343720877,2.83508414908605,6.45387278794696,4.66993892074228,6.46767128782701,9.96511029243474,5.76446341534038,7.54005626400809,8.75408476981064,8.18849165900304,14.3811105384675,9.07779809473716,6.96994456390285,0.948339504765408,0.913988100877831,3.38123207019241,2.24016460629846,3.10323979468201,2.24434623649019,4.23684798732524,7.97094799089852,7.06494275286187,8.26760998276064,28.4594522003663,1.66845105716094,2.16214894624523,3.59779379815766,3.24576194221605,4.58236603529592,4.32863948028414,7.19240343627027,17.5106044917038,6.86403532970204,5.75072826109418,12.6527922207291,18.4102227137591,21.7217835034516,15.0693827358406,22.6748455040783,0,0,0.162964976442026,0,0,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0,0,0.485561272309963,0.906970670894253,0,0,0,3.35956781118687,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0.704015124191131,0.42366414172764,0,0,0,0,0,0,11.659233465194,0,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,1.18805874903981,0.209088296014469,1.09181281873089,0.404593039154462,0.41326727862668,0,6.35113369129785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0,0.486213434136588,0.419226325255965,1.10306105070008,0.44449345560323,0.412070114477788,0.64183841918363,0.758091635291392,0.50695859978048,0.377252682772152,0.749132059759059,0.640251524048693,0.689225627467359,1.42888107384922,0.579421629724277,0.192909220463705,0.412085900803307,1.61918812147837,0.685738504770831,0.70990322463735,0.715308569841963,0.436039249896986,1.2234219453993,1.09998990259179,1.28049581010941,0.789209134313529,0.950628796921032,1.68342681497322,1.06771516311757,0.689531376628944,1.22769312950907,0.77468420592983,0.578719832943424,0,0.701794825336225,1.71896843238639,0,0,0 | |||
|short_description=p3@Hnf4a | |||
}} |
Latest revision as of 02:06, 26 September 2015
Short description: | p3@Hnf4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Hnf4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:810 |
Association with transcript: | -40bp_to_ENSMUST00000109411_5end |
EntrezGene: | Hnf4a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 6.65e-11 | 9 |
epithelial cell of alimentary canal | 6.65e-11 | 9 |
epithelial cell | 2.63e-10 | 25 |
endodermal cell | 9.60e-09 | 20 |
brush border epithelial cell | 1.69e-08 | 6 |
gut absorptive cell | 1.69e-08 | 6 |
enterocyte | 1.69e-08 | 6 |
columnar/cuboidal epithelial cell | 4.21e-07 | 7 |