FFCP PHASE1:Hg19::chr3:191046810..191046860,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:191046810..191046860,+ to FFCP PHASE1:Hg19::chr3:191046810..191046860,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=152137 | |EntrezGene=152137 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18111 | |HGNC=18111 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IVM0 | |UniProt=Q8IVM0 | ||
|association_with_transcript=-5bp_to_ENST00000392455_5end | |||
|cluster_id=chr3:191046810..191046860,+ | |||
|coexpression_cluster_id=C44 | |||
|description=CAGE_peak_6_at_CCDC50_5end | |||
|id=chr3:191046810..191046860,+ | |||
|ontology_enrichment_celltype=CL:0000542!2.19e-09!53;CL:0000051!2.19e-09!53;CL:0000222!2.84e-09!119;CL:0000838!5.54e-09!52;CL:0000236!4.58e-08!14;CL:0000945!6.06e-08!24;CL:0000826!6.06e-08!24;CL:0000192!4.24e-07!42;CL:0000514!4.24e-07!42;CL:0000359!8.42e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000236;3.64e-15;13!CL:0000945;2.49e-14;24!CL:0000542;1.66e-11;53!CL:1000413;4.80e-10;9!CL:0000115;1.28e-09;36!CL:0000359;8.62e-09;32!CL:0002139;2.98e-07;24!CL:0002544;3.49e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.20e-17,53;CL:0000051,1.20e-17,53;CL:0000838,8.00e-17,52;CL:0000236,5.42e-16,14;CL:0000945,1.83e-14,24;CL:0000826,1.83e-14,24;CL:0000222,1.72e-10,121;CL:1000413,4.91e-10,9;CL:0000115,1.12e-09,36;CL:0000359,6.86e-09,32;CL:0002078,1.57e-08,45;CL:0000192,8.65e-08,43;CL:0000514,8.65e-08,43;CL:0002139,3.01e-07,24;CL:0002544,4.54e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;1.66e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!3.06e-16!110;UBERON:0001009!9.81e-16!113;UBERON:0000055!1.28e-13!69;UBERON:0004872!1.77e-13!84;UBERON:0001637!6.05e-13!42;UBERON:0003509!6.05e-13!42;UBERON:0004572!6.05e-13!42;UBERON:0001981!1.12e-12!60;UBERON:0007500!1.12e-12!60;UBERON:0004537!1.12e-12!60;UBERON:0006965!1.12e-12!60;UBERON:0002049!7.33e-12!79;UBERON:0007798!7.33e-12!79;UBERON:0003914!5.35e-11!118;UBERON:0004573!4.63e-10!33;UBERON:0004571!4.63e-10!33;UBERON:0000947!3.52e-07!21;UBERON:0010191!3.52e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.06e-12;42!UBERON:0003509;2.06e-12;42!UBERON:0004572;2.06e-12;42!UBERON:0003915;4.80e-10;9!UBERON:0004700;4.80e-10;9!UBERON:0001917;4.80e-10;9!UBERON:0004573;1.36e-09;33!UBERON:0004571;1.36e-09;33!UBERON:0000947;4.30e-08;21!UBERON:0010191;4.30e-08;21!UBERON:0007500;5.19e-08;56!UBERON:0001981;5.19e-08;56!UBERON:0004537;5.19e-08;56!UBERON:0000055;3.56e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,9.71e-17,42;UBERON:0003509,9.71e-17,42;UBERON:0004572,9.71e-17,42;UBERON:0000055,1.48e-14,68;UBERON:0004535,1.80e-13,109;UBERON:0007500,1.84e-13,59;UBERON:0001981,1.84e-13,59;UBERON:0004537,1.84e-13,59;UBERON:0006965,1.84e-13,59;UBERON:0002049,5.67e-13,78;UBERON:0007798,5.67e-13,78;UBERON:0001009,9.51e-13,112;UBERON:0003914,2.83e-11,117;UBERON:0004573,1.05e-10,33;UBERON:0004571,1.05e-10,33;UBERON:0004872,1.19e-10,83;UBERON:0003915,4.91e-10,9;UBERON:0004700,4.91e-10,9;UBERON:0001917,4.91e-10,9;UBERON:0000947,6.91e-08,21;UBERON:0010191,6.91e-08,21 | |||
|phase1_expression=0.54503513781167,0,0.281908808191942,0,1.34088328328186,0,0,0.631719873426831,0.261185628199839,0,2.79120467188971,0.218441372130172,0,0.37129905888014,0,3.36162573225888,1.20538905604795,0.730310090387373,0.975865597581014,0.246242116153576,0.408001382488506,0.626909442956176,0,0.273748850145768,0.125542639594803,4.20273731613732,3.44822475689772,3.93553906568396,0.393364276848904,2.30297638858328,0.928896739896456,0,0,0,0.309868802321207,0.142169232487422,0.587200878669695,0.553995408531877,0.601633342410425,0.217010870715852,0.223915474239924,0,0.257575567634187,0,0.377875943688809,0,0,0,0,0,0,0,0,0.645484683583826,0,0.188242339542605,0,0,0.306083892370903,0,0,0.329851300186716,0,0,0,0,0.622822248995575,0,0,0,0,0.368277635987565,0,0,0.212604299965044,0,0,0,0.16072558669708,0,0,0,10.5597746676794,6.00752472388345,3.55803701545422,3.41384178053206,4.00395987036012,2.29900975981793,5.94940385506376,4.77026877267682,2.84606484554724,2.93618594685469,3.82273228125229,0,1.12101712596307,0.790152254325231,0.196709770113833,1.96505381374582,1.85041349099558,0,0,0.946895611469467,0,2.56244050835899,0,1.10766947291811,2.97884250141517,0.640456598628376,3.12142434143708,1.15106533222573,3.31620021343018,0.579606171470105,0,0.267540828089713,2.09071047609954,1.0197840842781,0.766440987203842,2.40539211837841,6.83153168452658,0.318565414324097,0,1.90090408889675,1.35517607169996,1.15187950038977,0,0.473554504088034,0.821127996921047,2.21767417547206,2.13952156626806,0.144824403882799,2.43806866313962,0.670700859703636,0.639312809217652,0,0.50133791063589,0,0.795285947051099,0.973269740605272,0.189069634328136,0.221729397462564,0.351339142772504,0.72038491523742,0,0,0,0,0,42.9283123749616,52.6235317917718,48.2894751728434,2.78267370313387,3.4409383804245,1.04142150482278,1.13061588384802,1.25849830862972,3.57653454522088,1.67195973229448,1.29208379584664,2.13459757612026,3.01248551488203,0.805658634218294,0.760272105718513,0,1.47065232138347,1.62028389576352,0.892997282840798,0.22452937262617,0.675668882899933,0,2.84779697870439,1.46561395144326,1.31780417436063,0,0,0.496971951695318,1.2663051166458,0.662045904066094,0.860509862246441,0.709336764396714,0.560677600142307,3.20246987189115,0.74000264525148,0.933633106199299,1.0776853765575,1.79808093424805,0.302714855289863,0,0,0,1.1409436430889,0.298897361103602,0,0.161872944368132,0.140450806702248,0,0.859840221182376,0.103325781175765,0,0.741800787835671,2.73048408581408,0,0.168336113954066,0.125118519871964,0.554128230968366,1.75591048352335,0.30648779579902,0.45071417671979,2.7223723958405,1.07633781413317,0.640672166455702,0.847727604638247,0.600182192168805,0.309157587715317,0,0.558350568994769,0.168776332241266,0.194874010322397,0.757301322732344,0.644349290496095,0.161646056818812,1.06502877754984,0.705264687593482,1.3564847384839,0.57978255948989,0.818238361772504,0.573609190778008,0.121973706129595,0,0.116193942869518,0,0,0.36497735907583,0,0.643240938192885,1.38134921352481,0.464367928031979,0,0.118306800039844,0.337169380156203,0.482022059766964,0.220587945464788,0,0,0.134831308160164,0,0.38474715694639,0,1.40241773803446,1.2347220339942,0,0,0,0,0,0,0.686271241194102,0.219500570817251,0,0,0.277765335475589,0.325808305310325,0,0,0.115930404975077,0.469634776943287,0.721832238805369,0.462985512576611,0,0,0,0,0,0,0.93733833986777,0.503946384596579,0.283550194484773,0.447792613514241,0.290633938513962,0,0,0,0.414656231081544,0.432359860250884,0,0,0.763976851116555,0,3.4214489204541,0.102827492703324,0.600686115687835,1.14330573052231,0.336393253036082,0.87192013766656,0.4400297149257,0.775630294546667,0,0,2.12750493267896,1.04007436911366,0.514414748524284,0,0.799266537048298,1.71573592389777,1.62786481617433,0,0.325736184293735,1.42156779497018,0.791951872933429,0.602878754119172,0,2.29937879718731,0,0.502257091432126,0,1.91699884393266,1.14861935834114,0,0.579125226670317,0.205476322550383,0.537182889719687,0,3.34952292343276,2.37190332345469,0.77005821767849,0.76228387266739,2.60279707715243,0.773288812777695,1.34013012267479,1.27587750330633,0,0,0,0.49076596687656,0.500170521059677,0.271265023699736,0.415941723061614,0,0,0.234282829985426,0.300946099727719,0,0,0,0.368738337083406,0.521301686808497,0,0,2.48121631347465,0.647142602455851,1.38745825144478,0,0,0,0.992431231275107,0.767309866440312,0.280660094433074,0.512556597022804,2.04682899626681,0.804269605718038,0,0.154209693802656,0.177561725313127,0.410635780069046,0,0.116210378459959,0.362578348774867,0.40101294060657,0.184161977871793,0.918515585316854,2.1850940160806,0.786746489756545,0,0.693138033939733,1.56869953835371,0,0.633309773357254,2.27466768141793,1.02056223165909,1.0795795805107,1.54227252690289,0.812839312631559,0.501689773854853,0.764628819135115,0.831076008928724,0,0,0,0.256450125116389,0.656029291399411,1.62689197332152,0.618246069886334,0,0.330037999682352,0.574265537996172,0,0,0.193341436584244,0.154048617114644,0,0.413509717453592,0,0.290033387828457,0.1704532548322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| ||
|short_description=p6@CCDC50 | |||
}} | }} |
Latest revision as of 10:25, 17 September 2015
Short description: | p6@CCDC50 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CCDC50_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | -5bp_to_ENST00000392455_5end |
EntrezGene: | CCDC50 |
HGNC: | 18111 |
UniProt: | Q8IVM0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.20e-17 | 53 |
common lymphoid progenitor | 1.20e-17 | 53 |
lymphoid lineage restricted progenitor cell | 8.00e-17 | 52 |
B cell | 5.42e-16 | 14 |
lymphocyte of B lineage | 1.83e-14 | 24 |
pro-B cell | 1.83e-14 | 24 |
mesodermal cell | 1.72e-10 | 121 |
endothelial cell of artery | 4.91e-10 | 9 |
endothelial cell | 1.12e-09 | 36 |
vascular associated smooth muscle cell | 6.86e-09 | 32 |
meso-epithelial cell | 1.57e-08 | 45 |
smooth muscle cell | 8.65e-08 | 43 |
smooth muscle myoblast | 8.65e-08 | 43 |
endothelial cell of vascular tree | 3.01e-07 | 24 |
aortic endothelial cell | 4.54e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
artery | 9.71e-17 | 42 |
arterial blood vessel | 9.71e-17 | 42 |
arterial system | 9.71e-17 | 42 |
vessel | 1.48e-14 | 68 |
cardiovascular system | 1.80e-13 | 109 |
epithelial tube open at both ends | 1.84e-13 | 59 |
blood vessel | 1.84e-13 | 59 |
blood vasculature | 1.84e-13 | 59 |
vascular cord | 1.84e-13 | 59 |
vasculature | 5.67e-13 | 78 |
vascular system | 5.67e-13 | 78 |
circulatory system | 9.51e-13 | 112 |
epithelial tube | 2.83e-11 | 117 |
systemic artery | 1.05e-10 | 33 |
systemic arterial system | 1.05e-10 | 33 |
splanchnic layer of lateral plate mesoderm | 1.19e-10 | 83 |
endothelial tube | 4.91e-10 | 9 |
arterial system endothelium | 4.91e-10 | 9 |
endothelium of artery | 4.91e-10 | 9 |
aorta | 6.91e-08 | 21 |
aortic system | 6.91e-08 | 21 |