FFCP PHASE1:Hg19::chr19:16606944..16606963,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:16606944..16606963,- to FFCP PHASE1:Hg19::chr19:16606944..16606963,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=125972 | |EntrezGene=125972 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20407 | |HGNC=20407 | ||
|TSSclassifier=strong | |||
|UniProt=Q96L12 | |UniProt=Q96L12 | ||
|association_with_transcript=39bp_to_ENST00000269881,NM_145046,uc002ned.2_5end | |||
|cluster_id=chr19:16606944..16606963,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_CALR3_5end | |||
|id=chr19:16606944..16606963,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002262;2.40e-08;2!CL:1000398;2.40e-08;2!CL:0002363;2.40e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,2.15e-08,2;CL:1000398,2.15e-08,2;CL:0002363,2.87e-08,2;CL:0000008,2.87e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000008;2.40e-08;2!UBERON:0009117;9.22e-07;10!UBERON:0005564;9.22e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;3.18e-15;4!DOID:1612;3.18e-15;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.56e-15,4;DOID:1612,2.56e-15,4 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001281;2.40e-08;2!UBERON:0003497;2.40e-08;2!UBERON:0003909;2.40e-08;2!UBERON:0003566;2.40e-08;2!UBERON:0003835;2.40e-08;2!UBERON:0001777;2.40e-08;2!UBERON:0000473;3.04e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,2.15e-08,2;UBERON:0003497,2.15e-08,2;UBERON:0003909,2.15e-08,2;UBERON:0003835,2.15e-08,2;UBERON:0003566,2.87e-08,2;UBERON:0001777,2.87e-08,2;UBERON:0000473,3.04e-08,8 | |||
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| ||
|short_description=p3@CALR3 | |||
}} | }} |
Latest revision as of 10:08, 16 September 2015
Short description: | p3@CALR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CALR3_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 39bp_to_ENST00000269881, NM_145046, uc002ned.2_5end |
EntrezGene: | CALR3 |
HGNC: | 20407 |
UniProt: | Q96L12 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 2.15e-08 | 2 |
endothelial cell of hepatic sinusoid | 2.15e-08 | 2 |
keratocyte | 2.87e-08 | 2 |
migratory cranial neural crest cell | 2.87e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 2.15e-08 | 2 |
abdomen blood vessel | 2.15e-08 | 2 |
sinusoid | 2.15e-08 | 2 |
abdominal segment blood vessel | 2.15e-08 | 2 |
head connective tissue | 2.87e-08 | 2 |
substantia propria of cornea | 2.87e-08 | 2 |
testis | 3.04e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.56e-15 | 4 |
breast cancer | 2.56e-15 | 4 |