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|ontology_enrichment_disease=
|ontology_enrichment_disease=
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|ontology_enrichment_uberon=UBERON:0000055!6.64e-15!69;UBERON:0001981!7.66e-13!60;UBERON:0007500!7.66e-13!60;UBERON:0004537!7.66e-13!60;UBERON:0006965!7.66e-13!60;UBERON:0002049!4.40e-12!79;UBERON:0007798!4.40e-12!79;UBERON:0000914!9.08e-12!83;UBERON:0002329!9.08e-12!83;UBERON:0003077!9.08e-12!83;UBERON:0003059!9.08e-12!83;UBERON:0007282!9.08e-12!83;UBERON:0009618!9.08e-12!83;UBERON:0007285!9.08e-12!83;UBERON:0001986!2.43e-11!18;UBERON:0004638!2.43e-11!18;UBERON:0004852!2.43e-11!18;UBERON:0004290!4.57e-11!70;UBERON:0001637!1.93e-10!42;UBERON:0003509!1.93e-10!42;UBERON:0004572!1.93e-10!42;UBERON:0004872!1.49e-09!84;UBERON:0000468!2.01e-09!659;UBERON:0000487!2.59e-09!22;UBERON:0000486!7.70e-09!82;UBERON:0006914!8.66e-09!25;UBERON:0001134!1.54e-08!61;UBERON:0002036!1.54e-08!61;UBERON:0003082!1.54e-08!61;UBERON:0000490!2.52e-08!138;UBERON:0004573!2.91e-08!33;UBERON:0004571!2.91e-08!33;UBERON:0002385!6.41e-08!63;UBERON:0001015!6.41e-08!63;UBERON:0000383!6.41e-08!63;UBERON:0000475!1.67e-07!365;UBERON:0000467!1.90e-07!625;UBERON:0000480!2.77e-07!626
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}}
}}

Revision as of 19:50, 8 August 2012


Full id: C4223_Fibroblast_Myoblast_Endothelial_mesothelioma_Adipocyte_bone_Renal



Phase1 CAGE Peaks

Hg19::chr2:36825221..36825236,-p4@FEZ2
Hg19::chr2:36825248..36825261,-p2@FEZ2
Hg19::chr2:36825263..36825274,-p6@FEZ2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
vessel6.64e-1569
blood vessel7.66e-1360
epithelial tube open at both ends7.66e-1360
blood vasculature7.66e-1360
vascular cord7.66e-1360
vasculature4.40e-1279
vascular system4.40e-1279
somite9.08e-1283
paraxial mesoderm9.08e-1283
presomitic mesoderm9.08e-1283
presumptive segmental plate9.08e-1283
trunk paraxial mesoderm9.08e-1283
presumptive paraxial mesoderm9.08e-1283
endothelium2.43e-1118
blood vessel endothelium2.43e-1118
cardiovascular system endothelium2.43e-1118
dermomyotome4.57e-1170
artery1.93e-1042
arterial blood vessel1.93e-1042
arterial system1.93e-1042
splanchnic layer of lateral plate mesoderm1.49e-0984
multi-cellular organism2.01e-09659
simple squamous epithelium2.59e-0922
multilaminar epithelium7.70e-0982
squamous epithelium8.66e-0925
skeletal muscle tissue1.54e-0861
striated muscle tissue1.54e-0861
myotome1.54e-0861
unilaminar epithelium2.52e-08138
systemic artery2.91e-0833
systemic arterial system2.91e-0833
muscle tissue6.41e-0863
musculature6.41e-0863
musculature of body6.41e-0863
organism subdivision1.67e-07365
anatomical system1.90e-07625
anatomical group2.77e-07626


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

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