FFCP PHASE1:Mm9::chr1:176260649..176260652,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr1:176260649..176260652,+ to FFCP PHASE1:Mm9::chr1:176260649..176260652,+: NSchange) |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=100503310,66289 | |EntrezGene=100503310,66289 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=478 | |||
|TSSclassifier=NA | |||
|UniProt=Q8R1M8 | |UniProt=Q8R1M8 | ||
|association_with_transcript=0bp_to_ENSMUST00000027816,NM_025470,uc007dsy.2_5end | |||
|cluster_id=chr1:176260649..176260652,+ | |||
|description=CAGE_peak_1_at_1810030J14Rik_5end,CAGE_peak_1_at_LOC100503310_5end | |||
|id=chr1:176260649..176260652,+ | |||
|ontology_enrichment_celltype=CL:0002563!4.85e-36!9;CL:0002251!4.85e-36!9;CL:0000239!1.13e-24!6;CL:0000677!1.13e-24!6;CL:0000212!1.13e-24!6;CL:0000584!1.13e-24!6;CL:0000066!9.06e-22!25;CL:0002076!4.08e-21!15;CL:0000075!4.35e-21!7;CL:0000223!1.66e-15!20;CL:0002250!6.77e-13!3;CL:0000473!8.16e-13!3;CL:0000627!8.16e-13!3;CL:0000682!8.16e-13!3;CL:0000063!5.77e-07!66 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.34e-33,9;CL:0002251,1.34e-33,9;CL:0000239,3.59e-26,6;CL:0000677,3.59e-26,6;CL:0000584,3.59e-26,6;CL:0000075,1.90e-22,7;CL:0002076,5.29e-20,15;CL:0000066,2.09e-19,25;CL:0000223,6.93e-15,20;CL:0002250,2.63e-09,3;CL:0000682,2.90e-09,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.57e-52!15;UBERON:0001242!3.55e-44!13;UBERON:0000060!3.55e-44!13;UBERON:0001262!3.55e-44!13;UBERON:0004786!3.55e-44!13;UBERON:0003350!4.85e-36!9;UBERON:0004808!4.85e-36!9;UBERON:0001277!4.85e-36!9;UBERON:0004923!5.89e-32!24;UBERON:0000485!2.92e-29!11;UBERON:0000160!1.53e-21!43;UBERON:0005409!5.28e-17!59;UBERON:0000331!2.41e-13!3;UBERON:0002116!2.41e-13!3;UBERON:0001204!2.41e-13!3;UBERON:0001168!2.41e-13!3;UBERON:0001962!8.48e-10!2;UBERON:0001961!8.48e-10!2;UBERON:0001744!8.48e-10!2;UBERON:0001007!2.05e-08!128;UBERON:0001555!2.05e-08!128;UBERON:0007026!2.05e-08!128;UBERON:0004119!3.11e-08!130;UBERON:0000925!3.11e-08!130;UBERON:0006595!3.11e-08!130;UBERON:0000064!7.30e-07!99;UBERON:0002465!8.61e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.73e-59,15;UBERON:0001242,3.87e-47,13;UBERON:0001262,3.87e-47,13;UBERON:0004786,3.87e-47,13;UBERON:0004923,1.13e-36,24;UBERON:0003350,1.34e-33,9;UBERON:0004808,1.34e-33,9;UBERON:0001277,1.34e-33,9;UBERON:0000485,2.00e-27,11;UBERON:0000331,1.49e-19,3;UBERON:0002116,1.49e-19,3;UBERON:0001204,1.49e-19,3;UBERON:0001168,1.49e-19,3;UBERON:0000160,3.11e-19,31;UBERON:0002108,7.90e-15,4;UBERON:0001962,3.90e-14,2;UBERON:0001961,3.90e-14,2;UBERON:0001744,3.90e-14,2;UBERON:0005409,2.51e-12,47;UBERON:0002465,9.97e-10,3;UBERON:0003199,6.29e-08,1 | |||
|phase1_expression=0,1.04692622291808,0.909998478779072,6.35174843744343,10.0179145989269,3.18970616632591,59.3376107112635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,40.9580602351121,49.0935861483744,0.57423196411502,4.30761996159075,3.44753972297422,87.2207495304756,3.52842181663903,1.55211357458713,0,0,0,0.866554859253824,15.2935873729813,2.85837098767317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,1.04692622291808,0.909998478779072,6.35174843744343,10.0179145989269,3.18970616632591,59.3376107112635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,40.9580602351121,49.0935861483744,0.57423196411502,4.30761996159075,3.44753972297422,87.2207495304756,3.52842181663903,1.55211357458713,0,0,0,0.866554859253824,15.2935873729813,2.85837098767317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@1810030J14Rik,p1@LOC100503310 | |||
}} | }} |
Latest revision as of 21:00, 26 September 2015
Short description: | p1@1810030J14Rik, p1@LOC100503310 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_1810030J14Rik_5end, CAGE_peak_1_at_LOC100503310_5end |
Coexpression cluster: | MCL_coexpression_mm9:478 |
Association with transcript: | 0bp_to_ENSMUST00000027816, NM_025470, uc007dsy.2_5end |
EntrezGene: | 100503310,66289 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.34e-33 | 9 |
epithelial cell of alimentary canal | 1.34e-33 | 9 |
brush border epithelial cell | 3.59e-26 | 6 |
gut absorptive cell | 3.59e-26 | 6 |
enterocyte | 3.59e-26 | 6 |
columnar/cuboidal epithelial cell | 1.90e-22 | 7 |
endo-epithelial cell | 5.29e-20 | 15 |
epithelial cell | 2.09e-19 | 25 |
endodermal cell | 6.93e-15 | 20 |
intestinal crypt stem cell | 2.63e-09 | 3 |
M cell of gut | 2.90e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.73e-59 | 15 |
intestinal mucosa | 3.87e-47 | 13 |
wall of intestine | 3.87e-47 | 13 |
gastrointestinal system mucosa | 3.87e-47 | 13 |
organ component layer | 1.13e-36 | 24 |
epithelium of mucosa | 1.34e-33 | 9 |
gastrointestinal system epithelium | 1.34e-33 | 9 |
intestinal epithelium | 1.34e-33 | 9 |
simple columnar epithelium | 2.00e-27 | 11 |
ileal mucosa | 1.49e-19 | 3 |
ileum | 1.49e-19 | 3 |
mucosa of small intestine | 1.49e-19 | 3 |
wall of small intestine | 1.49e-19 | 3 |
intestine | 3.11e-19 | 31 |
small intestine | 7.90e-15 | 4 |
gut-associated lymphoid tissue | 3.90e-14 | 2 |
mucosa-associated lymphoid tissue | 3.90e-14 | 2 |
lymphoid tissue | 3.90e-14 | 2 |
gastrointestinal system | 2.51e-12 | 47 |
lymphoid system | 9.97e-10 | 3 |
egg chamber | 6.29e-08 | 1 |