UBERON:0002465: Difference between revisions
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|located_in= | |located_in= | ||
|name=lymphoid system | |name=lymphoid system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002193;;UBERON:0002405 | |part_of=UBERON:0002193;;UBERON:0002405 | ||
Latest revision as of 17:32, 12 September 2014
| Name: | lymphoid system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia)." [https://sourceforge.net/tracker/?func | ||
| Xrefs: |
| ||
| Synonyms: |
"lymphatic circulatory system" RELATED [UBERON:cjm] "lymphatic system" NARROW [ZFA:0000385] "systema lymphoideum" RELATED LATIN [Wikipedia:Lymphoid_system] | ||
| Comments: | We follow FMA and MA in distinguishing between lymphatic system and lymphoid system, with lymhoid tissue part of the non-lymphatic component, although these terms are often used interchangeably. We assume the ZFA term lymphatic tissue actually corresponds to the broader class (e.g. ZFA lymph node in the ZFA lymphatic system). See tracker for more comments. | ||
| Alt_id: |
UBERON:0002096 UBERON:MA_0002435-FMA_74594 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster) |
|---|---|
| part_of: | UBERON:0002193(hemolymphoid system),UBERON:0002405(immune system) |
Children
| part of: | UBERON:0000029 (lymph node),UBERON:0001744 (lymphoid tissue),UBERON:0004536 (lymph vasculature),UBERON:0006558 (lymphatic part of lymphoid system) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
- 10077-102A5 (lymph node, adult, donor1)
- 10261-104C9
- 10262-104D1 (Follicle Associated Epithelium, pool2)
- 10263-104D2 (Follicle Associated Epithelium, pool3)
- 1063-29H9 (accessory axillary lymph node, adult)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11317-117D3 (Endothelial Cells - Lymphatic, donor2)
- 11393-118C7 (Endothelial Cells - Lymphatic, donor3)
- 11506-119G3 (Fibroblast - Lymphatic, donor1)
... further results Mouse (Mus musculus)
- 10047-101G2 (tonsil, adult, pool1)
- 10077-102A5 (lymph node, adult, donor1)
- 10261-104C9
- 10262-104D1 (Follicle Associated Epithelium, pool2)
- 10263-104D2 (Follicle Associated Epithelium, pool3)
- 1063-29H9 (accessory axillary lymph node, adult)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11317-117D3 (Endothelial Cells - Lymphatic, donor2)
- 11393-118C7 (Endothelial Cells - Lymphatic, donor3)
- 11506-119G3 (Fibroblast - Lymphatic, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002465 (lymphoid system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:15705318..15705342,+#_6995975398f133fbd51e4bd7829cac3f | p@chr16:15705318..15705342, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:15705318..15705342,+#_6995975398f133fbd51e4bd7829cac3f | p@chr16:15705318..15705342, + |
| 8.32e-82 | FFCP PHASE2:Hg19::chr9:13432964..13432971,-#_f16b1a7c61edf32cdd1574f38d7f95c1 | p@chr9:13432964..13432971, - |
| 8.32e-82 | FFCP PHASE1:Hg19::chr9:13432964..13432971,-#_f16b1a7c61edf32cdd1574f38d7f95c1 | p@chr9:13432964..13432971, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr12:115694343..115694368,-#_d5d055c22bd7ae983221a314a6f0e29f | p1@uc007pgz.1 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr12:115694343..115694368,-#_d5d055c22bd7ae983221a314a6f0e29f | p1@uc007pgz.1 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr12:114546123..114546134,-#_d5d055c22bd7ae983221a314a6f0e29f | p@chr12:114546123..114546134, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr12:114546123..114546134,-#_d5d055c22bd7ae983221a314a6f0e29f | p@chr12:114546123..114546134, - |
| 2.21e-65 | FFCP PHASE1:Mm9::chr12:116073906..116073921,-#_68fa8616585334bdcf90e1ce170bcc00 | p@chr12:116073906..116073921, - |
| 2.21e-65 | FFCP PHASE2:Mm9::chr12:114545296..114545316,-#_68fa8616585334bdcf90e1ce170bcc00 | p2@uc007pgn.1 |
| 2.21e-65 | FFCP PHASE1:Mm9::chr12:114545296..114545316,-#_68fa8616585334bdcf90e1ce170bcc00 | p2@uc007pgn.1 |
| 2.21e-65 | FFCP PHASE2:Mm9::chr12:116073906..116073921,-#_68fa8616585334bdcf90e1ce170bcc00 | p@chr12:116073906..116073921, - |
| 1.84e-63 | FFCP PHASE1:Hg19::chr1:65344872..65344880,-#_f5ee18d9335476f70f2b78d05186a685 | p15@JAK1 |
| 1.84e-63 | FFCP PHASE2:Hg19::chr1:65344872..65344880,-#_f5ee18d9335476f70f2b78d05186a685 | p15@JAK1 |
| 1.75e-61 | FFCP PHASE1:Hg19::chr3:30560368..30560379,+#_e45af82593258e7d210fec6576c49736 | p@chr3:30560368..30560379, + |
| 1.75e-61 | FFCP PHASE2:Hg19::chr3:30560368..30560379,+#_e45af82593258e7d210fec6576c49736 | p@chr3:30560368..30560379, + |
| 3.74e-59 | FFCP PHASE2:Hg19::chr17:28534912..28534942,-#_7c98fcfc53f3dc5ff65f5df30e94e9fa | p@chr17:28534912..28534942, - |
| 3.74e-59 | FFCP PHASE1:Hg19::chr17:28534912..28534942,-#_7c98fcfc53f3dc5ff65f5df30e94e9fa | p@chr17:28534912..28534942, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr8:23117055..23117056, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr12:115979100..115979103, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr2:63059909..63059910, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p1@ENSMUST00000114212 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p1@ENSMUST00000114212 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr2:14201203..14201212, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr19:38060099..38060102, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr6:69785263..69785268, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr6:69785263..69785268, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr17:59564142..59564144, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr12:115974938..115974945, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr17:59564142..59564144, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr9:69086930..69086933, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr12:116051009..116051016, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr19:38060099..38060102, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr12:115979100..115979103, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr8:23117055..23117056, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr9:69086930..69086933, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr2:14201203..14201212, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr19:31038353..31038362, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr2:63059909..63059910, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr12:115974938..115974945, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr19:31038353..31038362, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_9d97d91a4a4353374ee4a9b7bd7f26e1 | p@chr12:116051009..116051016, - |
| 9.6e-55 | FFCP PHASE2:Hg19::chr2:56149881..56149899,-#_305f001d7199e49d14add8bbf6f3762d | p14@EFEMP1 |
| 9.6e-55 | FFCP PHASE1:Hg19::chr2:56149881..56149899,-#_305f001d7199e49d14add8bbf6f3762d | p14@EFEMP1 |
| 1.03e-52 | FFCP PHASE2:Hg19::chr19:48613876..48613886,-#_d37e197d420e84ef98e6cdc5e40f7d48 | p7@PLA2G4C |
| 1.03e-52 | FFCP PHASE1:Hg19::chr19:48613876..48613886,-#_d37e197d420e84ef98e6cdc5e40f7d48 | p7@PLA2G4C |
| 2.44e-51 | FFCP PHASE2:Hg19::chr6:74848034..74848043,+#_19ee150e1b8f3910a80bd6ad0d73201e | p@chr6:74848034..74848043, + |
| 2.44e-51 | FFCP PHASE1:Hg19::chr6:74848034..74848043,+#_19ee150e1b8f3910a80bd6ad0d73201e | p@chr6:74848034..74848043, + |
| 1.12e-45 | FFCP PHASE1:Hg19::chr6:5054373..5054392,-#_e5bea54c3e84920708e7cd362ff4423a | p1@AK126470 |
| 1.12e-45 | FFCP PHASE2:Hg19::chr6:5054373..5054392,-#_e5bea54c3e84920708e7cd362ff4423a | p1@AK126470 |
| 1.4e-45 | FFCP PHASE2:Hg19::chr7:79998842..79998855,+#_01b2d8bfb6f45144e5b8539a1f23de42 | p25@CD36 |
| 1.4e-45 | FFCP PHASE1:Hg19::chr7:79998842..79998855,+#_01b2d8bfb6f45144e5b8539a1f23de42 | p25@CD36 |
| 1.57e-45 | FFCP PHASE2:Hg19::chr3:145968441..145968451,-#_91a9efd85dd73acbff918d139b9ff4d9 | p17@PLSCR4 |
| 1.57e-45 | FFCP PHASE1:Hg19::chr3:145968441..145968451,-#_91a9efd85dd73acbff918d139b9ff4d9 | p17@PLSCR4 |
| 1.77e-45 | FFCP PHASE2:Hg19::chr2:33661536..33661549,+#_8d2ef55a303257a32515648cd2e6d309 | p17@RASGRP3 |
| 1.77e-45 | FFCP PHASE1:Hg19::chr2:33661536..33661549,+#_8d2ef55a303257a32515648cd2e6d309 | p17@RASGRP3 |
| 1.98e-45 | FFCP PHASE1:Hg19::chr9:13446440..13446456,+#_639a94dd090220a680fa712ebd3d6ae5 | p2@ENST00000428006 |
| 1.98e-45 | FFCP PHASE2:Hg19::chr9:13446440..13446456,+#_639a94dd090220a680fa712ebd3d6ae5 | p2@ENST00000428006 |
| 4.18e-45 | FFCP PHASE2:Hg19::chr17:28534879..28534889,-#_6c29c6f2733ec0a984dbd016f40ffa0c | p@chr17:28534879..28534889, - |
| 4.18e-45 | FFCP PHASE2:Hg19::chr12:46807404..46807413,+#_6c29c6f2733ec0a984dbd016f40ffa0c | p@chr12:46807404..46807413, + |
| 4.18e-45 | FFCP PHASE1:Hg19::chr12:46807404..46807413,+#_6c29c6f2733ec0a984dbd016f40ffa0c | p@chr12:46807404..46807413, + |
| 4.18e-45 | FFCP PHASE1:Hg19::chr17:28534879..28534889,-#_6c29c6f2733ec0a984dbd016f40ffa0c | p@chr17:28534879..28534889, - |
| 5.64e-45 | FFCP PHASE1:Hg19::chr7:79998905..79998917,+#_c7965385c155d3bdb71d9a3e5cd78bff | p26@CD36 |
| 5.64e-45 | FFCP PHASE2:Hg19::chr7:79998905..79998917,+#_c7965385c155d3bdb71d9a3e5cd78bff | p26@CD36 |
| 1.66e-44 | FFCP PHASE1:Mm9::chr6:69714657..69714683,-#_5db4daba84fddaab6ec80d93118350eb | p@chr6:69714657..69714683, - |
| 1.66e-44 | FFCP PHASE2:Mm9::chr6:69714657..69714683,-#_5db4daba84fddaab6ec80d93118350eb | p@chr6:69714657..69714683, - |
| 4.58e-44 | FFCP PHASE2:Mm9::chr6:70592357..70592379,+#_78f7517b26463d709818d0ad3c4bbb27 | p@chr6:70592357..70592379, + |
| 4.58e-44 | FFCP PHASE1:Mm9::chr6:70592357..70592379,+#_78f7517b26463d709818d0ad3c4bbb27 | p@chr6:70592357..70592379, + |
| 1.76e-43 | FFCP PHASE1:Hg19::chr8:30300216..30300245,+#_02927e0e24e092c99de0a85e1f77b9f0 | p10@RBPMS |
| 1.76e-43 | FFCP PHASE2:Hg19::chr8:30300216..30300245,+#_02927e0e24e092c99de0a85e1f77b9f0 | p10@RBPMS |
| 1.45e-42 | FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_5484eecc86b53fd827524c2c4ac478cf | p@chr4:38057595..38057624, - |
| 1.45e-42 | FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_5484eecc86b53fd827524c2c4ac478cf | p@chr4:38057595..38057624, - |
| 2.0e-40 | FFCP PHASE1:Hg19::chr1:66723029..66723041,+#_31cf119cbf5999898ebf7716886f3ee8 | p54@PDE4B |
| 2.0e-40 | FFCP PHASE2:Hg19::chr11:108794429..108794441,+#_31cf119cbf5999898ebf7716886f3ee8 | p@chr11:108794429..108794441, + |
| 2.0e-40 | FFCP PHASE1:Hg19::chr11:108794408..108794422,+#_31cf119cbf5999898ebf7716886f3ee8 | p@chr11:108794408..108794422, + |
| 2.0e-40 | FFCP PHASE2:Hg19::chr17:75873825..75873826,+#_31cf119cbf5999898ebf7716886f3ee8 | p@chr17:75873825..75873826, + |
| 2.0e-40 | FFCP PHASE2:Hg19::chr2:33661526..33661535,+#_31cf119cbf5999898ebf7716886f3ee8 | p23@RASGRP3 |
| 2.0e-40 | FFCP PHASE1:Hg19::chr4:114238344..114238353,+#_31cf119cbf5999898ebf7716886f3ee8 | p58@ANK2 |
| 2.0e-40 | FFCP PHASE1:Hg19::chr11:108794429..108794441,+#_31cf119cbf5999898ebf7716886f3ee8 | p@chr11:108794429..108794441, + |
| 2.0e-40 | FFCP PHASE2:Hg19::chr1:66723029..66723041,+#_31cf119cbf5999898ebf7716886f3ee8 | p54@PDE4B |
| 2.0e-40 | FFCP PHASE1:Hg19::chr2:33661526..33661535,+#_31cf119cbf5999898ebf7716886f3ee8 | p23@RASGRP3 |
| 2.0e-40 | FFCP PHASE1:Hg19::chr17:75873825..75873826,+#_31cf119cbf5999898ebf7716886f3ee8 | p@chr17:75873825..75873826, + |
| 2.0e-40 | FFCP PHASE2:Hg19::chr4:114238344..114238353,+#_31cf119cbf5999898ebf7716886f3ee8 | p58@ANK2 |
| 2.0e-40 | FFCP PHASE2:Hg19::chr11:108794408..108794422,+#_31cf119cbf5999898ebf7716886f3ee8 | p@chr11:108794408..108794422, + |
| 4.75e-40 | FFCP PHASE2:Hg19::chr4:38057520..38057536,-#_ad8efc3c9b241ad7d037c7c712e0dfb5 | p@chr4:38057520..38057536, - |
| 4.75e-40 | FFCP PHASE1:Hg19::chr4:38057520..38057536,-#_ad8efc3c9b241ad7d037c7c712e0dfb5 | p@chr4:38057520..38057536, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr1:40599829..40599836,+#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr1:40599829..40599836, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr2:45535559..45535562,+#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr2:45535559..45535562, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr2:45535559..45535562,+#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr2:45535559..45535562, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr6:28646564..28646565,-#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr6:28646564..28646565, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr8:25523566..25523573,+#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr8:25523566..25523573, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr19:32143349..32143352,-#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr19:32143349..32143352, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr6:143591339..143591345,+#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr6:143591339..143591345, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr11:42881914..42881920,+#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr11:42881914..42881920, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr1:40599829..40599836,+#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr1:40599829..40599836, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr8:25523566..25523573,+#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr8:25523566..25523573, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr6:28646564..28646565,-#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr6:28646564..28646565, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr19:32143349..32143352,-#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr19:32143349..32143352, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr12:115366227..115366256,-#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr12:115366227..115366256, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr6:143591339..143591345,+#_f063aca2384bca0f2d760f68e1ef17d1 | p@chr6:143591339..143591345, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
