FFCP PHASE1:Mm9::chr6:39507829..39507850,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=209773|HGNC=|MCL_coexpression_id=2444|UniProt=Q8C4S8,B7ZP28,D3Z1C6|association_with_transcript=0bp_to_NM_172477,uc009blx.1,uc009bly.1,uc009blz.1_5end|description=CAGE_peak_3_at_Dennd2a_5end|id=chr6:39507829..39507850,-|ontology_enrichment_celltype=CL:0000055!1.90e-12!50;CL:0000221!5.93e-12!44;CL:0000133!5.93e-12!44;CL:0002319!1.99e-11!43;CL:0000393!4.29e-08!39;CL:0000211!4.29e-08!39;CL:0000540!2.26e-07!33;CL:0000047!2.26e-07!33;CL:0000031!2.26e-07!33;CL:0000404!2.26e-07!33|ontology_enrichment_celltype_v019_2=CL:0000221,3.20e-12,44;CL:0000133,3.20e-12,44;CL:0002319,1.13e-11,43;CL:0000393,3.32e-08,39;CL:0000211,3.32e-08,39;CL:0000540,1.93e-07,33;CL:0000047,1.93e-07,33;CL:0000031,1.93e-07,33;CL:0000404,1.93e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!9.65e-15!102;UBERON:0000924!9.65e-15!102;UBERON:0006601!9.65e-15!102;UBERON:0000073!2.78e-14!75;UBERON:0001016!2.78e-14!75;UBERON:0001017!2.97e-13!73;UBERON:0005743!2.97e-13!73;UBERON:0000468!4.78e-09!333;UBERON:0002346!8.36e-09!71;UBERON:0003075!8.36e-09!71;UBERON:0007284!8.36e-09!71;UBERON:0000033!1.40e-07!63;UBERON:0000922!1.84e-07!328;UBERON:0003056!8.19e-07!49;UBERON:0001049!9.16e-07!52;UBERON:0005068!9.16e-07!52;UBERON:0006241!9.16e-07!52;UBERON:0007135!9.16e-07!52;UBERON:0000010!9.16e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.40e-15,95;UBERON:0000924,6.40e-15,95;UBERON:0006601,6.40e-15,95;UBERON:0001016,4.18e-14,75;UBERON:0001017,4.76e-13,73;UBERON:0010314,4.54e-10,92;UBERON:0002346,4.90e-09,64;UBERON:0003075,4.90e-09,64;UBERON:0007284,4.90e-09,64;UBERON:0010371,7.99e-09,73;UBERON:0000010,4.88e-07,11|phase1_expression=2.5623815536767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0.202475267389826,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0.166234645358492,0,0.418531630736908,0,0.523523743973798,0,0,0.971020706062307,1.00717454380462,1.62203089951223,1.65192076945513,2.34717403304412,1.74420125104357,11.2039953194581,3.88859798148567,1.95980990275508,15.8127820801469,0,0,0,3.34437266846731,3.15186783932632,3.09403255366465,3.64169629547276,2.64495489636016,3.1691570175309,3.72728985276045,0.889294796111139,0.449949858640699,0,2.1314403448383,4.49400165777607,8.4528027170742,4.35496371695606,3.10513658162888,3.36519938162211,2.57085885963423,1.54607978666129,2.81728838194394,0.766763768145891,2.75765635983006,0,1.91531007127782,1.38245879930619,1.97829431595291,1.18933936683133,0.52091337055676,2.23346399201105,1.68828783009504,1.98637722109853,2.06240009831567,2.84743361598206,2.23679334990361,3.48340489332647,7.25486977025141,1.73918693221007,2.58127163094416,0.679971333707751,0.539703191637817,0,0,0.842666520790511,0,0,0,4.22530259330042,0,0,0,0,0,0,0.34255163915718,0.258937883647172,0.445326417194474,1.38788261412909,0.913396434936424,1.15307748628029,1.80867168663147,2.58695155698551,1.25666591329675,1.23597483867187,1.15679485535929,0,1.94120219936891,0.662524555381181,0,0,1.75668478206928,1.8850203613211,0,0,0,0.254140454146129,1.79748767285787,0.457500602818626,2.38743269014442,1.73824320192276,2.04572365864264,1.24672826735736,1.94689515681309,7.23059483337246,0.746441823660558,0.252722758433675,1.05220927943237,2.73252930221678,1.37941262660084,1.62055916824814,3.76762044589288,7.27990540919208,4.48398020996974,6.65282244374075,1.29351685369508,1.07783996466421,0.567318240503458,1.93546236580344,1.7535658594206,1.94633074457919,0.696504333044333,3.90986059175093,2.38841120182192,0,0,0,1.65700618028402,0.938104239924385,1.62055855314913,1.65721314909647,2.16440654922144,0.925602677324269,1.86027155800326,1.07309360559848,1.86824547787471,2.46839774870221,1.80584210487005,2.10778904819225,2.77779976108131,1.3173006917463,1.34206418760372,2.94405927989778,3.60166143327496,0,0.264450566663544,1.70630600428187,1.39342003116263,1.67527699718721,1.21010114774006,0.889512175379481,1.33157938278791,1.42358718463353,2.14108641141214,1.25667604400135,1.39269530428806,1.75467678407208,1.79763881730844,0.648414149624083,0.796565093017469,3.03468641524931,0.571242563048644,1.1270773567308,1.4255592949172,1.35766741017338,2.24434623649019,1.45444035385792,1.32849133181642,0.156998727841375,0.616985819609003,0.592905254174298,0.166845105716094,0.393117990226406,0,0.405720242777006,0,0,0.287696137450811,1.29708181420028,0,5.75072826109418,1.48856379067401,0.624075346229121,1.51547326768267,1.25578189465339,1.92977408545347,1.10851914099963,2.27389694124582,1.30371981153621,1.35796068620151,0.938760993154008,2.1775813467436,3.33261097240419,6.43941037930736,3.62560831444239,4.20782910332672,6.69710028361446,1.47476983244164,2.93564469172023,1.88043776155965,0,0,0,0.275936746304732,1.12385412991454,3.04750385139728,1.47541450839008,2.01976741763498,2.2085575359138,3.51394869866975,6.24727853425117,6.21318874676635,6.23836287430704,10.4738316391868,5.66734982344852,4.67609372658099,1.97643888973262,3.21321316421807,2.41298144854057,2.31485284767432,4.0721739838394,1.81467135269789,0,2.6705869977048,1.209294227859,1.13163047853539,1.18120757152309,2.76691633149535,3.10113951801865,4.36240475373007,4.27796854061666,0.316036757935816,1.05418608574999,1.03135543248187,3.06395645178409,1.8006109403131,2.71653235943784,3.21505552547388,3.54680467284547,2.85390108163313,3.78462747384878,7.30715877875038,0.938686832254841,4.66030555900404,0,1.15420377059036,2.74489525383039,2.95533332147964,1.55184047204077,0.984845398470368,1.1659233465194,2.41052892613663,0.170870880797853,1.857481811669,1.29636169158798,0.941842285023455,0.546776910884101,0.457556346413045,0.849892149969277,0.279902904647316,0.690999869022119,0,2.37251995185852,1.82987520414164,0.86404272657441,1.04544148007234,0.87345025498471,1.88810084938749,2.89287095038676,2.09404753587224,0.648074866458964,0.621339313086926,0,1.64468200648377,2.48187735685646,1.16670713006429,1.29159823477731,1.35164900392623,3.16864544343536,2.0832701575032,0.838874755405687,0.724752362478018,0.864090018773596,0,0.405450430580328,0.410843828659309,0.25984164595559,0.179026695667481,0,0.120195449519969,0,0,0.304827226619999,0.100826185136841,0,0.192423683280659,0,1.81384306892169,0.443971906748129,1.43542170575161,1.51096154727671,0.19318959403219,7.3196165425961,3.84618410961257,0,0,0.564751842617067,1.84130094602871,2.29158205375759,1.20297227640581,1.37016503954128,2.2661816921691,1.35004500046361,1.35096360967266,0.453142408984205,0.51776031175182,1.3492355185943,3.19219898720825,1.70733605754134,2.43106717068294,1.04806581313991,3.30918315210025,1.55572709461131,1.44224540067226,1.28367683836726,3.28506375292937,2.02783439912192,1.32038438970253,1.96647165686753,2.88113185821912,3.84817642002609,2.38146845641537,3.01299247456624,3.27945674788299,2.06042950401653,2.06078488188156,2.74295401908332,1.95223386775271,2.62279808942053,1.16277133305863,1.78807822789128,1.52306294205018,2.74391959309159,2.10455769150274,1.22223702461276,2.24456908663095,2.13543032623513,3.74317033027141,1.63692417267876,2.63392630016142,2.50778594275484,3.49734809113124,1.87145286756327,1.93383948643468,1.53030665655075,1.10295709559758,1.62307484934295|short_description=p3@Dennd2a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=209773 | |||
|HGNC= | |||
|MCL_coexpression_id=2444 | |||
|TSSclassifier=NA | |||
|UniProt=Q8C4S8,B7ZP28,D3Z1C6 | |||
|association_with_transcript=0bp_to_NM_172477,uc009blx.1,uc009bly.1,uc009blz.1_5end | |||
|cluster_id=chr6:39507829..39507850,- | |||
|description=CAGE_peak_3_at_Dennd2a_5end | |||
|id=chr6:39507829..39507850,- | |||
|ontology_enrichment_celltype=CL:0000055!1.90e-12!50;CL:0000221!5.93e-12!44;CL:0000133!5.93e-12!44;CL:0002319!1.99e-11!43;CL:0000393!4.29e-08!39;CL:0000211!4.29e-08!39;CL:0000540!2.26e-07!33;CL:0000047!2.26e-07!33;CL:0000031!2.26e-07!33;CL:0000404!2.26e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.20e-12,44;CL:0000133,3.20e-12,44;CL:0002319,1.13e-11,43;CL:0000393,3.32e-08,39;CL:0000211,3.32e-08,39;CL:0000540,1.93e-07,33;CL:0000047,1.93e-07,33;CL:0000031,1.93e-07,33;CL:0000404,1.93e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!9.65e-15!102;UBERON:0000924!9.65e-15!102;UBERON:0006601!9.65e-15!102;UBERON:0000073!2.78e-14!75;UBERON:0001016!2.78e-14!75;UBERON:0001017!2.97e-13!73;UBERON:0005743!2.97e-13!73;UBERON:0000468!4.78e-09!333;UBERON:0002346!8.36e-09!71;UBERON:0003075!8.36e-09!71;UBERON:0007284!8.36e-09!71;UBERON:0000033!1.40e-07!63;UBERON:0000922!1.84e-07!328;UBERON:0003056!8.19e-07!49;UBERON:0001049!9.16e-07!52;UBERON:0005068!9.16e-07!52;UBERON:0006241!9.16e-07!52;UBERON:0007135!9.16e-07!52;UBERON:0000010!9.16e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.40e-15,95;UBERON:0000924,6.40e-15,95;UBERON:0006601,6.40e-15,95;UBERON:0001016,4.18e-14,75;UBERON:0001017,4.76e-13,73;UBERON:0010314,4.54e-10,92;UBERON:0002346,4.90e-09,64;UBERON:0003075,4.90e-09,64;UBERON:0007284,4.90e-09,64;UBERON:0010371,7.99e-09,73;UBERON:0000010,4.88e-07,11 | |||
|phase1_expression=2.5623815536767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0.202475267389826,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0.166234645358492,0,0.418531630736908,0,0.523523743973798,0,0,0.971020706062307,1.00717454380462,1.62203089951223,1.65192076945513,2.34717403304412,1.74420125104357,11.2039953194581,3.88859798148567,1.95980990275508,15.8127820801469,0,0,0,3.34437266846731,3.15186783932632,3.09403255366465,3.64169629547276,2.64495489636016,3.1691570175309,3.72728985276045,0.889294796111139,0.449949858640699,0,2.1314403448383,4.49400165777607,8.4528027170742,4.35496371695606,3.10513658162888,3.36519938162211,2.57085885963423,1.54607978666129,2.81728838194394,0.766763768145891,2.75765635983006,0,1.91531007127782,1.38245879930619,1.97829431595291,1.18933936683133,0.52091337055676,2.23346399201105,1.68828783009504,1.98637722109853,2.06240009831567,2.84743361598206,2.23679334990361,3.48340489332647,7.25486977025141,1.73918693221007,2.58127163094416,0.679971333707751,0.539703191637817,0,0,0.842666520790511,0,0,0,4.22530259330042,0,0,0,0,0,0,0.34255163915718,0.258937883647172,0.445326417194474,1.38788261412909,0.913396434936424,1.15307748628029,1.80867168663147,2.58695155698551,1.25666591329675,1.23597483867187,1.15679485535929,0,1.94120219936891,0.662524555381181,0,0,1.75668478206928,1.8850203613211,0,0,0,0.254140454146129,1.79748767285787,0.457500602818626,2.38743269014442,1.73824320192276,2.04572365864264,1.24672826735736,1.94689515681309,7.23059483337246,0.746441823660558,0.252722758433675,1.05220927943237,2.73252930221678,1.37941262660084,1.62055916824814,3.76762044589288,7.27990540919208,4.48398020996974,6.65282244374075,1.29351685369508,1.07783996466421,0.567318240503458,1.93546236580344,1.7535658594206,1.94633074457919,0.696504333044333,3.90986059175093,2.38841120182192,0,0,0,1.65700618028402,0.938104239924385,1.62055855314913,1.65721314909647,2.16440654922144,0.925602677324269,1.86027155800326,1.07309360559848,1.86824547787471,2.46839774870221,1.80584210487005,2.10778904819225,2.77779976108131,1.3173006917463,1.34206418760372,2.94405927989778,3.60166143327496,0,0.264450566663544,1.70630600428187,1.39342003116263,1.67527699718721,1.21010114774006,0.889512175379481,1.33157938278791,1.42358718463353,2.14108641141214,1.25667604400135,1.39269530428806,1.75467678407208,1.79763881730844,0.648414149624083,0.796565093017469,3.03468641524931,0.571242563048644,1.1270773567308,1.4255592949172,1.35766741017338,2.24434623649019,1.45444035385792,1.32849133181642,0.156998727841375,0.616985819609003,0.592905254174298,0.166845105716094,0.393117990226406,0,0.405720242777006,0,0,0.287696137450811,1.29708181420028,0,5.75072826109418,1.48856379067401,0.624075346229121,1.51547326768267,1.25578189465339,1.92977408545347,1.10851914099963,2.27389694124582,1.30371981153621,1.35796068620151,0.938760993154008,2.1775813467436,3.33261097240419,6.43941037930736,3.62560831444239,4.20782910332672,6.69710028361446,1.47476983244164,2.93564469172023,1.88043776155965,0,0,0,0.275936746304732,1.12385412991454,3.04750385139728,1.47541450839008,2.01976741763498,2.2085575359138,3.51394869866975,6.24727853425117,6.21318874676635,6.23836287430704,10.4738316391868,5.66734982344852,4.67609372658099,1.97643888973262,3.21321316421807,2.41298144854057,2.31485284767432,4.0721739838394,1.81467135269789,0,2.6705869977048,1.209294227859,1.13163047853539,1.18120757152309,2.76691633149535,3.10113951801865,4.36240475373007,4.27796854061666,0.316036757935816,1.05418608574999,1.03135543248187,3.06395645178409,1.8006109403131,2.71653235943784,3.21505552547388,3.54680467284547,2.85390108163313,3.78462747384878,7.30715877875038,0.938686832254841,4.66030555900404,0,1.15420377059036,2.74489525383039,2.95533332147964,1.55184047204077,0.984845398470368,1.1659233465194,2.41052892613663,0.170870880797853,1.857481811669,1.29636169158798,0.941842285023455,0.546776910884101,0.457556346413045,0.849892149969277,0.279902904647316,0.690999869022119,0,2.37251995185852,1.82987520414164,0.86404272657441,1.04544148007234,0.87345025498471,1.88810084938749,2.89287095038676,2.09404753587224,0.648074866458964,0.621339313086926,0,1.64468200648377,2.48187735685646,1.16670713006429,1.29159823477731,1.35164900392623,3.16864544343536,2.0832701575032,0.838874755405687,0.724752362478018,0.864090018773596,0,0.405450430580328,0.410843828659309,0.25984164595559,0.179026695667481,0,0.120195449519969,0,0,0.304827226619999,0.100826185136841,0,0.192423683280659,0,1.81384306892169,0.443971906748129,1.43542170575161,1.51096154727671,0.19318959403219,7.3196165425961,3.84618410961257,0,0,0.564751842617067,1.84130094602871,2.29158205375759,1.20297227640581,1.37016503954128,2.2661816921691,1.35004500046361,1.35096360967266,0.453142408984205,0.51776031175182,1.3492355185943,3.19219898720825,1.70733605754134,2.43106717068294,1.04806581313991,3.30918315210025,1.55572709461131,1.44224540067226,1.28367683836726,3.28506375292937,2.02783439912192,1.32038438970253,1.96647165686753,2.88113185821912,3.84817642002609,2.38146845641537,3.01299247456624,3.27945674788299,2.06042950401653,2.06078488188156,2.74295401908332,1.95223386775271,2.62279808942053,1.16277133305863,1.78807822789128,1.52306294205018,2.74391959309159,2.10455769150274,1.22223702461276,2.24456908663095,2.13543032623513,3.74317033027141,1.63692417267876,2.63392630016142,2.50778594275484,3.49734809113124,1.87145286756327,1.93383948643468,1.53030665655075,1.10295709559758,1.62307484934295 | |||
|short_description=p3@Dennd2a | |||
}} |
Latest revision as of 04:02, 27 September 2015
Short description: | p3@Dennd2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dennd2a_5end |
Coexpression cluster: | MCL_coexpression_mm9:2444 |
Association with transcript: | 0bp_to_NM_172477, uc009blx.1, uc009bly.1, uc009blz.1_5end |
EntrezGene: | Dennd2a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.20e-12 | 44 |
neurectodermal cell | 3.20e-12 | 44 |
neural cell | 1.13e-11 | 43 |
electrically responsive cell | 3.32e-08 | 39 |
electrically active cell | 3.32e-08 | 39 |
neuron | 1.93e-07 | 33 |
neuronal stem cell | 1.93e-07 | 33 |
neuroblast | 1.93e-07 | 33 |
electrically signaling cell | 1.93e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 6.40e-15 | 95 |
ectoderm | 6.40e-15 | 95 |
presumptive ectoderm | 6.40e-15 | 95 |
nervous system | 4.18e-14 | 75 |
central nervous system | 4.76e-13 | 73 |
structure with developmental contribution from neural crest | 4.54e-10 | 92 |
neurectoderm | 4.90e-09 | 64 |
neural plate | 4.90e-09 | 64 |
presumptive neural plate | 4.90e-09 | 64 |
ecto-epithelium | 7.99e-09 | 73 |
peripheral nervous system | 4.88e-07 | 11 |