FFCP PHASE1:Mm9::chr9:98936152..98936170,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=382097 | |EntrezGene=382097 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=126 | |||
|TSSclassifier=NA | |||
|UniProt=Q1RME4 | |UniProt=Q1RME4 | ||
|association_with_transcript=-43bp_to_ENSMUST00000076730,NM_001080776,uc009rdu.1_5end | |||
|cluster_id=chr9:98936152..98936170,- | |||
|description=CAGE_peak_3_at_Gm1123_5end | |||
|id=chr9:98936152..98936170,- | |||
|ontology_enrichment_celltype=CL:0002563!3.62e-15!9;CL:0002251!3.62e-15!9;CL:0000239!7.85e-11!6;CL:0000677!7.85e-11!6;CL:0000212!7.85e-11!6;CL:0000584!7.85e-11!6;CL:0000075!3.82e-09!7;CL:0002076!2.82e-08!15;CL:0000066!4.91e-08!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.57e-22,9;CL:0002251,1.57e-22,9;CL:0000239,7.68e-16,6;CL:0000677,7.68e-16,6;CL:0000584,7.68e-16,6;CL:0000075,1.74e-13,7;CL:0000066,3.51e-13,25;CL:0002076,7.06e-13,15;CL:0000223,2.92e-09,20;CL:0000682,3.68e-09,3;CL:0002250,2.91e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!6.66e-31!43;UBERON:0000344!9.16e-26!15;UBERON:0005409!2.05e-23!59;UBERON:0001242!2.23e-22!13;UBERON:0000060!2.23e-22!13;UBERON:0001262!2.23e-22!13;UBERON:0004786!2.23e-22!13;UBERON:0003350!3.62e-15!9;UBERON:0004808!3.62e-15!9;UBERON:0001277!3.62e-15!9;UBERON:0004923!1.84e-14!24;UBERON:0000485!5.00e-12!11;UBERON:0001007!1.06e-07!128;UBERON:0001555!1.06e-07!128;UBERON:0007026!1.06e-07!128;UBERON:0004119!1.88e-07!130;UBERON:0000925!1.88e-07!130;UBERON:0006595!1.88e-07!130;UBERON:0000331!5.18e-07!3;UBERON:0002116!5.18e-07!3;UBERON:0001204!5.18e-07!3;UBERON:0001168!5.18e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.04e-58,31;UBERON:0005409,2.45e-39,47;UBERON:0000344,6.38e-39,15;UBERON:0001242,1.11e-33,13;UBERON:0001262,1.11e-33,13;UBERON:0004786,1.11e-33,13;UBERON:0004923,4.83e-23,24;UBERON:0003350,1.57e-22,9;UBERON:0004808,1.57e-22,9;UBERON:0001277,1.57e-22,9;UBERON:0000485,3.82e-18,11;UBERON:0001007,4.24e-15,116;UBERON:0001555,4.24e-15,116;UBERON:0007026,4.24e-15,116;UBERON:0004119,9.71e-15,118;UBERON:0000925,9.71e-15,118;UBERON:0006595,9.71e-15,118;UBERON:0004921,8.62e-13,114;UBERON:0002108,2.55e-12,4;UBERON:0000331,5.74e-10,3;UBERON:0002116,5.74e-10,3;UBERON:0001204,5.74e-10,3;UBERON:0001168,5.74e-10,3 | |||
|phase1_expression=0,9.07336059862339,9.09998478779072,3.93203474698879,3.50627010962443,8.89760141133016,7.94282978024787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.39969691173627,13.3057383018959,9.76194338995534,7.32295393470427,10.3426191689227,36.4844965356238,38.0565495937495,23.281703618807,0,0,0,3.46621943701529,5.65197794218874,3.87921776898501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,2.39786147410026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.59175283654366,0,0,12.2619386500124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5734010554815,4.7601101999438,0,0,0.128867461322093,1.21010114774006,0.889512175379481,1.90225626112559,9.96511029243474,3.62337700392824,1.25667604400135,1.79060824837036,2.33956904542944,3.59527763461689,10.59076444386,9.95706366271836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775284879504663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.41257840585672,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0,0,0,0,2.85152941241944,0,0,0,0,0,0.258319646955462,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565879024158229,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0,0.192909220463705,0,0,0,0,0,0.145346416632329,0.0941093804153306,0,0,0.263069711437843,0.135804113845862,0,0,0.197008964751127,0,0.154936841185966,0,0,0.233931608445408,0.429742108096597,0,0,0 | |phase1_expression=0,9.07336059862339,9.09998478779072,3.93203474698879,3.50627010962443,8.89760141133016,7.94282978024787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.39969691173627,13.3057383018959,9.76194338995534,7.32295393470427,10.3426191689227,36.4844965356238,38.0565495937495,23.281703618807,0,0,0,3.46621943701529,5.65197794218874,3.87921776898501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,2.39786147410026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.59175283654366,0,0,12.2619386500124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5734010554815,4.7601101999438,0,0,0.128867461322093,1.21010114774006,0.889512175379481,1.90225626112559,9.96511029243474,3.62337700392824,1.25667604400135,1.79060824837036,2.33956904542944,3.59527763461689,10.59076444386,9.95706366271836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775284879504663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.41257840585672,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0,0,0,0,2.85152941241944,0,0,0,0,0,0.258319646955462,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0,0,0,0,0,0,0,0,0,0.565879024158229,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0,0.192909220463705,0,0,0,0,0,0.145346416632329,0.0941093804153306,0,0,0.263069711437843,0.135804113845862,0,0,0.197008964751127,0,0.154936841185966,0,0,0.233931608445408,0.429742108096597,0,0,0 | ||
|short_description=p3@Gm1123 | |||
}} | }} |
Latest revision as of 07:35, 27 September 2015
Short description: | p3@Gm1123 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gm1123_5end |
Coexpression cluster: | MCL_coexpression_mm9:126 |
Association with transcript: | -43bp_to_ENSMUST00000076730, NM_001080776, uc009rdu.1_5end |
EntrezGene: | Gm1123 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.57e-22 | 9 |
epithelial cell of alimentary canal | 1.57e-22 | 9 |
brush border epithelial cell | 7.68e-16 | 6 |
gut absorptive cell | 7.68e-16 | 6 |
enterocyte | 7.68e-16 | 6 |
columnar/cuboidal epithelial cell | 1.74e-13 | 7 |
epithelial cell | 3.51e-13 | 25 |
endo-epithelial cell | 7.06e-13 | 15 |
endodermal cell | 2.92e-09 | 20 |
M cell of gut | 3.68e-09 | 3 |
intestinal crypt stem cell | 2.91e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.04e-58 | 31 |
gastrointestinal system | 2.45e-39 | 47 |
mucosa | 6.38e-39 | 15 |
intestinal mucosa | 1.11e-33 | 13 |
wall of intestine | 1.11e-33 | 13 |
gastrointestinal system mucosa | 1.11e-33 | 13 |
organ component layer | 4.83e-23 | 24 |
epithelium of mucosa | 1.57e-22 | 9 |
gastrointestinal system epithelium | 1.57e-22 | 9 |
intestinal epithelium | 1.57e-22 | 9 |
simple columnar epithelium | 3.82e-18 | 11 |
digestive system | 4.24e-15 | 116 |
digestive tract | 4.24e-15 | 116 |
primitive gut | 4.24e-15 | 116 |
endoderm-derived structure | 9.71e-15 | 118 |
endoderm | 9.71e-15 | 118 |
presumptive endoderm | 9.71e-15 | 118 |
subdivision of digestive tract | 8.62e-13 | 114 |
small intestine | 2.55e-12 | 4 |
ileal mucosa | 5.74e-10 | 3 |
ileum | 5.74e-10 | 3 |
mucosa of small intestine | 5.74e-10 | 3 |
wall of small intestine | 5.74e-10 | 3 |