FFCP PHASE1:Mm9::chr5:148118809..148118832,-: Difference between revisions
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{{FFCP|EntrezGene=12591|HGNC=|MCL_coexpression_id=412|UniProt=P43241,Q543L9|association_with_transcript=0bp_to_NM_007673,uc009anz.1_5end|description=CAGE_peak_5_at_Cdx2_5end|id=chr5:148118809..148118832,-|ontology_enrichment_celltype=CL:0002563!5.02e-12!9;CL:0002251!5.02e-12!9;CL:0000239!4.05e-08!6;CL:0000677!4.05e-08!6;CL:0000212!4.05e-08!6;CL:0000584!4.05e-08!6;CL:0000075!8.70e-07!7|ontology_enrichment_celltype_v019_2=CL:0002563,3.80e-20,9;CL:0002251,3.80e-20,9;CL:0000239,3.28e-13,6;CL:0000677,3.28e-13,6;CL:0000584,3.28e-13,6;CL:0002076,2.25e-11,15;CL:0000075,3.18e-11,7;CL:0000066,3.64e-11,25;CL:0002250,1.51e-08,3;CL:0000223,4.27e-08,20;CL:0000682,1.46e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!3.80e-26!43;UBERON:0005409!1.48e-22!59;UBERON:0000344!4.42e-19!15;UBERON:0001242!6.02e-17!13;UBERON:0000060!6.02e-17!13;UBERON:0001262!6.02e-17!13;UBERON:0004786!6.02e-17!13;UBERON:0003350!5.02e-12!9;UBERON:0004808!5.02e-12!9;UBERON:0001277!5.02e-12!9;UBERON:0004923!2.08e-11!24;UBERON:0000485!2.25e-09!11|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.02e-67,31;UBERON:0005409,4.36e-45,47;UBERON:0000344,1.00e-32,15;UBERON:0001242,6.46e-29,13;UBERON:0001262,6.46e-29,13;UBERON:0004786,6.46e-29,13;UBERON:0003350,3.80e-20,9;UBERON:0004808,3.80e-20,9;UBERON:0001277,3.80e-20,9;UBERON:0004923,4.46e-19,24;UBERON:0001007,2.18e-16,116;UBERON:0001555,2.18e-16,116;UBERON:0007026,2.18e-16,116;UBERON:0000485,3.70e-16,11;UBERON:0004119,5.55e-16,118;UBERON:0000925,5.55e-16,118;UBERON:0006595,5.55e-16,118;UBERON:0004921,2.43e-14,114;UBERON:0002108,8.31e-11,4;UBERON:0000331,1.21e-08,3;UBERON:0002116,1.21e-08,3;UBERON:0001204,1.21e-08,3;UBERON:0001168,1.21e-08,3|phase1_expression=0,9.77131141390211,5.45999087267443,5.74682001482977,3.50627010962443,8.2260843236826,5.84031601488814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7997726838022,6.19405058881359,7.46501553349526,5.1691439539089,8.40337807474967,15.771943814879,13.8616571367962,9.5344119581781,0,0,0,10.3986583110459,13.6312409193964,11.4334839506927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.842666520790511,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9113408974498,0,0,8.9409969323007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64335026387038,7.93351699990633,3.19932375802851,5.34144345279009,7.08771037271513,5.64713868945359,6.67134131534611,7.60902504450237,11.3886974770683,6.25856027951241,3.77002813200404,4.37704238490532,5.65395852645448,7.19055526923377,5.83572734661674,3.98282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42366414172764,0,0,0,0,0,0,8.74442509889552,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.432021363287205,0.209088296014469,0.655087691238533,0,0,0,13.0911123024711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07656627931371,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0.243106717068294,0.628839487883947,0.735374033800057,0.44449345560323,0.206035057238894,0.320919209591815,0.505394423527595,0.760437899670719,0,0.187283014939765,0.384150914429216,0.746661096422973,0.476293691283074,0.115884325944855,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0,0.715308569841963,0.581385666529314,0.376437521661322,0.423073039458382,0.182927972872773,0.263069711437843,0.407412341537585,0,0.237270036248348,0.0985044823755635,0.409231043169689,0.619747364743864,0.578719832943424,0,1.40358965067245,0.644613162144895,0,0,0|short_description=p5@Cdx2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12591 | |||
|HGNC= | |||
|MCL_coexpression_id=412 | |||
|TSSclassifier=NA | |||
|UniProt=P43241,Q543L9 | |||
|association_with_transcript=0bp_to_NM_007673,uc009anz.1_5end | |||
|cluster_id=chr5:148118809..148118832,- | |||
|description=CAGE_peak_5_at_Cdx2_5end | |||
|id=chr5:148118809..148118832,- | |||
|ontology_enrichment_celltype=CL:0002563!5.02e-12!9;CL:0002251!5.02e-12!9;CL:0000239!4.05e-08!6;CL:0000677!4.05e-08!6;CL:0000212!4.05e-08!6;CL:0000584!4.05e-08!6;CL:0000075!8.70e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.80e-20,9;CL:0002251,3.80e-20,9;CL:0000239,3.28e-13,6;CL:0000677,3.28e-13,6;CL:0000584,3.28e-13,6;CL:0002076,2.25e-11,15;CL:0000075,3.18e-11,7;CL:0000066,3.64e-11,25;CL:0002250,1.51e-08,3;CL:0000223,4.27e-08,20;CL:0000682,1.46e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.80e-26!43;UBERON:0005409!1.48e-22!59;UBERON:0000344!4.42e-19!15;UBERON:0001242!6.02e-17!13;UBERON:0000060!6.02e-17!13;UBERON:0001262!6.02e-17!13;UBERON:0004786!6.02e-17!13;UBERON:0003350!5.02e-12!9;UBERON:0004808!5.02e-12!9;UBERON:0001277!5.02e-12!9;UBERON:0004923!2.08e-11!24;UBERON:0000485!2.25e-09!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.02e-67,31;UBERON:0005409,4.36e-45,47;UBERON:0000344,1.00e-32,15;UBERON:0001242,6.46e-29,13;UBERON:0001262,6.46e-29,13;UBERON:0004786,6.46e-29,13;UBERON:0003350,3.80e-20,9;UBERON:0004808,3.80e-20,9;UBERON:0001277,3.80e-20,9;UBERON:0004923,4.46e-19,24;UBERON:0001007,2.18e-16,116;UBERON:0001555,2.18e-16,116;UBERON:0007026,2.18e-16,116;UBERON:0000485,3.70e-16,11;UBERON:0004119,5.55e-16,118;UBERON:0000925,5.55e-16,118;UBERON:0006595,5.55e-16,118;UBERON:0004921,2.43e-14,114;UBERON:0002108,8.31e-11,4;UBERON:0000331,1.21e-08,3;UBERON:0002116,1.21e-08,3;UBERON:0001204,1.21e-08,3;UBERON:0001168,1.21e-08,3 | |||
|phase1_expression=0,9.77131141390211,5.45999087267443,5.74682001482977,3.50627010962443,8.2260843236826,5.84031601488814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7997726838022,6.19405058881359,7.46501553349526,5.1691439539089,8.40337807474967,15.771943814879,13.8616571367962,9.5344119581781,0,0,0,10.3986583110459,13.6312409193964,11.4334839506927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.842666520790511,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9113408974498,0,0,8.9409969323007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64335026387038,7.93351699990633,3.19932375802851,5.34144345279009,7.08771037271513,5.64713868945359,6.67134131534611,7.60902504450237,11.3886974770683,6.25856027951241,3.77002813200404,4.37704238490532,5.65395852645448,7.19055526923377,5.83572734661674,3.98282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42366414172764,0,0,0,0,0,0,8.74442509889552,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.432021363287205,0.209088296014469,0.655087691238533,0,0,0,13.0911123024711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07656627931371,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0.243106717068294,0.628839487883947,0.735374033800057,0.44449345560323,0.206035057238894,0.320919209591815,0.505394423527595,0.760437899670719,0,0.187283014939765,0.384150914429216,0.746661096422973,0.476293691283074,0.115884325944855,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0,0.715308569841963,0.581385666529314,0.376437521661322,0.423073039458382,0.182927972872773,0.263069711437843,0.407412341537585,0,0.237270036248348,0.0985044823755635,0.409231043169689,0.619747364743864,0.578719832943424,0,1.40358965067245,0.644613162144895,0,0,0 | |||
|short_description=p5@Cdx2 | |||
}} |
Latest revision as of 18:05, 25 September 2015
Short description: | p5@Cdx2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Cdx2_5end |
Coexpression cluster: | MCL_coexpression_mm9:412 |
Association with transcript: | 0bp_to_NM_007673, uc009anz.1_5end |
EntrezGene: | Cdx2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.80e-20 | 9 |
epithelial cell of alimentary canal | 3.80e-20 | 9 |
brush border epithelial cell | 3.28e-13 | 6 |
gut absorptive cell | 3.28e-13 | 6 |
enterocyte | 3.28e-13 | 6 |
endo-epithelial cell | 2.25e-11 | 15 |
columnar/cuboidal epithelial cell | 3.18e-11 | 7 |
epithelial cell | 3.64e-11 | 25 |
intestinal crypt stem cell | 1.51e-08 | 3 |
endodermal cell | 4.27e-08 | 20 |
M cell of gut | 1.46e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 6.02e-67 | 31 |
gastrointestinal system | 4.36e-45 | 47 |
mucosa | 1.00e-32 | 15 |
intestinal mucosa | 6.46e-29 | 13 |
wall of intestine | 6.46e-29 | 13 |
gastrointestinal system mucosa | 6.46e-29 | 13 |
epithelium of mucosa | 3.80e-20 | 9 |
gastrointestinal system epithelium | 3.80e-20 | 9 |
intestinal epithelium | 3.80e-20 | 9 |
organ component layer | 4.46e-19 | 24 |
digestive system | 2.18e-16 | 116 |
digestive tract | 2.18e-16 | 116 |
primitive gut | 2.18e-16 | 116 |
simple columnar epithelium | 3.70e-16 | 11 |
endoderm-derived structure | 5.55e-16 | 118 |
endoderm | 5.55e-16 | 118 |
presumptive endoderm | 5.55e-16 | 118 |
subdivision of digestive tract | 2.43e-14 | 114 |
small intestine | 8.31e-11 | 4 |
ileal mucosa | 1.21e-08 | 3 |
ileum | 1.21e-08 | 3 |
mucosa of small intestine | 1.21e-08 | 3 |
wall of small intestine | 1.21e-08 | 3 |