FFCP PHASE1:Hg19::chr1:236140898..236140923,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:236140898..236140923,+ to FFCP PHASE1:Hg19::chr1:236140898..236140923,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-244bp_to_CU692273_5end | |||
|cluster_id=chr1:236140898..236140923,+ | |||
|coexpression_cluster_id=C932 | |||
|description=CAGE_peak_1_at_CU692273_5end | |||
|id=chr1:236140898..236140923,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.02e-13!180;CL:0000222!7.35e-08!119;CL:0000057!2.17e-07!75;CL:0000183!6.69e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002564;1.61e-12;3!CL:0002195;2.29e-09;2!CL:0002571;2.29e-09;2!CL:0002561;3.70e-09;2!CL:0002575;1.08e-08;2!CL:0002617;2.49e-08;2!CL:1000487;2.49e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,8.72e-13,3;CL:0002195,2.09e-09,2;CL:0002571,2.09e-09,2;CL:0002561,3.65e-09,2;CL:0002617,1.13e-08,2;CL:0002575,1.27e-08,2;CL:1000487,2.00e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000490!4.46e-08!138;UBERON:0005256!2.57e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;1.13e-12;5!UBERON:0002216;1.13e-12;5!UBERON:0011134;1.13e-12;5!UBERON:0002209;1.13e-12;5!UBERON:0002213;1.13e-12;5!UBERON:0007844;1.13e-12;5!UBERON:0011138;1.13e-12;5!UBERON:0001130;1.13e-12;5!UBERON:0001066;1.13e-12;5!UBERON:0001468;1.13e-12;5!UBERON:0002242;1.61e-12;3!UBERON:0004905;7.63e-12;8!UBERON:0000982;7.63e-12;8!UBERON:0004770;7.63e-12;8!UBERON:0005933;3.70e-09;2!UBERON:0005942;3.70e-09;2!UBERON:0005932;3.70e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,4.37e-13,5;UBERON:0002216,4.37e-13,5;UBERON:0011134,4.37e-13,5;UBERON:0002209,4.37e-13,5;UBERON:0002213,4.37e-13,5;UBERON:0005856,4.37e-13,5;UBERON:0005866,4.37e-13,5;UBERON:0005863,4.37e-13,5;UBERON:0007844,4.37e-13,5;UBERON:0011138,4.37e-13,5;UBERON:0001130,4.37e-13,5;UBERON:0001066,4.37e-13,5;UBERON:0001468,4.37e-13,5;UBERON:0002242,8.72e-13,3;UBERON:0003068,8.72e-13,3;UBERON:0002328,8.72e-13,3;UBERON:0004880,8.72e-13,3;UBERON:0004905,4.13e-12,8;UBERON:0000982,4.13e-12,8;UBERON:0004770,4.13e-12,8;UBERON:0005933,3.65e-09,2;UBERON:0005942,3.65e-09,2;UBERON:0005932,3.65e-09,2;UBERON:0003104,5.75e-07,160;UBERON:0009142,5.75e-07,160 | |||
|phase1_expression=1.45342703416445,1.71280419112787,0.845726424575827,0,0.446961094427288,0.872338524100369,0,3.15859936713415,5.74608382039645,0,0,0,0,1.73272894144065,0,0.672325146451775,0.602694528023977,0.730310090387373,1.46379839637152,0.123121058076788,0.204000691244253,0,0,0,0.251085279189606,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0,0,0.398927315243264,0,0.290209238628584,0.56738522469114,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,1.0843174571537,0,1.44846518960824,0,0.486634870302636,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.550236083880135,0,0.258416759169329,0,0.66944122552934,0.805658634218294,0,6.10155143870424,0.735326160691737,0.81014194788176,0.267899184852239,0,0.450445921933289,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.397227542439656,1.43418310374407,1.41867352879343,0,0,0.24666754841716,0,0.269421344139376,0.653847612453835,1.05950199351452,0.576175924479999,0.468642863667593,0.312160076830321,0,1.49448680551801,0,0.323745888736263,0,0.408308342509787,0.122834317311768,0.309977343527296,0,0,0,0.718618141816238,0,0.375355559615893,0,0,0,0,0.340296549480063,1.4351170855109,0.85422955527427,0.211931901159562,1.50045548042201,0.206105058476878,0.772921620136887,0,0.168776332241266,0.487185025805993,0.504867548488229,0.184099797284599,0.161646056818812,0.355009592516614,0.201504196455281,0.508681776931463,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,3.25057549622385,2.16563844500876,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0,0.857839051492628,0,0,0.100528972411631,0,0.325808305310325,0,0,0.579652024875384,0.234817388471643,1.15493158208859,0.925971025153221,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317489471460845,0,0,3.4214489204541,0.411309970813294,0,0.571652865261156,0.224262168690721,0.43596006883328,1.39342743059805,0.129271715757778,0,0,1.86156681609409,2.08014873822732,0.771622122786426,2.83698264046557,0,7.86378965119812,7.05408087008876,0,0.65147236858747,3.55391948742546,0,0,0,0.099972991182057,0,0,0,0,1.14861935834114,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,2.94459580125936,4.50153468953709,1.62759014219841,1.03985430765404,1.60586089917446,0.788512075169673,0.702848489956279,0,0,2.0694614258501,0,0.368738337083406,0.781952530212746,1.37060810223918,2.05886054286514,0,0.215714200818617,0,0,0,0,0,0.920771839728375,0,0.128139149255701,0,0.64341568457443,0,0,0.532685175939381,0.246381468041427,0,0.232420756919918,0.241718899183244,0,0.0920809889358963,0.34444334449382,0.364182336013434,0.655622074797121,0,0.308061348417659,0,0,0.211103257785751,0,0.680374821106063,0.215915916102139,3.08454505380579,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.206082023295445,0.183138929636687,0.165018999841176,0,0,1.6068392984416,0.773365746336976,0.154048617114644,0.460511024178389,0.137836572484531,0.429680979473094,1.0151168573996,0.511359764496605,1.24644849905432,0,0,0,0,0,0,0,0,0,0,0.37064843820784,0,0.744316738719335,0.316379424718726,0.190630193923825,0.511795582622668,0.42793898803392,0,0,0.539617372749944,0.274537029736055,0.589062011728432,0,0,0,0,1.94970791705028,0,1.09199929126389,1.97967604735198,0,1.10273068709225,0,0,0.578775534266688,0.655894752046633,0,0,0,1.29070216983646,0.589494246078727,0,0,1.26664581178598,0.987884678879706,0,1.39973888097993,0,0,0,0.188287601553558,0,0,0,0.229723400206959,0,0,0,0.238231775457789,0,0,1.08006287447623,0,0.747768497892312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0.614481528616916,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0.41827123283581,0,0,0.23056390438806,0.538545866458633,0.869178975376065,0,0.0915975934018623,0,0,0,0,0,0,0,0,0.317873157960757,0,0,0,0.432777279484182,0,0,0,0,0,0,0.067401132980677,1.60515529459758,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,1.12990370390266,0.411125773940253,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0.313808538937,0.101998217636322,0.866851769704557,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.53746777989381,0.720599767084807,0,0.709048640765013,0.412079291905832,0.674035438541849,0.0984274815147488,0,0,0,0.160753148465019,0.412618309791701,0,0,0,0,0,0.236417121897595,0.944182586429966,0,0,0,0,0,0,0,0,0,0,0,0,0.339936274560377,0.293104467356165,1.32506888912221,0,0,0,0,0.213574825135389,0.157204305099666,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0.124980407962107,0.151649117541648,0,0.470531639396343,0,0,0.298509605773748,0.467426619694449,0,0,0,0,0,0.302461847526478,0.777186002913902,0.147855149989634,0.159296767163702,0,0.465788870628778,0.829412415681711,0,0,0.150257608997218,0,0,0.363697318405119,0.214821114084977,0.464033759878494,1.19428766609585,0.400027764663154,0.343395705182793,0.336749488765919,0,0,0,0,0.226705925512272,0.231522474323834,0.244736704506468,0.179088841081487,0,0,0,0,0.675769762612291,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,1.05802783107205,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0.451261970095544,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.992422356778588,0,0,0,0,0,0,0.177404740325278,0.230467975111559,0,0,0.131545547125698,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0.142953088353313,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.231522474323834,0.655678681511872,0,0.245148321753905,0,0,0,0,0,0.0939839179798536,0.45120521581504,0,0,0,0,0,0,0.143339583151451,0,0,0,0.5290268405154,0.743990036333503,0.462175628631418,0,0,0.109265571963696,0,0.203977659483963,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0.0620747142958579,0.672791175483681,0.0636471582781649,0.606351566874658,0,0.684466602170562,0,0,0,0.325613074443898,0.106727345877715,0,0.179650404213174,0,0.244482888365733,0,0,0,0.320568492303233 | |phase1_expression=1.45342703416445,1.71280419112787,0.845726424575827,0,0.446961094427288,0.872338524100369,0,3.15859936713415,5.74608382039645,0,0,0,0,1.73272894144065,0,0.672325146451775,0.602694528023977,0.730310090387373,1.46379839637152,0.123121058076788,0.204000691244253,0,0,0,0.251085279189606,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0,0,0.398927315243264,0,0.290209238628584,0.56738522469114,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,1.0843174571537,0,1.44846518960824,0,0.486634870302636,0.0945348171640679,0,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.550236083880135,0,0.258416759169329,0,0.66944122552934,0.805658634218294,0,6.10155143870424,0.735326160691737,0.81014194788176,0.267899184852239,0,0.450445921933289,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.397227542439656,1.43418310374407,1.41867352879343,0,0,0.24666754841716,0,0.269421344139376,0.653847612453835,1.05950199351452,0.576175924479999,0.468642863667593,0.312160076830321,0,1.49448680551801,0,0.323745888736263,0,0.408308342509787,0.122834317311768,0.309977343527296,0,0,0,0.718618141816238,0,0.375355559615893,0,0,0,0,0.340296549480063,1.4351170855109,0.85422955527427,0.211931901159562,1.50045548042201,0.206105058476878,0.772921620136887,0,0.168776332241266,0.487185025805993,0.504867548488229,0.184099797284599,0.161646056818812,0.355009592516614,0.201504196455281,0.508681776931463,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,3.25057549622385,2.16563844500876,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0,0.857839051492628,0,0,0.100528972411631,0,0.325808305310325,0,0,0.579652024875384,0.234817388471643,1.15493158208859,0.925971025153221,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317489471460845,0,0,3.4214489204541,0.411309970813294,0,0.571652865261156,0.224262168690721,0.43596006883328,1.39342743059805,0.129271715757778,0,0,1.86156681609409,2.08014873822732,0.771622122786426,2.83698264046557,0,7.86378965119812,7.05408087008876,0,0.65147236858747,3.55391948742546,0,0,0,0.099972991182057,0,0,0,0,1.14861935834114,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,2.94459580125936,4.50153468953709,1.62759014219841,1.03985430765404,1.60586089917446,0.788512075169673,0.702848489956279,0,0,2.0694614258501,0,0.368738337083406,0.781952530212746,1.37060810223918,2.05886054286514,0,0.215714200818617,0,0,0,0,0,0.920771839728375,0,0.128139149255701,0,0.64341568457443,0,0,0.532685175939381,0.246381468041427,0,0.232420756919918,0.241718899183244,0,0.0920809889358963,0.34444334449382,0.364182336013434,0.655622074797121,0,0.308061348417659,0,0,0.211103257785751,0,0.680374821106063,0.215915916102139,3.08454505380579,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.206082023295445,0.183138929636687,0.165018999841176,0,0,1.6068392984416,0.773365746336976,0.154048617114644,0.460511024178389,0.137836572484531,0.429680979473094,1.0151168573996,0.511359764496605,1.24644849905432,0,0,0,0,0,0,0,0,0,0,0.37064843820784,0,0.744316738719335,0.316379424718726,0.190630193923825,0.511795582622668,0.42793898803392,0,0,0.539617372749944,0.274537029736055,0.589062011728432,0,0,0,0,1.94970791705028,0,1.09199929126389,1.97967604735198,0,1.10273068709225,0,0,0.578775534266688,0.655894752046633,0,0,0,1.29070216983646,0.589494246078727,0,0,1.26664581178598,0.987884678879706,0,1.39973888097993,0,0,0,0.188287601553558,0,0,0,0.229723400206959,0,0,0,0.238231775457789,0,0,1.08006287447623,0,0.747768497892312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0.614481528616916,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0.41827123283581,0,0,0.23056390438806,0.538545866458633,0.869178975376065,0,0.0915975934018623,0,0,0,0,0,0,0,0,0.317873157960757,0,0,0,0.432777279484182,0,0,0,0,0,0,0.067401132980677,1.60515529459758,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,1.12990370390266,0.411125773940253,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0.313808538937,0.101998217636322,0.866851769704557,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.53746777989381,0.720599767084807,0,0.709048640765013,0.412079291905832,0.674035438541849,0.0984274815147488,0,0,0,0.160753148465019,0.412618309791701,0,0,0,0,0,0.236417121897595,0.944182586429966,0,0,0,0,0,0,0,0,0,0,0,0,0.339936274560377,0.293104467356165,1.32506888912221,0,0,0,0,0.213574825135389,0.157204305099666,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0.124980407962107,0.151649117541648,0,0.470531639396343,0,0,0.298509605773748,0.467426619694449,0,0,0,0,0,0.302461847526478,0.777186002913902,0.147855149989634,0.159296767163702,0,0.465788870628778,0.829412415681711,0,0,0.150257608997218,0,0,0.363697318405119,0.214821114084977,0.464033759878494,1.19428766609585,0.400027764663154,0.343395705182793,0.336749488765919,0,0,0,0,0.226705925512272,0.231522474323834,0.244736704506468,0.179088841081487,0,0,0,0,0.675769762612291,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,1.05802783107205,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0.451261970095544,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.992422356778588,0,0,0,0,0,0,0.177404740325278,0.230467975111559,0,0,0.131545547125698,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0.142953088353313,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.231522474323834,0.655678681511872,0,0.245148321753905,0,0,0,0,0,0.0939839179798536,0.45120521581504,0,0,0,0,0,0,0.143339583151451,0,0,0,0.5290268405154,0.743990036333503,0.462175628631418,0,0,0.109265571963696,0,0.203977659483963,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0.0620747142958579,0.672791175483681,0.0636471582781649,0.606351566874658,0,0.684466602170562,0,0,0,0.325613074443898,0.106727345877715,0,0.179650404213174,0,0.244482888365733,0,0,0,0.320568492303233 | ||
|short_description=p1@CU692273 | |||
}} | }} |
Latest revision as of 05:25, 28 July 2015
Short description: | p1@CU692273 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CU692273_5end |
Coexpression cluster: | C932_Mesenchymal_Adipocyte_Endothelial_Fibroblast_Renal_Pericytes_Smooth |
Association with transcript: | -244bp_to_CU692273_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 8.72e-13 | 3 |
hepatic stem cell | 2.09e-09 | 2 |
hepatic mesenchymal stem cell | 2.09e-09 | 2 |
outer root sheath cell | 3.65e-09 | 2 |
adipocyte of breast | 1.13e-08 | 2 |
central nervous system pericyte | 1.27e-08 | 2 |
smooth muscle cell of prostate | 2.00e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 4.37e-13 | 5 |
symphysis | 4.37e-13 | 5 |
nonsynovial joint | 4.37e-13 | 5 |
fibrous joint | 4.37e-13 | 5 |
cartilaginous joint | 4.37e-13 | 5 |
developing mesenchymal condensation | 4.37e-13 | 5 |
pre-cartilage condensation | 4.37e-13 | 5 |
cartilaginous condensation | 4.37e-13 | 5 |
cartilage element | 4.37e-13 | 5 |
post-cranial axial skeletal system | 4.37e-13 | 5 |
vertebral column | 4.37e-13 | 5 |
intervertebral disk | 4.37e-13 | 5 |
intervertebral joint | 4.37e-13 | 5 |
nucleus pulposus | 8.72e-13 | 3 |
axial mesoderm | 8.72e-13 | 3 |
notochord | 8.72e-13 | 3 |
chordamesoderm | 8.72e-13 | 3 |
articulation | 4.13e-12 | 8 |
skeletal joint | 4.13e-12 | 8 |
articular system | 4.13e-12 | 8 |
hair root sheath | 3.65e-09 | 2 |
hair outer root sheath | 3.65e-09 | 2 |
bulb of hair follicle | 3.65e-09 | 2 |
mesenchyme | 5.75e-07 | 160 |
entire embryonic mesenchyme | 5.75e-07 | 160 |