FFCP PHASE1:Hg19::chr8:145638927..145638936,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:145638927..145638936,- to FFCP PHASE1:Hg19::chr8:145638927..145638936,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55630 | |EntrezGene=55630 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17129 | |HGNC=17129 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000530807_5end | |||
|cluster_id=chr8:145638927..145638936,- | |||
|description=CAGE_peak_3_at_SLC39A4_5end | |||
|id=chr8:145638927..145638936,- | |||
|ontology_enrichment_celltype=CL:0000066!4.51e-20!254 | |||
|ontology_enrichment_celltype_v019=CL:1000507;8.43e-11;10!CL:1000494;8.43e-11;10!CL:1000449;2.42e-08;15!CL:1000497;4.46e-07;17!CL:0002518;4.46e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.43e-19,253;CL:1000507,8.59e-11,10;CL:1000494,8.59e-11,10;CL:1000449,2.48e-08,15;CL:0002076,2.75e-07,42;CL:1000497,4.54e-07,17;CL:0002518,4.54e-07,17;CL:0000223,9.19e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.38e-17!235;DOID:14566!7.57e-17!239;DOID:305!2.06e-16!106;DOID:0050687!2.39e-15!143;DOID:8692!2.26e-11!31;DOID:0050686!9.58e-11!137;DOID:1240!1.54e-09!39;DOID:299!3.14e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.62e-18;31!DOID:1240;1.59e-11;39!DOID:299;3.62e-10;25!DOID:1036;7.43e-10;8!DOID:2531;5.55e-07;51!DOID:0060083;5.55e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.66e-18,31;DOID:162,5.74e-17,235;DOID:14566,3.63e-16,239;DOID:305,1.94e-15,106;DOID:1240,1.68e-14,39;DOID:0050687,2.34e-13,143;DOID:0050686,3.97e-13,137;DOID:2531,2.25e-10,51;DOID:0060083,2.25e-10,51;DOID:299,5.70e-10,25;DOID:1036,6.63e-10,8 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.86e-08!169;UBERON:0000925!1.86e-08!169;UBERON:0006595!1.86e-08!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;8.43e-11;10!UBERON:0009773;8.43e-11;10!UBERON:0001231;8.43e-11;10!UBERON:0004810;8.43e-11;10!UBERON:0006555;2.42e-08;15!UBERON:0004819;2.42e-08;15!UBERON:0001285;2.42e-08;15!UBERON:0007684;2.42e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,8.59e-11,10;UBERON:0004211,2.48e-08,15;UBERON:0009773,2.48e-08,15;UBERON:0001231,2.48e-08,15;UBERON:0001285,2.48e-08,15;UBERON:0007684,2.48e-08,15;UBERON:0004208,2.48e-08,15;UBERON:0006555,1.17e-07,16;UBERON:0004819,1.17e-07,16;UBERON:0005631,3.16e-07,14;UBERON:0000158,3.16e-07,14;UBERON:0005153,9.05e-07,37 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0,0,0,0,0,0,0,1.47440361900905,8.37361401566913,1.09220686065086,1.84636884759917,0.123766352960047,0,0.672325146451775,0,0,0,0.61560529038394,0.408001382488506,0.626909442956176,0,0.684372125364421,0.627713197974014,0,0.328402357799783,0.157421562627358,0.393364276848904,0,0.154816123316076,1.83884244895785,1.204823675113,0,0,0.142169232487422,0.587200878669695,0,0,0,0.223915474239924,0.32389366601898,0.257575567634187,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.212604299965044,0.209658645508376,0.112328631146495,0,0,0,0.19891667719909,0,0,0.546138611262131,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0,0,0.167186495390678,0.32592226663359,0,0,0.222820913770347,0,0,0,0.25618263945135,0.260118695119756,0.164437904603676,0.276350017785848,0,0.14828656316206,0,0,0.453237370790265,0.383220493601921,0.68725489096526,0,0.318565414324097,0,0.950452044448374,0.150575119077773,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0.511450247374121,0.361439152384566,0,0.289693037921647,0,0,0.945348171640679,0.443458794925128,0.527008714158756,0.589405839739707,3.27865759463288,1.48313777113772,0,0.174129737299267,0.132957960518865,0,0,0.74291500265913,0,0,1.38856200643038,0,0.419499436209906,0,0.208994966536811,0,0.71153252537342,0,0,0,0,0,0.81014194788176,0.17859945656816,0,0.112611480483322,0,0,0.183201743930407,0,0,0.436094052142534,0,0.12663051166458,0.662045904066094,0,0.354668382198357,0.560677600142307,0,1.2333377420858,0,0.134710672069688,0,0.151357427644931,1.15235184896,0.937285727335186,0,0,0.149448680551801,0.23486899728753,0,0,0.61246251376468,0.368502951935304,0,0,0,0,0,0.336672227908132,0,0.554128230968366,0.438977620880838,0,0,0.113432183160021,0.538168907066586,0.427114777637135,0,0.600182192168805,0.309157587715317,0.257640540045629,0.18611685633159,0,0.292311015483596,0,0.184099797284599,0,0,0.10075209822764,0.169560592310488,1.93260853163297,1.09098448236334,0,0.365921118388786,0,0.69716365721711,0.310983165046111,1.00928340350251,0,0,0.643240938192885,0,0.464367928031979,0,0.473227200159376,0.505754070234305,0.241011029883482,0.441175890929576,0.217879444092406,0.474541238222193,0.539325232640658,0.196221465125346,0.769494313892781,0,0,0.8231480226628,2.94017422771084,0,0,0,0,0,0.857839051492628,1.64625428112938,3.37205259772859,0.201057944823262,0.555530670951178,0.325808305310325,0,0,0.231860809950154,0.469634776943287,0.433099343283221,0,0,1.58040879591855,4.29243081047436,0,0.702012795417713,0,3.74935335947108,0.335964256397719,0.850650583454319,2.32852159027406,2.03443756959773,0.383382679165211,3.4486426652716,0.968532774145487,0.207328115540772,0.144119953416961,0.25248486685276,0.317489471460845,0.381988425558278,1.17217447210047,1.71072446022705,0.205654985406647,0.300343057843917,0.571652865261156,0.336393253036082,0.43596006883328,0.22001485746285,0.258543431515556,3.57656445851882,0,0.797814349754612,0,1.28603687131071,1.41849132023278,0.266422179016099,0.142977993658148,1.08524321078289,0,0,0.355391948742546,0,0.904318131178758,0.871533458600294,0.899756920638513,1.2162378064119,0,0,0.479249710983165,0,0,0,0,0,0.336255431980582,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0.35142424497814,0.300946099727719,0,0,0,0,0.0868836144680828,0.979005787313703,0.686286847621712,0.413536052245775,0,0,8.79069957194152,8.32177197552485,1.5119514666484,0.248107807818777,0.306923946576125,0,0.384417447767103,1.02341449813341,0,0,0,0.177561725313127,0.328508624055237,0.519254429183621,0.116210378459959,0.120859449591622,1.40354529212299,1.74953878978203,0,0,0.393373244878272,0.902399225814824,1.5403067420883,9.41219723012226,1.46139224653261,1.26661954671451,0,0,0.431831832204279,0,2.16757150035082,2.00675909541941,2.29388645740534,4.15538004464362,1.79099803777743,0.219259876645935,0.261435451024901,0,0,0.325378394664303,0.103041011647722,0.183138929636687,0.247528499761764,2.29706215198469,1.30012049207304,0,0.193341436584244,0,0,0.275673144969061,0.107420244868274,0.145016693914229,0.170453254832202,0.267096106940212,0.991709492165869,2.49847087574638,0.255225424989168,1.6185244936888,0,0,0,0,0.532306030317022,0,0.37064843820784,0.572499546967965,0,0.949138274156178,0.38126038784765,0.511795582622668,0,0,0,0.179872457583315,0,0.117812402345686,0.606547444719948,1.58510321173008,0,1.46290121726877,0,0,0.272999822815972,0.141405431953713,0,0,0.66343897524122,0.438450885253763,0,0,0.405820753925408,0,0.845086807596724,0.143411352204052,0,0,0,0,0,0.379473173765715,0,0.769776901804097,0.670302275535787,0,0,0.86101074534246,3.36942951335251,0,0.689170200620878,0,0,0,0.238231775457789,0,0,0.540031437238115,0,0.320472213382419,0,1.96032172784825,0,0,0.284567373393656,0.637705090915289,0.997896857164083,0.5745161103971,1.2700414963433,1.62310970137278,1.12318871245384,2.05411211129873,0,0,1.52362600021443,2.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| ||
|short_description=p3@SLC39A4 | |||
}} | }} |
Latest revision as of 01:51, 17 September 2015
Short description: | p3@SLC39A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC39A4_5end |
Coexpression cluster: | NA |
Association with transcript: | 16bp_to_ENST00000530807_5end |
EntrezGene: | SLC39A4 |
HGNC: | 17129 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.43e-19 | 253 |
kidney tubule cell | 8.59e-11 | 10 |
nephron tubule epithelial cell | 8.59e-11 | 10 |
epithelial cell of nephron | 2.48e-08 | 15 |
endo-epithelial cell | 2.75e-07 | 42 |
kidney cell | 4.54e-07 | 17 |
kidney epithelial cell | 4.54e-07 | 17 |
endodermal cell | 9.19e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 8.59e-11 | 10 |
nephron epithelium | 2.48e-08 | 15 |
renal tubule | 2.48e-08 | 15 |
nephron tubule | 2.48e-08 | 15 |
nephron | 2.48e-08 | 15 |
uriniferous tubule | 2.48e-08 | 15 |
nephrogenic mesenchyme | 2.48e-08 | 15 |
excretory tube | 1.17e-07 | 16 |
kidney epithelium | 1.17e-07 | 16 |
extraembryonic membrane | 3.16e-07 | 14 |
membranous layer | 3.16e-07 | 14 |
epithelial bud | 9.05e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.66e-18 | 31 |
cancer | 5.74e-17 | 235 |
disease of cellular proliferation | 3.63e-16 | 239 |
carcinoma | 1.94e-15 | 106 |
leukemia | 1.68e-14 | 39 |
cell type cancer | 2.34e-13 | 143 |
organ system cancer | 3.97e-13 | 137 |
hematologic cancer | 2.25e-10 | 51 |
immune system cancer | 2.25e-10 | 51 |
adenocarcinoma | 5.70e-10 | 25 |
chronic leukemia | 6.63e-10 | 8 |