UBERON:0002319: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 5: | Line 5: | ||
|def="inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [http://sourceforge.net/tracker/?group_id=76834&atid=974957, Wikipedia:Mesangium] | |def="inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [http://sourceforge.net/tracker/?group_id=76834&atid=974957, Wikipedia:Mesangium] | ||
|xref=BTO:0002494;;EMAPA:28248;;FMA:84139;;MA:0002617;;MESH:A.05.810.453.736.520.380;;ncithesaurus:Mesangium | |xref=BTO:0002494;;EMAPA:28248;;FMA:84139;;MA:0002617;;MESH:A.05.810.453.736.520.380;;ncithesaurus:Mesangium | ||
|is_a=UBERON:0003567;;UBERON:0003891;;UBERON:0004120 | |is_a=UBERON:0003567;;UBERON:0003891;;UBERON:0004120;;UBERON:0006554 | ||
|synonym= | |synonym= | ||
|comment=WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished. | |comment=WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished. | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:01, 26 June 2012
| Name: | mesangium | ||
|---|---|---|---|
| Definition: | "inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." Wikipedia:Mesangium | ||
| Xrefs: |
| ||
| Comments: | WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished. | ||
| Alt_id: | UBERON:FMA_84139-MA_0002617 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003567(abdomen connective tissue),UBERON:0003891(stroma),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure) |
|---|
Children
| part of: | UBERON:0002321 (extraglomerular mesangium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11679-122H5 (Renal Mesangial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002319 (mesangium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.34e-79 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_c81513fb666c86109c609c8742e91a38 | p@chr2:133426030..133426041, - |
| 2.34e-79 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_c81513fb666c86109c609c8742e91a38 | p@chr2:133426030..133426041, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_43d1d602090cd22c026a06117a8d1872 | p23@TTC39A |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_43d1d602090cd22c026a06117a8d1872 | p23@TTC39A |
| 2.03e-66 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_8ae2d104090fdb2d489bf1009c3475ae | p@chr2:133426106..133426117, - |
| 2.03e-66 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_8ae2d104090fdb2d489bf1009c3475ae | p@chr2:133426106..133426117, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_c423f62bcf4cddae314c460ede2e2aad | p8@PAX2 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_c423f62bcf4cddae314c460ede2e2aad | p@chr10:134535354..134535366, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_c423f62bcf4cddae314c460ede2e2aad | p8@PAX2 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_c423f62bcf4cddae314c460ede2e2aad | p@chr10:134535354..134535366, - |
| 3.11e-50 | FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_e8e6fb1f5202ae0515b6e2d6c60b9dc4 | p19@PEMT |
| 3.11e-50 | FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_e8e6fb1f5202ae0515b6e2d6c60b9dc4 | p19@PEMT |
| 4.52e-50 | FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_2e677e1044cfd35b2d09728b1c797fee | p@chr9:81641483..81641491, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_2e677e1044cfd35b2d09728b1c797fee | p10@PAX2 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_2e677e1044cfd35b2d09728b1c797fee | p@chr9:81641483..81641491, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_2e677e1044cfd35b2d09728b1c797fee | p10@PAX2 |
| 8.98e-41 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_83fb2c4938b6295ad089af44cd9db6b8 | p@chr17:171082..171101, + |
| 8.98e-41 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_83fb2c4938b6295ad089af44cd9db6b8 | p@chr17:171082..171101, + |
| 1.1e-40 | FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_12c49c2327a177d84f64362866b7b157 | p@chr3:172384246..172384250, + |
| 1.1e-40 | FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_12c49c2327a177d84f64362866b7b157 | p@chr3:172384246..172384250, + |
| 1.64e-40 | FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_29430b1d6f435a156900e011e106282e | p@chr1:45087902..45087912, + |
| 1.64e-40 | FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_29430b1d6f435a156900e011e106282e | p@chr1:45087902..45087912, + |
| 3.68e-40 | FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_17eb6ba3287d7cff079bab4bf2ddfb3c | p5@PAX2 |
| 3.68e-40 | FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_17eb6ba3287d7cff079bab4bf2ddfb3c | p5@PAX2 |
| 8.2e-37 | FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_fde88588a9f8a619354824113f177438 | p6@PAX2 |
| 8.2e-37 | FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_fde88588a9f8a619354824113f177438 | p6@PAX2 |
| 9.84e-37 | FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_5a79f830d8f73d22abd0f9263319f35a | p3@CRB2 |
| 9.84e-37 | FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_5a79f830d8f73d22abd0f9263319f35a | p3@CRB2 |
| 6.0e-34 | FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_4520ce32e55634ce6b8620c73fed66e3 | p@chr2:113984760..113984792, + |
| 6.0e-34 | FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_4520ce32e55634ce6b8620c73fed66e3 | p@chr2:113984760..113984792, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:555661..555679,+#_487e47a109d2a4890ffe464ee5a6d584 | p@chr11:555661..555679, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_487e47a109d2a4890ffe464ee5a6d584 | p@chr7:27164585..27164612, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:555661..555679,+#_487e47a109d2a4890ffe464ee5a6d584 | p@chr11:555661..555679, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:858638..858648,+#_487e47a109d2a4890ffe464ee5a6d584 | p@chr1:858638..858648, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_487e47a109d2a4890ffe464ee5a6d584 | p@chr7:27164585..27164612, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:858638..858648,+#_487e47a109d2a4890ffe464ee5a6d584 | p@chr1:858638..858648, + |
| 8.39e-34 | FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_e2fc01b39b598473a99ec10165ba6688 | p13@SPOCK2 |
| 8.39e-34 | FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_e2fc01b39b598473a99ec10165ba6688 | p13@SPOCK2 |
| 1.17e-33 | FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_61c35d63af4f07a6f1dbf3ef0400d669 | p25@PHLDB1 |
| 1.17e-33 | FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_61c35d63af4f07a6f1dbf3ef0400d669 | p25@PHLDB1 |
| 3.35e-32 | FFCP PHASE2:Hg19::chr2:693362..693373,+#_988a7c8548c7caaf9869de1e6db55b44 | p@chr2:693362..693373, + |
| 3.35e-32 | FFCP PHASE1:Hg19::chr2:693362..693373,+#_988a7c8548c7caaf9869de1e6db55b44 | p@chr2:693362..693373, + |
| 2.54e-31 | FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_11fa3d8a1e300e10ad0cb5dcb03dfd5c | p1@RIPPLY1 |
| 2.54e-31 | FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_11fa3d8a1e300e10ad0cb5dcb03dfd5c | p1@RIPPLY1 |
| 8.05e-30 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_5810dfcbb6480630fc1cee729266895c | p@chr17:171147..171161, + |
| 8.05e-30 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_5810dfcbb6480630fc1cee729266895c | p@chr17:171147..171161, + |
| 2.96e-29 | FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_ddc69187183fa2fb4ac32f6422672bc6 | p@chr2:165477405..165477418, - |
| 2.96e-29 | FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_ddc69187183fa2fb4ac32f6422672bc6 | p@chr2:165477405..165477418, - |
| 4.55e-29 | FFCP PHASE1:Hg19::chr1:874109..874143,+#_5a5dce170b165c792c70711d0b9d646e | p@chr1:874109..874143, + |
| 4.55e-29 | FFCP PHASE2:Hg19::chr1:874109..874143,+#_5a5dce170b165c792c70711d0b9d646e | p@chr1:874109..874143, + |
| 1.43e-28 | FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_555a0be0ead5ff2b8e28b0cabcdac929 | p@chr2:113999199..113999214, + |
| 1.43e-28 | FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_555a0be0ead5ff2b8e28b0cabcdac929 | p@chr2:113999199..113999214, + |
| 1.83e-27 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_c7e11ae2cd6dc4692770f83378b198dc | p@chr16:86604624..86604648, + |
| 1.83e-27 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_c7e11ae2cd6dc4692770f83378b198dc | p7@LRRN4 |
| 1.83e-27 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_c7e11ae2cd6dc4692770f83378b198dc | p7@LRRN4 |
| 1.83e-27 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_c7e11ae2cd6dc4692770f83378b198dc | p@chr16:86604624..86604648, + |
| 2.74e-27 | FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_dfa7a16c9390d24fb9188d911aadb45a | p@chr19:56091499..56091517, - |
| 2.74e-27 | FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_dfa7a16c9390d24fb9188d911aadb45a | p@chr19:56091499..56091517, - |
| 2.78e-26 | FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_22d3d2a84e83e5f11054ef3f35775b99 | p@chr9:112260040..112260045, + |
| 2.78e-26 | FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_22d3d2a84e83e5f11054ef3f35775b99 | p@chr9:112260040..112260045, + |
| 4.63e-26 | FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_7656936f4d6ced936d87a40f0c15b33c | p@chr22:30645170..30645182, - |
| 4.63e-26 | FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_7656936f4d6ced936d87a40f0c15b33c | p@chr22:30645170..30645182, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_a916886536f9b57be6a1f74e03d65819 | p@chr8:22419319..22419327, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_a916886536f9b57be6a1f74e03d65819 | p@chr8:22419319..22419327, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_067a7c334142f6f5be0b31ffd89f670e | p14@PAX2 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_067a7c334142f6f5be0b31ffd89f670e | p@chr6:31833005..31833017, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_067a7c334142f6f5be0b31ffd89f670e | p15@WT1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_067a7c334142f6f5be0b31ffd89f670e | p12@TRIM16 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_067a7c334142f6f5be0b31ffd89f670e | p@chr8:28196820..28196830, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_067a7c334142f6f5be0b31ffd89f670e | p@chr2:176973165..176973169, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_067a7c334142f6f5be0b31ffd89f670e | p14@PAX2 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_067a7c334142f6f5be0b31ffd89f670e | p@chr20:6031540..6031548, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_067a7c334142f6f5be0b31ffd89f670e | p15@WT1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_067a7c334142f6f5be0b31ffd89f670e | p@chr6:31833005..31833017, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_067a7c334142f6f5be0b31ffd89f670e | p12@TRIM16 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_067a7c334142f6f5be0b31ffd89f670e | p@chr8:28196820..28196830, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_067a7c334142f6f5be0b31ffd89f670e | p@chr2:176973165..176973169, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_067a7c334142f6f5be0b31ffd89f670e | p@chr20:6031540..6031548, - |
| 2.37e-25 | FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_1a816c6bc2537ba5917586db2bdab190 | p1@ENST00000523364, p1@uc010kux.1 |
| 2.37e-25 | FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_1a816c6bc2537ba5917586db2bdab190 | p1@ENST00000523364, p1@uc010kux.1 |
| 4.38e-25 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_6627061d99f6fa860e0cbe3079ee08af | p16@HOXA10 |
| 4.38e-25 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_6627061d99f6fa860e0cbe3079ee08af | p16@HOXA10 |
| 4.43e-25 | FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_024155d4b1bfb1c96bf4b5ece6f7af7c | p6@MTMR11 |
| 4.43e-25 | FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_024155d4b1bfb1c96bf4b5ece6f7af7c | p6@MTMR11 |
| 7.09e-25 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0032c61b6baf36a01ec0f043ea8ed237 | p4@PAX2 |
| 7.09e-25 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0032c61b6baf36a01ec0f043ea8ed237 | p4@PAX2 |
| 3.76e-24 | FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_87e460f6859ffb6c3dc6cb9e57e25fa7 | p@chr1:46797583..46797614, - |
| 3.76e-24 | FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_87e460f6859ffb6c3dc6cb9e57e25fa7 | p@chr1:46797583..46797614, - |
| 7.62e-24 | FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_98587b8e20032c31b5e34991f4b5000a | p@chr6:94129519..94129544, + |
| 7.62e-24 | FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_98587b8e20032c31b5e34991f4b5000a | p@chr6:94129519..94129544, + |
| 8.02e-24 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_81af350e48efd606c42320296dc73439 | p@chr2:693380..693398, + |
| 8.02e-24 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_81af350e48efd606c42320296dc73439 | p@chr2:693380..693398, + |
| 8.98e-24 | FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_0dab9e7c42dc61a63eb395fa36d2e1a4 | p@chr2:133426077..133426103, - |
| 8.98e-24 | FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_0dab9e7c42dc61a63eb395fa36d2e1a4 | p@chr2:133426077..133426103, - |
| 1.99e-23 | FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_090ca61caaaf86052af43640058da272 | p5@WT1-AS |
| 1.99e-23 | FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_090ca61caaaf86052af43640058da272 | p5@WT1-AS |
| 4.37e-23 | FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_21b21414c9ed850d15e21aae77b7518d | p@chr2:176968471..176968476, - |
| 4.37e-23 | FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_21b21414c9ed850d15e21aae77b7518d | p@chr2:176968471..176968476, - |
| 4.89e-23 | FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_54bd7ea65274d72921eca858f3545e4c | p1@ENST00000469884 |
| 4.89e-23 | FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_54bd7ea65274d72921eca858f3545e4c | p1@ENST00000469884 |
