FFCP PHASE1:Hg19::chr8:72756380..72756427,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:72756380..72756427,- to FFCP PHASE1:Hg19::chr8:72756380..72756427,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9242 | |EntrezGene=9242 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7321 | |HGNC=7321 | ||
|TSSclassifier=strong | |||
|UniProt=O60682 | |UniProt=O60682 | ||
|association_with_transcript=275bp_to_ENST00000325509_5end | |||
|cluster_id=chr8:72756380..72756427,- | |||
|coexpression_cluster_id=C2927 | |||
|description=CAGE_peak_8_at_MSC_5end | |||
|id=chr8:72756380..72756427,- | |||
|ontology_enrichment_celltype=CL:0000055!6.78e-21!180;CL:0000048!2.51e-13!430;CL:0000723!3.69e-13!436;CL:0000034!8.01e-12!444;CL:0000680!2.61e-11!57;CL:0000056!2.61e-11!57;CL:0000355!2.61e-11!57;CL:0000187!1.34e-10!54;CL:0000057!2.66e-09!75;CL:0000393!1.51e-08!60;CL:0000211!1.51e-08!60;CL:0000183!1.72e-08!59;CL:0000219!2.30e-08!390;CL:0002194!2.78e-08!63;CL:0000576!2.78e-08!63;CL:0000040!2.78e-08!63;CL:0000559!2.78e-08!63;CL:0000359!6.87e-08!32;CL:0000192!7.24e-08!42;CL:0000514!7.24e-08!42;CL:0002009!1.31e-07!65;CL:0002057!2.99e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.66e-12;33!CL:0002057;1.66e-12;33!CL:0000473;1.69e-12;39!CL:0000234;1.69e-12;39!CL:0000136;4.53e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,6.66e-13,48;CL:0000234,6.66e-13,48;CL:0000219,2.14e-12,386;CL:0000723,4.80e-12,433;CL:0000048,4.84e-12,427;CL:0000034,2.37e-11,441;CL:0000860,2.20e-10,42;CL:0002057,2.20e-10,42;CL:0002194,7.64e-10,59;CL:0000576,7.64e-10,59;CL:0000040,7.64e-10,59;CL:0000559,7.64e-10,59;CL:0000134,2.28e-09,354;CL:0002009,2.66e-09,61;CL:0002320,8.61e-09,361;CL:0000839,4.22e-08,66;CL:0000557,6.95e-08,67;CL:0000766,6.66e-07,72 | |||
|ontology_enrichment_development_v019=CL:0002057;1.80e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.49e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.18e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!1.05e-14!167;UBERON:0002385!3.74e-11!63;UBERON:0001015!3.74e-11!63;UBERON:0000383!3.74e-11!63;UBERON:0001134!4.61e-11!61;UBERON:0002036!4.61e-11!61;UBERON:0003082!4.61e-11!61;UBERON:0004290!2.83e-10!70;UBERON:0000914!1.56e-09!83;UBERON:0002329!1.56e-09!83;UBERON:0003077!1.56e-09!83;UBERON:0003059!1.56e-09!83;UBERON:0007282!1.56e-09!83;UBERON:0009618!1.56e-09!83;UBERON:0007285!1.56e-09!83;UBERON:0004872!1.42e-08!84;UBERON:0000486!7.40e-08!82;UBERON:0001637!7.92e-07!42;UBERON:0003509!7.92e-07!42;UBERON:0004572!7.92e-07!42;UBERON:0000948!8.99e-07!24;UBERON:0005498!8.99e-07!24;UBERON:0004140!8.99e-07!24;UBERON:0009881!8.99e-07!24;UBERON:0004141!8.99e-07!24;UBERON:0003084!8.99e-07!24;UBERON:0007005!8.99e-07!24;UBERON:0004139!8.99e-07!24;UBERON:0004291!8.99e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.61e-08;9!UBERON:0000042;1.61e-08;9!UBERON:0003688;6.15e-07;6!UBERON:0002358;6.15e-07;6!UBERON:0003684;6.15e-07;6!UBERON:0001178;6.15e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.46e-09,315;UBERON:0004120,1.46e-09,315;UBERON:0006603,1.46e-09,315;UBERON:0002384,2.49e-09,371;UBERON:0002204,4.05e-08,167;UBERON:0003081,7.25e-08,203;UBERON:0004797,5.23e-07,7;UBERON:0004872,8.40e-07,83;UBERON:0003688,8.69e-07,6;UBERON:0002358,8.69e-07,6;UBERON:0003684,8.69e-07,6;UBERON:0001178,8.69e-07,6 | |||
|phase1_expression=1.63510541343501,1.49870366723688,2.53717927372748,1.0007329835313,4.02264984984559,1.74467704820074,0,0,1.82829939739887,0.491467873003018,0,0,0,0,0,2.01697543935533,0.602694528023977,0,0.487932798790507,0.123121058076788,0,0.626909442956176,0,0,0.125542639594803,0.152826811495903,0.0821005894499457,0.472264687882075,0.393364276848904,0.383829398097213,0,0,0,0,0,0,0,0,1.00272223735071,0.434021741431704,0.223915474239924,0,0,0,0.377875943688809,0.242584061187816,1.39457422143411,6.16751832032739,3.09706370895104,2.3015391385772,2.30544635876191,2.36482229888585,1.37898272294647,0.645484683583826,1.35426486594342,1.12945403725563,1.36453075028923,1.12361742222542,1.22433556948361,0.641858054152187,0.639337125799041,0.329851300186716,0,0,9.57690487474327,3.97169657283798,4.9825779919646,2.51248665256743,2.60741459210101,0.65156653411535,7.87019353423379,6.2607198117886,4.1140110367315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,1.2786256184353,0.361439152384566,1.50401373190767,0.434539556882471,0.795285947051099,2.43317435151318,0,0,0.263504357079378,0.196468613246569,0,0,1.62273696827342,0.696518949197069,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20848795132744,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,2.27934920996244,1.19168262731897,2.29469296599051,2.4826786753885,0.560677600142307,3.20246987189115,3.94668077467456,0,1.48181739276657,0.653847612453835,0.302714855289863,0,3.28050004567315,0.312160076830321,0,0,0,0.323745888736263,0,0,0,1.03325781175765,5.94001428641027,5.43987244412825,0.910161361938026,4.31170885089743,0.168336113954066,0,0.277064115484183,0.438977620880838,0.919463387397059,3.90618953157152,0.680593098960126,0,0.427114777637135,1.69545520927649,0,0.206105058476878,0.257640540045629,0.18611685633159,0,0.584622030967192,0,1.56484827691909,1.77810662500693,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,3.21620469096443,2.76269842704961,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.977424915930974,0,0,0.115930404975077,0,0.288732895522148,0.925971025153221,0,0,0,0.492434012174795,4.68008530278475,1.18904929830983,0,0.16798212819886,0,0.268675568108545,0,0,0,0,0,0.144119953416961,0,5.27032522625003,3.81988425558278,5.86087236050235,10.2643467613623,0.719792448923265,0,4.57322292208925,0,0,0,1.42198887333556,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0,0,0,0,0,2.41151501647669,2.61460037580088,1.29964888536674,2.43247561282381,0.502257091432126,2.10833939483032,4.55287225434007,0,0,0.289562613335158,0.61642896765115,0.716243852959582,0.224170287987055,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,3.11956292296211,0.713715955188647,1.10391690523754,0.35142424497814,0.300946099727719,2.27407504055985,0,0,0.184369168541703,0.260650843404249,0,0,0,0.215714200818617,0.213455115606889,0,0,0,2.72918588600655,0.61384789315225,0.561320188866147,7.94462725385346,0.511707249066704,4.66476371316462,4.45254199334973,0.462629081407967,1.42049380250502,0,0.519254429183621,0.116210378459959,0,0.200506470303285,0,0.918515585316854,0.910455840033585,1.31124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,4.82051789532479,3.57681657680851,0.308097234229289,0.307007349452259,0.551346289938122,0.537101224341368,0.435050081742686,0.170453254832202,2.04773681987496,0.165284915360978,0,0,0,1.39453664789186,0.62962469366128,0,0.616067160352178,2.12922412126809,1.73986598415015,0.37064843820784,1.5743737541619,0,0.632758849437452,0.190630193923825,0,0.855877976067841,0.636406495851874,1.56989728039846,0.719489830333259,0.54907405947211,0.706874414074119,0.202182481573316,0,0.421258456238981,0.48763373908959,1.70599442741899,2.11300293513511,0.9554993798559,1.97967604735198,1.13008116620243,2.75682671773062,2.65375590096488,0.876901770507525,0,0,0.608731130888112,0.92947049429925,1.40847801266121,0.143411352204052,0,1.07001315444375,0,4.01104507065562,3.95153871551882,0.379473173765715,0.349934720244983,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0.334330152832435,0,0,0,0,0,0,0.779160935160341,0,0,0.996239941255349,0.552567831062295,0,1.02268682502155,0.492339221844278,0.933118762985422,0,0,0,0.493217028184668,0,0,0,0,0,0,0,1.44999915086959,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,12.9893943665581,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0.296521128680622,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.189559738885464,0.150323419414493,0,0.664653872707185,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0.274083849293502,0.397429223405979,0.126621591911757,0,1.44285876452761,0.640358984218058,0,0,0,0,0,0,0.235694034616795,0.135904206073614,0.627617077873999,3.46793939963494,5.20111061822734,0,0.136905378891993,0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| 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| ||
|short_description=p8@MSC | |||
}} | }} |
Latest revision as of 01:09, 19 September 2015
Short description: | p8@MSC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_MSC_5end |
Coexpression cluster: | C2927_cholangiocellular_mesenchymal_Fibroblast_CD14_glioma_Preadipocyte_Melanocyte |
Association with transcript: | 275bp_to_ENST00000325509_5end |
EntrezGene: | MSC |
HGNC: | 7321 |
UniProt: | O60682 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 6.66e-13 | 48 |
phagocyte | 6.66e-13 | 48 |
motile cell | 2.14e-12 | 386 |
somatic stem cell | 4.80e-12 | 433 |
multi fate stem cell | 4.84e-12 | 427 |
stem cell | 2.37e-11 | 441 |
classical monocyte | 2.20e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.20e-10 | 42 |
monopoietic cell | 7.64e-10 | 59 |
monocyte | 7.64e-10 | 59 |
monoblast | 7.64e-10 | 59 |
promonocyte | 7.64e-10 | 59 |
mesenchymal cell | 2.28e-09 | 354 |
macrophage dendritic cell progenitor | 2.66e-09 | 61 |
connective tissue cell | 8.61e-09 | 361 |
myeloid lineage restricted progenitor cell | 4.22e-08 | 66 |
granulocyte monocyte progenitor cell | 6.95e-08 | 67 |
myeloid leukocyte | 6.66e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.46e-09 | 315 |
mesoderm-derived structure | 1.46e-09 | 315 |
presumptive mesoderm | 1.46e-09 | 315 |
connective tissue | 2.49e-09 | 371 |
musculoskeletal system | 4.05e-08 | 167 |
lateral plate mesoderm | 7.25e-08 | 203 |
blood vessel layer | 5.23e-07 | 7 |
splanchnic layer of lateral plate mesoderm | 8.40e-07 | 83 |
omentum | 8.69e-07 | 6 |
peritoneum | 8.69e-07 | 6 |
abdominal cavity | 8.69e-07 | 6 |
visceral peritoneum | 8.69e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.18e-09 | 14 |