UBERON:0000075: Difference between revisions
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|located_in= | |located_in= | ||
|name=subdivision of skeletal system | |name=subdivision of skeletal system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001434 | |part_of=UBERON:0001434 | ||
Latest revision as of 17:05, 12 September 2014
| Name: | subdivision of skeletal system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003] | ||
| Xrefs: |
| ||
| Synonyms: |
"skeletal system part" RELATED [] "skeletal system subdivision" EXACT [FMA:85544] | ||
| Alt_id: | UBERON:0010322 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011216(organ system subdivision) |
|---|---|
| part_of: | UBERON:0001434(skeletal system) |
Children
| is a: | UBERON:0001130 (vertebral column),UBERON:0002517 (basicranium),UBERON:0003128 (cranium),UBERON:0003129 (skull),UBERON:0004761 (cartilaginous neurocranium),UBERON:0010323 (cranial skeletal system),UBERON:0011137 (axial skeletal system),UBERON:0011138 (post-cranial axial skeletal system),UBERON:0011158 (primary subdivision of skull),UBERON:0011159 (primary subdivision of cranial skeletal system),UBERON:0011249 (appendicular skeletal system) |
|---|---|
| part of: | UBERON:0010912 (subdivision of skeleton) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10195-103E6 (olfactory region, adult)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
... further results Mouse (Mus musculus)
- 10195-103E6 (olfactory region, adult)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000075 (subdivision of skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.88e-51 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_401b79322dc7bcdcd2810a036c808ab0 | p@chr3:174737010..174737023, + |
| 1.88e-51 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_401b79322dc7bcdcd2810a036c808ab0 | p@chr3:174737010..174737023, + |
| 2.62e-44 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_ed8758bb90017b2982c753d61f9e8f2f | p4@PAX1 |
| 2.62e-44 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_ed8758bb90017b2982c753d61f9e8f2f | p4@PAX1 |
| 5.38e-44 | FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_0f65b1f68670eeb5c25b2468bf65455b | p@chr1:24217213..24217226, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_0f65b1f68670eeb5c25b2468bf65455b | p@chr1:24217213..24217226, + |
| 7.83e-38 | FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_33653884859d73f39ced41f212773751 | p@chr22:23586671..23586679, + |
| 7.83e-38 | FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_33653884859d73f39ced41f212773751 | p@chr22:23586671..23586679, + |
| 1.02e-36 | FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_e9bb9f13cb1fa959c779a9f9fda8834a | p1@ENST00000555639 |
| 1.02e-36 | FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_e9bb9f13cb1fa959c779a9f9fda8834a | p1@ENST00000555639 |
| 2.1e-35 | FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_23cf261d0084387ceee5652d74071970 | p2@PAX9 |
| 2.1e-35 | FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_23cf261d0084387ceee5652d74071970 | p2@PAX9 |
| 7.98e-34 | FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_dc85b6c70736ef20beae6110a125d92e | p1@ENST00000427892, p1@uc001dgp.1 |
| 7.98e-34 | FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_dc85b6c70736ef20beae6110a125d92e | p1@ENST00000427892, p1@uc001dgp.1 |
| 9.47e-34 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_e73158edb69a26ad4316a33dfac0b5d7 | p4@PAX9 |
| 9.47e-34 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_e73158edb69a26ad4316a33dfac0b5d7 | p4@PAX9 |
| 2.03e-33 | FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_6fe1bcab5e5433691b23bde493b2a144 | p@chr15:78817557..78817567, + |
| 2.03e-33 | FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_6fe1bcab5e5433691b23bde493b2a144 | p@chr15:78817557..78817567, + |
| 3.37e-33 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_3e262b263f50c19622b7fb283f21bf2e | p26@Myo18a |
| 3.37e-33 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_3e262b263f50c19622b7fb283f21bf2e | p26@Myo18a |
| 4.33e-33 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_f821cb26cc14b5999a63031ca07e39fc | p@chr9:21934585..21934591, - |
| 4.33e-33 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_f821cb26cc14b5999a63031ca07e39fc | p@chr8:75097542..75097549, + |
| 4.33e-33 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_f821cb26cc14b5999a63031ca07e39fc | p@chr2:32482372..32482381, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_f821cb26cc14b5999a63031ca07e39fc | p@chr8:75097542..75097549, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_f821cb26cc14b5999a63031ca07e39fc | p@chr9:21934585..21934591, - |
| 4.33e-33 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_f821cb26cc14b5999a63031ca07e39fc | p@chr2:32482372..32482381, + |
| 1.06e-32 | FFCP PHASE1:Hg19::chr14:37126852..37126863,+#_9613815bb4d008d44a393c3d57009a23 | p2@ENST00000555639 |
| 1.06e-32 | FFCP PHASE2:Hg19::chr14:37126852..37126863,+#_9613815bb4d008d44a393c3d57009a23 | p2@ENST00000555639 |
| 9.32e-32 | FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_174a3be3cca12d03010c7a2cbf115487 | p@chr1:75599683..75599699, - |
| 9.32e-32 | FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_174a3be3cca12d03010c7a2cbf115487 | p@chr1:75599683..75599699, - |
| 2.86e-31 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_c099c8202dff6b937d8165259cda9e12 | p@chr5:30104176..30104187, - |
| 2.86e-31 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_c099c8202dff6b937d8165259cda9e12 | p@chr5:30104176..30104187, - |
| 3.24e-31 | FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_6b8060986f2ce66781d7ef68a5a574f9 | p@chr1:75599672..75599682, - |
| 3.24e-31 | FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_6b8060986f2ce66781d7ef68a5a574f9 | p@chr1:75599672..75599682, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p4@Kncn |
| 6.66e-30 | FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p3@Gm1322 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Otof |
| 6.66e-30 | FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr18:81327205..81327211, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr9:42206745..42206774, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p3@Gipc3 |
| 6.66e-30 | FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr3:154459184..154459195, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p7@Pkn3 |
| 6.66e-30 | FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr6:86746562..86746579, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr5:28035962..28035983, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr1:172843847..172843880, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr18:66033526..66033539, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Espnl |
| 6.66e-30 | FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p1@Tmprss3 |
| 6.66e-30 | FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p4@BC030867 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr3:81012915..81012923, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr10:108316802..108316807, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr1:16651649..16651655, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Fscn2 |
| 6.66e-30 | FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr15:103146966..103146971, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr13:43699228..43699239, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Tecta |
| 6.66e-30 | FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p9@Otof |
| 6.66e-30 | FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr4:133802857..133802884, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr16:93971325..93971337, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr18:81327205..81327211, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr9:66860888..66860899, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p4@Gipc3 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr15:65641779..65641790, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr2:170417150..170417155, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p4@Otogl |
| 6.66e-30 | FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr6:29428397..29428407, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr12:13508046..13508055, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p10@Tecta |
| 6.66e-30 | FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr17:13983102..13983126, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Otol1 |
| 6.66e-30 | FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p4@Otogl |
| 6.66e-30 | FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr11:4689776..4689785, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p6@Jag1 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p1@Gm1322 |
| 6.66e-30 | FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr6:113251606..113251613, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p18@Trpm3 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p7@Tecta |
| 6.66e-30 | FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr11:89702580..89702593, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr3:35012397..35012405, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr3:154459184..154459195, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr2:73232344..73232356, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Gpr152 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Strc |
| 6.66e-30 | FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr19:55256373..55256384, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p7@Glt25d2 |
| 6.66e-30 | FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr13:78257491..78257498, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr13:43699228..43699239, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p2@Tmprss3 |
| 6.66e-30 | FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr7:139597684..139597691, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p21@Espn |
| 6.66e-30 | FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr14:102297747..102297765, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr11:94371127..94371139, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr3:100724698..100724706, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr12:13508046..13508055, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr7:29733825..29733837, - |
| 6.66e-30 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr5:28035962..28035983, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr9:42206745..42206774, - |
| 6.66e-30 | FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr5:150945209..150945220, + |
| 6.66e-30 | FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr1:93235253..93235264, + |
| 6.66e-30 | FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_882a5095cc6c4cbecd9521b3bd0ca10b | p@chr13:78257518..78257522, + |
