FFCP PHASE1:Mm9::chr10:75610248..75610260,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=64452 | |EntrezGene=64452 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=24 | |||
|TSSclassifier=NA | |||
|UniProt=G5E836,Q9ET37 | |UniProt=G5E836,Q9ET37 | ||
|association_with_transcript=52bp_to_ENSMUST00000020450,NM_133184,uc007fty.1_5end | |association_with_transcript=52bp_to_ENSMUST00000020450,NM_133184,uc007fty.1_5end | ||
|cluster_id=chr10:75610248..75610260,+ | |||
|description=CAGE_peak_1_at_Slc5a4a_5end | |description=CAGE_peak_1_at_Slc5a4a_5end | ||
|id=chr10:75610248..75610260,+ | |id=chr10:75610248..75610260,+ | ||
|ontology_enrichment_celltype=CL:0002563!3.84e-17!9;CL:0002251!3.84e-17!9;CL:0000239!2.84e-12!6;CL:0000677!2.84e-12!6;CL:0000212!2.84e-12!6;CL:0000584!2.84e-12!6;CL:0000075!2.11e-10!7;CL:0002076!1.49e-09!15;CL:0000066!2.21e-09!25;CL:0000473!5.66e-07!3;CL:0000627!5.66e-07!3;CL:0000682!5.66e-07!3;CL:0000223!9.99e-07!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,1.44e-10,3;CL:0000239,8.15e-10,6;CL:0000677,8.15e-10,6;CL:0000584,8.15e-10,6;CL:0002563,1.41e-09,9;CL:0002251,1.41e-09,9;CL:0000075,2.02e-08,7;CL:0000066,1.14e-07,25 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.68e-32!43;UBERON:0000344!3.65e-25!15;UBERON:0005409!4.72e-23!59;UBERON:0001242!2.56e-21!13;UBERON:0000060!2.56e-21!13;UBERON:0001262!2.56e-21!13;UBERON:0004786!2.56e-21!13;UBERON:0003350!3.84e-17!9;UBERON:0004808!3.84e-17!9;UBERON:0001277!3.84e-17!9;UBERON:0004923!2.21e-14!24;UBERON:0000485!1.09e-13!11;UBERON:0001007!2.14e-08!128;UBERON:0001555!2.14e-08!128;UBERON:0007026!2.14e-08!128;UBERON:0004119!3.74e-08!130;UBERON:0000925!3.74e-08!130;UBERON:0006595!3.74e-08!130;UBERON:0004921!5.37e-07!126;UBERON:0004185!5.37e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.09e-33,31;UBERON:0000344,4.01e-22,15;UBERON:0005409,4.81e-21,47;UBERON:0001242,1.41e-16,13;UBERON:0001262,1.41e-16,13;UBERON:0004786,1.41e-16,13;UBERON:0004923,3.60e-13,24;UBERON:0003350,1.41e-09,9;UBERON:0004808,1.41e-09,9;UBERON:0001277,1.41e-09,9;UBERON:0002108,6.99e-09,4;UBERON:0001007,1.92e-08,116;UBERON:0001555,1.92e-08,116;UBERON:0007026,1.92e-08,116;UBERON:0004119,3.12e-08,118;UBERON:0000925,3.12e-08,118;UBERON:0006595,3.12e-08,118;UBERON:0001155,5.98e-08,2;UBERON:0000059,5.98e-08,2;UBERON:0001962,6.47e-08,2;UBERON:0001961,6.47e-08,2;UBERON:0001744,6.47e-08,2;UBERON:0000485,8.71e-08,11 | |||
|phase1_expression=0,7.32848356042658,4.54999239389536,131.874396129778,148.766031794065,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.4393635146462,8.02932483735095,7.46501553349526,12.0613358924541,1.72376986148711,62.3276815816906,75.3570087982193,0,0,0,0,0.866554859253824,1.66234645358492,0.612508068787107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94933282276679,0,0,0,0,0,0,0,0,0,0,12.6744106488157,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,77.4034877282032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,41.3023478729747,9.52022039988759,0,0,0.128867461322093,0.201683524623343,0.889512175379481,1.90225626112559,40.809499292828,2.47048432086016,0.251335208800269,0,0.38992817423824,24.268124033664,48.4149231719315,67.7080329064848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8251568117134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0.0936415074698824,0,0.0574354689556133,0,0,0,0,0.147198920134397,0,0,0,0,0,0.169229215783353,0.182927972872773,0,0.135804113845862,1.12228454331548,0.237270036248348,0,0,0,0,0,0,0.214871054048298,0,0,0 | |phase1_expression=0,7.32848356042658,4.54999239389536,131.874396129778,148.766031794065,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.4393635146462,8.02932483735095,7.46501553349526,12.0613358924541,1.72376986148711,62.3276815816906,75.3570087982193,0,0,0,0,0.866554859253824,1.66234645358492,0.612508068787107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94933282276679,0,0,0,0,0,0,0,0,0,0,12.6744106488157,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,77.4034877282032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,41.3023478729747,9.52022039988759,0,0,0.128867461322093,0.201683524623343,0.889512175379481,1.90225626112559,40.809499292828,2.47048432086016,0.251335208800269,0,0.38992817423824,24.268124033664,48.4149231719315,67.7080329064848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8251568117134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0.0936415074698824,0,0.0574354689556133,0,0,0,0,0.147198920134397,0,0,0,0,0,0.169229215783353,0.182927972872773,0,0.135804113845862,1.12228454331548,0.237270036248348,0,0,0,0,0,0,0.214871054048298,0,0,0 | ||
|short_description=p1@Slc5a4a | |short_description=p1@Slc5a4a | ||
}} | }} |
Latest revision as of 07:29, 26 September 2015
Short description: | p1@Slc5a4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slc5a4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:24 |
Association with transcript: | 52bp_to_ENSMUST00000020450, NM_133184, uc007fty.1_5end |
EntrezGene: | Slc5a4a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 1.44e-10 | 3 |
brush border epithelial cell | 8.15e-10 | 6 |
gut absorptive cell | 8.15e-10 | 6 |
enterocyte | 8.15e-10 | 6 |
intestinal epithelial cell | 1.41e-09 | 9 |
epithelial cell of alimentary canal | 1.41e-09 | 9 |
columnar/cuboidal epithelial cell | 2.02e-08 | 7 |
epithelial cell | 1.14e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.09e-33 | 31 |
mucosa | 4.01e-22 | 15 |
gastrointestinal system | 4.81e-21 | 47 |
intestinal mucosa | 1.41e-16 | 13 |
wall of intestine | 1.41e-16 | 13 |
gastrointestinal system mucosa | 1.41e-16 | 13 |
organ component layer | 3.60e-13 | 24 |
epithelium of mucosa | 1.41e-09 | 9 |
gastrointestinal system epithelium | 1.41e-09 | 9 |
intestinal epithelium | 1.41e-09 | 9 |
small intestine | 6.99e-09 | 4 |
digestive system | 1.92e-08 | 116 |
digestive tract | 1.92e-08 | 116 |
primitive gut | 1.92e-08 | 116 |
endoderm-derived structure | 3.12e-08 | 118 |
endoderm | 3.12e-08 | 118 |
presumptive endoderm | 3.12e-08 | 118 |
colon | 5.98e-08 | 2 |
large intestine | 5.98e-08 | 2 |
gut-associated lymphoid tissue | 6.47e-08 | 2 |
mucosa-associated lymphoid tissue | 6.47e-08 | 2 |
lymphoid tissue | 6.47e-08 | 2 |
simple columnar epithelium | 8.71e-08 | 11 |