FFCP PHASE1:Mm9::chr4:41319351..41319353,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:41319351..41319353,+
|short_description=p@chr4:41319351..41319353,+
|description=CAGE_peak_at_chr4:41319351..41319353,+
|association_with_transcript=NA
|E...") |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:41319351..41319353,+ | |||
|description=CAGE_peak_at_chr4:41319351..41319353,+ | |||
|id=chr4:41319351..41319353,+ | |||
|ontology_enrichment_celltype=CL:0000239!2.82e-11!6;CL:0000677!2.82e-11!6;CL:0000212!2.82e-11!6;CL:0000584!2.82e-11!6;CL:0000075!1.58e-09!7;CL:0000066!2.80e-08!25;CL:0000063!6.41e-08!66;CL:0002563!3.39e-07!9;CL:0002251!3.39e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.73e-14,7;CL:0002476,4.00e-13,2;CL:0000239,4.12e-10,6;CL:0000677,4.12e-10,6;CL:0000584,4.12e-10,6;CL:0000682,5.12e-09,3;CL:0000075,9.62e-09,7;CL:0000066,1.23e-08,25;CL:0002194,5.23e-07,4;CL:0000766,5.23e-07,4;CL:0000234,5.23e-07,4;CL:0000576,5.23e-07,4;CL:0000235,5.23e-07,4;CL:0000864,5.23e-07,4;CL:0002009,5.23e-07,4;CL:0000040,5.23e-07,4;CL:0000559,5.23e-07,4;CL:0002076,6.12e-07,15;CL:0002563,6.55e-07,9;CL:0002251,6.55e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!6.39e-14!15;UBERON:0001242!1.23e-10!13;UBERON:0000060!1.23e-10!13;UBERON:0001262!1.23e-10!13;UBERON:0004786!1.23e-10!13;UBERON:0004923!1.16e-07!24;UBERON:0003350!3.39e-07!9;UBERON:0004808!3.39e-07!9;UBERON:0001277!3.39e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.29e-20,15;UBERON:0001962,2.90e-14,2;UBERON:0001961,2.90e-14,2;UBERON:0001744,2.90e-14,2;UBERON:0004923,1.07e-12,24;UBERON:0001242,2.59e-12,13;UBERON:0001262,2.59e-12,13;UBERON:0004786,2.59e-12,13;UBERON:0002465,8.19e-10,3;UBERON:0000331,1.21e-09,3;UBERON:0002116,1.21e-09,3;UBERON:0001204,1.21e-09,3;UBERON:0001168,1.21e-09,3;UBERON:0003199,5.41e-08,1;UBERON:0002108,1.92e-07,4;UBERON:0003350,6.55e-07,9;UBERON:0004808,6.55e-07,9;UBERON:0001277,6.55e-07,9 | |||
|phase1_expression=0,1.39590163055744,0.454999239389536,1.51232105653415,2.00358291978539,0.503637815735669,0.700837921786577,0.129123323441576,0,0.468129052643987,0,0.239316476986009,0,0.437102012094987,0,0,0,0,0,0,0.765389611359628,0,0,3.19984845586813,4.35877634027623,1.14846392823004,0.430761996159075,1.29282739611533,4.94060890586572,1.51218077855958,0.443461021310609,0.635030673459631,0,0,0,0,0,0.418531630736908,0,0,0,0,0,0.881277725829041,0.709638518536602,0.550640256485045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0,0.289864488701678,0,0.679971333707751,0,0,0,0.983110940922263,0,0.519572009205738,2.12003744706204,0,1.28326477414318,0,0,0,0,0,1.7127581957859,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147610147979602,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0.172684981865896,0.144649058581512,1.50791283939272,1.08781136763742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165306911450672,0,0.259229946583586,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231867835620421 | |phase1_expression=0,1.39590163055744,0.454999239389536,1.51232105653415,2.00358291978539,0.503637815735669,0.700837921786577,0.129123323441576,0,0.468129052643987,0,0.239316476986009,0,0.437102012094987,0,0,0,0,0,0,0.765389611359628,0,0,3.19984845586813,4.35877634027623,1.14846392823004,0.430761996159075,1.29282739611533,4.94060890586572,1.51218077855958,0.443461021310609,0.635030673459631,0,0,0,0,0,0.418531630736908,0,0,0,0,0,0.881277725829041,0.709638518536602,0.550640256485045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0,0.289864488701678,0,0.679971333707751,0,0,0,0.983110940922263,0,0.519572009205738,2.12003744706204,0,1.28326477414318,0,0,0,0,0,1.7127581957859,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147610147979602,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0.172684981865896,0.144649058581512,1.50791283939272,1.08781136763742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165306911450672,0,0.259229946583586,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231867835620421 | ||
|short_description=p@chr4:41319351..41319353,+ | |||
}} | }} |
Latest revision as of 11:02, 5 August 2015
Short description: | p@chr4:41319351..41319353, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:41319351..41319353, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.73e-14 | 7 |
bone marrow macrophage | 4.00e-13 | 2 |
brush border epithelial cell | 4.12e-10 | 6 |
gut absorptive cell | 4.12e-10 | 6 |
enterocyte | 4.12e-10 | 6 |
M cell of gut | 5.12e-09 | 3 |
columnar/cuboidal epithelial cell | 9.62e-09 | 7 |
epithelial cell | 1.23e-08 | 25 |
monopoietic cell | 5.23e-07 | 4 |
myeloid leukocyte | 5.23e-07 | 4 |
phagocyte | 5.23e-07 | 4 |
monocyte | 5.23e-07 | 4 |
macrophage | 5.23e-07 | 4 |
tissue-resident macrophage | 5.23e-07 | 4 |
macrophage dendritic cell progenitor | 5.23e-07 | 4 |
monoblast | 5.23e-07 | 4 |
promonocyte | 5.23e-07 | 4 |
endo-epithelial cell | 6.12e-07 | 15 |
intestinal epithelial cell | 6.55e-07 | 9 |
epithelial cell of alimentary canal | 6.55e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.29e-20 | 15 |
gut-associated lymphoid tissue | 2.90e-14 | 2 |
mucosa-associated lymphoid tissue | 2.90e-14 | 2 |
lymphoid tissue | 2.90e-14 | 2 |
organ component layer | 1.07e-12 | 24 |
intestinal mucosa | 2.59e-12 | 13 |
wall of intestine | 2.59e-12 | 13 |
gastrointestinal system mucosa | 2.59e-12 | 13 |
lymphoid system | 8.19e-10 | 3 |
ileal mucosa | 1.21e-09 | 3 |
ileum | 1.21e-09 | 3 |
mucosa of small intestine | 1.21e-09 | 3 |
wall of small intestine | 1.21e-09 | 3 |
egg chamber | 5.41e-08 | 1 |
small intestine | 1.92e-07 | 4 |
epithelium of mucosa | 6.55e-07 | 9 |
gastrointestinal system epithelium | 6.55e-07 | 9 |
intestinal epithelium | 6.55e-07 | 9 |