FFCP PHASE1:Hg19::chr20:50418128..50418147,-: Difference between revisions
From FANTOM5_SSTAR
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57167 | |EntrezGene=57167 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15924 | |HGNC=15924 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-3bp_to_ENST00000483130_5end | |||
|cluster_id=chr20:50418128..50418147,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_2_at_SALL4_5end | |||
|id=chr20:50418128..50418147,- | |||
|ontology_enrichment_celltype=CL:0000039!8.19e-10!7;CL:0000586!8.19e-10!7;CL:0000066!3.25e-09!254;CL:0002322!5.54e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.27e-26;7!CL:0000586;1.27e-26;7!CL:0002322;3.69e-21;5!CL:0000148;7.45e-10;10!CL:0002321;2.52e-09;15!CL:0000147;6.17e-07;14!CL:0000540;9.12e-07;6!CL:0000404;9.12e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,9.75e-27,7;CL:0000586,9.75e-27,7;CL:0002322,3.78e-21,5;CL:0000148,7.89e-10,10;CL:0000541,7.89e-10,10;CL:0000147,6.42e-07,14;CL:0000540,9.04e-07,6;CL:0000031,9.04e-07,6;CL:0000404,9.04e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.66e-10;10!UBERON:0005564;7.66e-10;10!CL:0000031;9.12e-07;6 | |||
|ontology_enrichment_disease=DOID:0050687!3.58e-19!143;DOID:305!9.30e-17!106;DOID:3095!3.16e-10!22;DOID:2994!3.16e-10!22;DOID:162!9.57e-08!235;DOID:14566!3.26e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:3095;9.63e-23;22!DOID:2994;9.63e-23;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.60e-23,22;DOID:2994,5.60e-23,22;DOID:0050687,5.62e-14,143;DOID:305,5.87e-12,106;DOID:162,2.64e-07,235;DOID:14566,5.10e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0005911!1.47e-07!82;UBERON:0001007!3.06e-07!155;UBERON:0001555!3.06e-07!155;UBERON:0007026!3.06e-07!155;UBERON:0003929!5.50e-07!54;UBERON:0004119!8.69e-07!169;UBERON:0000925!8.69e-07!169;UBERON:0006595!8.69e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.21e-08;8!UBERON:0000922;6.15e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.25e-08,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,1.14494394852423,0.410623275218653,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0.312160076830321,0,0,0.23486899728753,0.161872944368132,0.140450806702248,0,0.245668634623536,0,0,0.247266929278557,0,0,0,0.625592599359821,0.554128230968366,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0.169560592310488,0,0,0,25.9803994056038,23.1927094562599,17.5452853732973,12.7503097668906,17.1578178595427,14.2341170039574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,6.64137568132813,0.171567810298526,0,0,0,0.0925884451585296,0.325808305310325,1.03993478527958,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0.308482478109971,1.20137223137567,2.85826432630578,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0,0.117141414992713,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0.482561763430822,0,0,0,0,0,0,10.0313343161046,0.200506470303285,0.0920809889358963,0,0,0,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0.522870902049801,0,0,0,0.103041011647722,0,0.165018999841176,0,0,0,0.290012154876366,0.308097234229289,0.15350367472613,0.137836572484531,0.322260734604821,0,0.0852266274161009,0.0890320356467374,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0.823611089208164,0.706874414074119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0.379473173765715,1.39973888097993,0.0962221127255121,0,0,0.0941438007767792,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,9.18687011696269,25.9869560921107,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614481528616916,0.447352215784832,0.166849141711909,0,0,0,0,0,0,0,0,1.33496573924465,0,0,0,0,0,0,0,0.111308705022906,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,1.30213880542617,0,0,0.227586896570999,0.254253650292766,0,0,0,0.347249989866585,0.885741385813839,0,0,0,0,0,0,0,0,0.113942055847001,1.38338342632836,1.43612231055635,9.88691084490273,0,0,0,0,0,0,0,0,0,0,0,0,0,6.2195351430934,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0.782658475728359,0,0,1.20990716048664,0,0.063186579628488,0.150323419414493,0.207376382794494,0,0,0,0,0,0,0,0.0979923974143777,2.17648016451006,0,0,0.290268993867255,0.511625219603299,0.0821154570532092,0,0,0,0,0,0,6.4531956302485,0.0801588202515337,0,0.999048047910651,1.00863292007874,1.03082936549324,6.34901492089269,0,0.124252535565433,0.235694034616795,0,0,0,0,0,0,1.27746588066972,0,0,0.279282401272254,0,0,0.399358000997982,0,0.223171457441873,0,0.360299883542404,8.15471646692177,0.236349546921671,0.0824158583811665,0.13480708770837,0.492137407573744,0,0,0,11.2527203925513,13.0662464767372,14.9558521690507,0.2249738915515,0,0,0,0,0.262272940674991,1.16160370171347,0.35857467866569,0.575745591958336,0,0,0,0,0,0,0,0,0,0.113312091520126,0,2.65013777824443,0,0,0.342173675768659,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0.941063278792687,0,0,0,0.233713309847224,0,0,0.251567901752575,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,1.47463745252232,0,0,0,0,0,0,0.139879507719444,0,1.66262682694747,0,0.157265941855896,0.109209638192014,0,0,0,0,0,0.552032215008773,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0.115525666150338,0,0,0,0,0,0,0.261906694481422,0.163771917510097,0.147856086217045,0.0675375846183947,0,0,0,0,0,0,0.879356221798103,0.766574565837572,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0.078493092850514,0,1.40136081656895,0,0,0,0.0714765441766563,0.632054446930906,2.20858708199438,0.521574816907738,0,0,0,0,0,0,0,0,1.14553434272025,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0.237840181555137,0,0.109940516745429,0,0,0.218559560503957,0.940634592723046,0,0,0,0,0.4226557275834,0.169927114687817,0,0,0,0,1.41157948686277,0,0,0,0,0.631086248772738,0.0679914901909147,0,0,0,0,0,5.55132269274347,3.49649830283826,4.18105053337742,3.26364255174342,8.28373956323238,3.30821638325442,15.5438674361273,0.378893491091197,0.535928260312357,0,0,0.213233981900981,0.714193294391221,0,0.0620747142958579,0.784923038064294,0.190941474834495,1.41482032270754,0,0,0,0.0717222053926763,0,1.95367844666339,0,1.9307228228694,0,2.34640942403454,0,0,0,0,0 | 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| ||
|short_description=p2@SALL4 | |||
}} | }} |
Latest revision as of 23:54, 16 September 2015
Short description: | p2@SALL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SALL4_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -3bp_to_ENST00000483130_5end |
EntrezGene: | SALL4 |
HGNC: | 15924 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 9.75e-27 | 7 |
germ cell | 9.75e-27 | 7 |
embryonic stem cell | 3.78e-21 | 5 |
melanocyte | 7.89e-10 | 10 |
melanoblast | 7.89e-10 | 10 |
pigment cell | 6.42e-07 | 14 |
neuron | 9.04e-07 | 6 |
neuroblast | 9.04e-07 | 6 |
electrically signaling cell | 9.04e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
testis | 3.25e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.60e-23 | 22 |
germ cell cancer | 5.60e-23 | 22 |
cell type cancer | 5.62e-14 | 143 |
carcinoma | 5.87e-12 | 106 |
cancer | 2.64e-07 | 235 |
disease of cellular proliferation | 5.10e-07 | 239 |