FFCP PHASE1:Hg19::chr1:112933694..112933714,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:112933694..112933714,+ to FFCP PHASE1:Hg19::chr1:112933694..112933714,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:112933694..112933714,+ | |||
|description=CAGE_peak_at_chr1:112933694..112933714,+ | |||
|id=chr1:112933694..112933714,+ | |||
|ontology_enrichment_celltype=CL:0002139!9.03e-09!24;CL:0000115!2.16e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0002543;1.17e-27;6!CL:0000071;1.43e-22;18!CL:0002618;1.21e-20;3!CL:0002139;1.18e-16;24!CL:0002544;1.34e-10;6!CL:0000115;3.14e-09;36!CL:0000511;5.03e-08;1!CL:0002625;5.03e-08;1!CL:0000216;5.03e-08;1!CL:1000413;3.20e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002543,8.97e-28,6;CL:0000071,5.20e-23,18;CL:0002546,5.20e-23,18;CL:0002618,1.50e-20,3;CL:0002139,5.59e-17,24;CL:0002544,4.94e-11,6;CL:0000115,6.13e-11,36;CL:0002078,1.60e-08,45;CL:0000511,3.34e-08,1;CL:0002625,3.34e-08,1;CL:0000216,3.34e-08,1;CL:0000213,4.68e-08,58;CL:0000215,4.68e-08,58;CL:1000413,1.67e-07,9;CL:0000076,2.64e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;1.43e-22;18!UBERON:0009143;5.03e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000467!3.77e-11!625;UBERON:0000480!5.27e-11!626;UBERON:0000468!3.57e-10!659;UBERON:0001049!8.11e-08!57;UBERON:0005068!8.11e-08!57;UBERON:0006241!8.11e-08!57;UBERON:0007135!8.11e-08!57;UBERON:0002616!1.32e-07!59;UBERON:0002050!1.42e-07!605;UBERON:0005423!1.42e-07!605;UBERON:0000923!2.38e-07!604;UBERON:0005291!2.38e-07!604;UBERON:0006598!2.38e-07!604;UBERON:0002532!2.38e-07!604;UBERON:0004872!3.89e-07!84;UBERON:0000477!4.13e-07!286;UBERON:0000922!4.17e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;4.23e-23;22!UBERON:0004638;1.43e-22;18!UBERON:0001986;1.43e-22;18!UBERON:0004852;1.43e-22;18!UBERON:0006914;3.67e-20;25!UBERON:0001638;2.07e-18;9!UBERON:0003920;2.07e-18;9!UBERON:0004582;2.07e-18;9!UBERON:0000490;8.54e-14;33!UBERON:0002066;1.28e-12;5!UBERON:0010260;4.35e-12;9!UBERON:0000996;5.03e-08;1!UBERON:0001136;5.03e-08;1!UBERON:0001343;5.03e-08;1!UBERON:0004910;5.03e-08;1!UBERON:0004813;5.03e-08;1!UBERON:0003915;3.20e-07;9!UBERON:0004700;3.20e-07;9!UBERON:0001917;3.20e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000487,1.43e-23,22;UBERON:0004638,5.20e-23,18;UBERON:0001986,5.20e-23,18;UBERON:0004852,5.20e-23,18;UBERON:0006914,1.42e-20,25;UBERON:0001638,1.75e-18,9;UBERON:0003920,1.75e-18,9;UBERON:0004582,1.75e-18,9;UBERON:0002066,1.46e-12,5;UBERON:0010260,5.84e-12,9;UBERON:0004872,2.98e-11,83;UBERON:0007500,8.95e-10,59;UBERON:0001981,8.95e-10,59;UBERON:0004537,8.95e-10,59;UBERON:0006965,8.95e-10,59;UBERON:0000996,2.04e-08,1;UBERON:0000055,2.94e-08,68;UBERON:0001136,3.34e-08,1;UBERON:0001343,3.34e-08,1;UBERON:0004910,3.34e-08,1;UBERON:0005154,3.34e-08,1;UBERON:0005295,3.34e-08,1;UBERON:0004813,3.34e-08,1;UBERON:0005297,3.34e-08,1;UBERON:0005294,3.34e-08,1;UBERON:0010141,3.34e-08,1;UBERON:0005891,3.34e-08,1;UBERON:0003915,1.67e-07,9;UBERON:0004700,1.67e-07,9;UBERON:0001917,1.67e-07,9;UBERON:0002049,5.51e-07,78;UBERON:0007798,5.51e-07,78 | |||
|phase1_expression=0.181678379270557,0,0.845726424575827,0,0,0.872338524100369,0,0,0,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0,0,0,0,0.487932798790507,0.123121058076788,0.204000691244253,0.313454721478088,0,0.273748850145768,0.376627918784408,0.534893840235659,0.164201178899891,0.236132343941038,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0.671746422719773,0,0.257575567634187,0.290796477559129,0.377875943688809,0.485168122375632,0.232429036905685,0.411167888021826,0,0.28769239232215,0,0.236482229888585,0.344745680736619,0.645484683583826,0,0.188242339542605,0.272906150057846,0.449446968890169,0,0,0,0.659702600373432,0.398927315243264,0,0,0,0,0,0,0,0,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.722878304769133,0,0,0,0,0.661743720148475,0,0.175669571386252,0.130979075497713,0,0,0,0.348259474598534,0.132957960518865,0,0,0.371457501329565,1.98762407366705,1.72046919021225,0,0,0,0.275118041940067,0.835979866147242,0.516833518338658,0.71153252537342,0.33472061276467,0.402829317109147,0,0.976248230192678,0,1.62028389576352,1.16089646769304,1.12264686313085,1.68917220724983,1.53316637465883,0.949265659568129,1.46561395144326,0,0,0.436094052142534,0,0,0.529636723252875,0,0,0,1.06748995729705,0.24666754841716,0,0.404132016209064,0.163461903113459,0.454072282934794,0,0,0,0.570471821544449,0,0.23486899728753,0,0,0,0.368502951935304,0.103325781175765,0,0.247266929278557,0,0,0.505008341862199,0.500474079487857,0.277064115484183,0.438977620880838,0,0.600952235626387,0.113432183160021,0,0,0,0.600182192168805,0.515262646192195,0,0,0,0.194874010322397,0,0.184099797284599,0.484938170456436,0,0.503760491138201,0,0.966304265816484,0.818238361772504,0,0,0,0,0,0,0,0,0.643240938192885,1.38134921352481,0.464367928031979,0,0.118306800039844,0,0,0.110293972732394,0.653638332277218,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.100528972411631,0.277765335475589,0,0,0,0.463721619900307,0.117408694235822,0.433099343283221,0.462985512576611,0.380508304469197,0,0.858486162094873,0,0.468008530278475,0.594524649154913,0,0.671928512795438,0.850650583454319,0,0,0,0.492663237895943,0.088048434013226,0,1.00883967391873,1.2624243342638,0.126995788584338,0.763976851116555,1.17217447210047,0,0.205654985406647,0,0.285826432630578,0.224262168690721,0.87192013766656,0.2933531432838,0,3.57656445851882,0,0,0,0.257207374262142,1.41849132023278,0,0.142977993658148,0,0,0.65147236858747,0,0,0,0,0.199945982364114,0,0.502257091432126,0,0.239624855491583,0,0,0.579125226670317,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0.24538298343828,0,0,0.415941723061614,0.178428988797162,0.157702415033935,0.234282829985426,0.300946099727719,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0.215714200818617,0,0.303127571446259,1.66435439510497,0.30239029332968,0.248107807818777,0.460385919864187,0,0,1.02341449813341,0.321707842287215,0,0.308419387605311,0,0.246381468041427,0,0,0,0.802025881213139,0.184161977871793,0.114814448164607,0,0.131124414959424,0,0.15403067420883,0,0,0.527758144464379,0,0.170093705276516,0.863663664408557,0,0,0.501689773854853,0,0,0,0,0,0,0.656029291399411,0,1.13345112812495,0.0915694648183434,0.330037999682352,0.574265537996172,0,1.6068392984416,0.290012154876366,0.616194468458578,0.15350367472613,0.137836572484531,0.429680979473094,0.290033387828457,0.170453254832202,0.178064071293475,0.495854746082934,0.192190067365106,0.382838137483752,0.10115778085555,0,0,0.6970372701606,0.616067160352178,0,0,0,0.286249773483982,0.372158369359667,0,0.38126038784765,0,0.42793898803392,0,0,0.179872457583315,0.54907405947211,0,0,0,0,0,0.731140468893853,2.11300293513511,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0.202910376962704,0.6196469961995,1.12678241012897,0.143411352204052,0.0982490410131212,0,0.354761064070598,0,0.329294892959902,0.379473173765715,0.349934720244983,0.192444225451024,0,0,1.03558180854457,0,1.68471475667626,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0.439524537815682,0,0.334330152832435,0,0,0.890894042497916,0,0,0.562677665642051,0.111308705022906,0,0,0.996239941255349,0.276283915531148,0.503865495708552,0.306806047506464,0.123084805461069,0.622079175323615,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.723578631752448,1.52581736317083,0.442317039724898,0,0.219385397153973,0,0,0.538651809526579,0.227884111694002,0,0.0897576444097721,0,0.31900115973192,0.457987967009312,0.533034776018635,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0.176915129006678,0,0,0.247127877893006,0.104421949505455,0.337005664903385,0,0.234264445725339,0,0,0,0.394584402849391,0,0.30607276163049,0.126373159256976,0,0.103688191397247,0,0,0,0,0,0.832048038078832,0,0.195984794828755,0.0870592065804026,0,0.687944129886466,0.09675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| ||
|short_description=p@chr1:112933694..112933714,+ | |||
}} | }} |
Latest revision as of 19:46, 27 July 2015
Short description: | p@chr1:112933694..112933714, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:112933694..112933714, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vein endothelial cell | 8.97e-28 | 6 |
blood vessel endothelial cell | 5.20e-23 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.20e-23 | 18 |
endothelial cell of umbilical vein | 1.50e-20 | 3 |
endothelial cell of vascular tree | 5.59e-17 | 24 |
aortic endothelial cell | 4.94e-11 | 6 |
endothelial cell | 6.13e-11 | 36 |
meso-epithelial cell | 1.60e-08 | 45 |
androgen binding protein secreting cell | 3.34e-08 | 1 |
seminiferous tubule epithelial cell | 3.34e-08 | 1 |
Sertoli cell | 3.34e-08 | 1 |
lining cell | 4.68e-08 | 58 |
barrier cell | 4.68e-08 | 58 |
endothelial cell of artery | 1.67e-07 | 9 |
squamous epithelial cell | 2.64e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
simple squamous epithelium | 1.43e-23 | 22 |
blood vessel endothelium | 5.20e-23 | 18 |
endothelium | 5.20e-23 | 18 |
cardiovascular system endothelium | 5.20e-23 | 18 |
squamous epithelium | 1.42e-20 | 25 |
vein | 1.75e-18 | 9 |
venous blood vessel | 1.75e-18 | 9 |
venous system | 1.75e-18 | 9 |
umbilical vein | 1.46e-12 | 5 |
umbilical blood vessel | 5.84e-12 | 9 |
splanchnic layer of lateral plate mesoderm | 2.98e-11 | 83 |
epithelial tube open at both ends | 8.95e-10 | 59 |
blood vessel | 8.95e-10 | 59 |
blood vasculature | 8.95e-10 | 59 |
vascular cord | 8.95e-10 | 59 |
vagina | 2.04e-08 | 1 |
vessel | 2.94e-08 | 68 |
mesothelium | 3.34e-08 | 1 |
seminiferous tubule of testis | 3.34e-08 | 1 |
epithelium of male gonad | 3.34e-08 | 1 |
epithelial cord | 3.34e-08 | 1 |
sex cord | 3.34e-08 | 1 |
seminiferous tubule epithelium | 3.34e-08 | 1 |
testis sex cord | 3.34e-08 | 1 |
genital ridge | 3.34e-08 | 1 |
primitive sex cord of indifferent gonad | 3.34e-08 | 1 |
coelomic epithelium | 3.34e-08 | 1 |
endothelial tube | 1.67e-07 | 9 |
arterial system endothelium | 1.67e-07 | 9 |
endothelium of artery | 1.67e-07 | 9 |
vasculature | 5.51e-07 | 78 |
vascular system | 5.51e-07 | 78 |