FFCP PHASE1:Hg19::chr1:155294264..155294332,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:155294264..155294332,+ to FFCP PHASE1:Hg19::chr1:155294264..155294332,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23623 | |EntrezGene=23623 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17153 | |HGNC=17153 | ||
|TSSclassifier=strong | |||
|UniProt=Q68CX2 | |UniProt=Q68CX2 | ||
|association_with_transcript=0bp_to_ENST00000368349,ENST00000468764,ENST00000471876,ENST00000479924,ENST00000490373,ENST00000492536,uc001fkn.2,uc001fko.2_5end | |||
|cluster_id=chr1:155294264..155294332,+ | |||
|description=CAGE_peak_1_at_RUSC1_5end | |||
|id=chr1:155294264..155294332,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.18e-32!679;CL:0000004!1.18e-32!679;CL:0000255!1.18e-32!679;CL:0000012!4.08e-32!682;CL:0000066!5.56e-31!254;CL:0000003!1.81e-25!722;CL:0002321!1.77e-19!248;CL:0000063!5.10e-19!578;CL:0000220!6.49e-19!246;CL:0000144!4.16e-17!625;CL:0002371!4.57e-15!591;CL:0000055!3.43e-10!180;CL:0002076!1.56e-08!43;CL:0002368!2.34e-08!13;CL:1000497!8.40e-08!18;CL:0002518!8.40e-08!18;CL:1000449!1.78e-07!16;CL:0000223!2.17e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:1000497;1.68e-08;17!CL:0002518;1.68e-08;17!CL:0002368;2.02e-08;13!CL:1000449;3.25e-08;15!CL:0002681;3.38e-07;12!CL:0002584;3.38e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.97e-31,253;CL:0002321,1.30e-19,250;CL:1000497,1.76e-08,17;CL:0002518,1.76e-08,17;CL:0002076,2.27e-08,42;CL:0002368,2.34e-08,13;CL:1000449,3.41e-08,15;CL:0000223,3.13e-07,58;CL:0002681,3.45e-07,12;CL:0002584,3.45e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!5.76e-10!235;DOID:14566!3.12e-09!239;DOID:305!1.03e-08!106;DOID:0050687!1.58e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.75e-10,235;DOID:14566,3.12e-09,239;DOID:305,1.03e-08,106;DOID:0050687,1.58e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0003104!8.46e-09!238;UBERON:0009142!8.46e-09!238;UBERON:0006554!8.54e-09!44;UBERON:0001008!2.77e-08!45;UBERON:0004211!1.78e-07!16;UBERON:0001285!1.78e-07!16;UBERON:0007684!1.78e-07!16;UBERON:0003220!1.78e-07!16;UBERON:0004208!1.78e-07!16;UBERON:0009569!2.17e-07!113;UBERON:0000065!2.34e-07!53;UBERON:0001004!4.35e-07!72;UBERON:0002100!5.15e-07!216;UBERON:0000072!5.59e-07!46;UBERON:0004119!7.47e-07!169;UBERON:0000925!7.47e-07!169;UBERON:0006595!7.47e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.02e-09;30!UBERON:0001008;1.02e-09;30!UBERON:0006555;3.25e-08;15!UBERON:0004819;3.25e-08;15!UBERON:0001285;3.25e-08;15!UBERON:0007684;3.25e-08;15!UBERON:0002113;4.16e-08;24!UBERON:0011143;4.16e-08;24!UBERON:0000353;9.78e-08;15!UBERON:0005911;2.08e-07;36!UBERON:0001225;3.38e-07;12!UBERON:0008987;3.38e-07;12!UBERON:0001851;9.88e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,2.45e-10,47;UBERON:0001008,8.81e-10,48;UBERON:0004211,3.41e-08,15;UBERON:0009773,3.41e-08,15;UBERON:0001231,3.41e-08,15;UBERON:0001285,3.41e-08,15;UBERON:0007684,3.41e-08,15;UBERON:0004208,3.41e-08,15;UBERON:0000353,1.14e-07,15;UBERON:0002100,2.18e-07,199;UBERON:0009569,3.02e-07,112;UBERON:0001225,3.45e-07,12;UBERON:0008987,3.45e-07,12;UBERON:0000065,4.35e-07,54;UBERON:0004119,4.49e-07,160;UBERON:0000925,4.49e-07,160;UBERON:0006595,4.49e-07,160;UBERON:0006555,5.32e-07,16;UBERON:0004819,5.32e-07,16;UBERON:0001004,6.14e-07,74;UBERON:0001851,9.88e-07,15 | |||
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| ||
|short_description=p1@RUSC1 | |||
}} | }} |
Latest revision as of 12:41, 17 September 2015
Short description: | p1@RUSC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RUSC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000368349, ENST00000468764, ENST00000471876, ENST00000479924, ENST00000490373, ENST00000492536, uc001fkn.2, uc001fko.2_5end |
EntrezGene: | RUSC1 |
HGNC: | 17153 |
UniProt: | Q68CX2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.97e-31 | 253 |
embryonic cell | 1.30e-19 | 250 |
kidney cell | 1.76e-08 | 17 |
kidney epithelial cell | 1.76e-08 | 17 |
endo-epithelial cell | 2.27e-08 | 42 |
respiratory epithelial cell | 2.34e-08 | 13 |
epithelial cell of nephron | 3.41e-08 | 15 |
endodermal cell | 3.13e-07 | 58 |
kidney cortical cell | 3.45e-07 | 12 |
renal cortical epithelial cell | 3.45e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 2.45e-10 | 47 |
renal system | 8.81e-10 | 48 |
nephron epithelium | 3.41e-08 | 15 |
renal tubule | 3.41e-08 | 15 |
nephron tubule | 3.41e-08 | 15 |
nephron | 3.41e-08 | 15 |
uriniferous tubule | 3.41e-08 | 15 |
nephrogenic mesenchyme | 3.41e-08 | 15 |
parenchyma | 1.14e-07 | 15 |
trunk | 2.18e-07 | 199 |
subdivision of trunk | 3.02e-07 | 112 |
cortex of kidney | 3.45e-07 | 12 |
renal parenchyma | 3.45e-07 | 12 |
respiratory tract | 4.35e-07 | 54 |
endoderm-derived structure | 4.49e-07 | 160 |
endoderm | 4.49e-07 | 160 |
presumptive endoderm | 4.49e-07 | 160 |
excretory tube | 5.32e-07 | 16 |
kidney epithelium | 5.32e-07 | 16 |
respiratory system | 6.14e-07 | 74 |
cortex | 9.88e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.75e-10 | 235 |
disease of cellular proliferation | 3.12e-09 | 239 |
carcinoma | 1.03e-08 | 106 |
cell type cancer | 1.58e-07 | 143 |