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|name=kidney interstitium
|name=kidney interstitium
|namespace=
|namespace=
|def="A portion of interstitial tissue that is part of a kidney [Obol]." [OBOL:automatic]
|def="The interstitium of the kidney comprises the extravascular intertubular spaces of the renal parenchyma, with their attendant cellular elements and extracellular substances. As we define it here, the interstitium is bounded on all sides by tubular and vascular basement membranes." [doi:10.1038/ki.1991.49]
|xref=MA:0002616
|xref=EMAPA:27690;;FMA:70983;;MA:0002616
|is_a=UBERON:0003567;;UBERON:0004120;;UBERON:0005169;;UBERON:0006554
|is_a=UBERON:0003567;;UBERON:0005169;;UBERON:0006554
|synonym=
|synonym="renal interstitium" EXACT [FMA:70983];;"renal stroma" EXACT [FMA:70983]
|comment=
|comment=
|alt_id=
|alt_id=
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0002113
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:06, 26 June 2012

Name:kidney interstitium
Definition:"The interstitium of the kidney comprises the extravascular intertubular spaces of the renal parenchyma, with their attendant cellular elements and extracellular substances. As we define it here, the interstitium is bounded on all sides by tubular and vascular basement membranes." [doi:10.1038/ki.1991.49]
Xrefs:
links:

EMAPA:27690
FMA:70983

MA:0002616
Synonyms: "renal interstitium" EXACT [FMA:70983]
"renal stroma" EXACT [FMA:70983]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003567(abdomen connective tissue),UBERON:0005169(interstitial tissue),UBERON:0006554(urinary system structure)



Children

part of:UBERON:0002319 (mesangium),CL:1000500 (kidney interstitial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005215 (kidney interstitium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.34e-79FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_01ca9060c6fbd8557dede0407c1bdf94p@chr2:133426030..133426041, -
2.34e-79FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_01ca9060c6fbd8557dede0407c1bdf94p@chr2:133426030..133426041, -
3.49e-79FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_4a56a1e5b8b62c4df33ff36fce8027b3p23@TTC39A
3.49e-79FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_4a56a1e5b8b62c4df33ff36fce8027b3p23@TTC39A
2.03e-66FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_c139f43c92cafe2fd7560586be3cf5f4p@chr2:133426106..133426117, -
2.03e-66FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_c139f43c92cafe2fd7560586be3cf5f4p@chr2:133426106..133426117, -
1.46e-50FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_22906cb64dadb69841af8870281b66a6p@chr10:134535354..134535366, -
1.46e-50FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_22906cb64dadb69841af8870281b66a6p8@PAX2
1.46e-50FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_22906cb64dadb69841af8870281b66a6p@chr10:134535354..134535366, -
1.46e-50FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_22906cb64dadb69841af8870281b66a6p8@PAX2
3.11e-50FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_b96310fc1d8b46b4315c1a4f38de8954p19@PEMT
3.11e-50FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_b96310fc1d8b46b4315c1a4f38de8954p19@PEMT
4.52e-50FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_afdab313406b8d41e97443245d764735p10@PAX2
4.52e-50FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_afdab313406b8d41e97443245d764735p@chr9:81641483..81641491, -
4.52e-50FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_afdab313406b8d41e97443245d764735p10@PAX2
4.52e-50FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_afdab313406b8d41e97443245d764735p@chr9:81641483..81641491, -
8.98e-41FFCP PHASE1:Hg19::chr17:171082..171101,+#_05dc0d3099ad71f7d8c44390ea4c680bp@chr17:171082..171101, +
8.98e-41FFCP PHASE2:Hg19::chr17:171082..171101,+#_05dc0d3099ad71f7d8c44390ea4c680bp@chr17:171082..171101, +
1.1e-40FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_41a2b7ccff4c9a2ad5730271c5b1bf2fp@chr3:172384246..172384250, +
1.1e-40FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_41a2b7ccff4c9a2ad5730271c5b1bf2fp@chr3:172384246..172384250, +
1.64e-40FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_5d8f8dff200bf10e34ad2c3e0a7f49abp@chr1:45087902..45087912, +
1.64e-40FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_5d8f8dff200bf10e34ad2c3e0a7f49abp@chr1:45087902..45087912, +
3.68e-40FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_ca3d7639ce7b43e09280b8315badffd5p5@PAX2
3.68e-40FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_ca3d7639ce7b43e09280b8315badffd5p5@PAX2
8.2e-37FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_fee0a251af2a0a3d304bd09e0d997edep6@PAX2
8.2e-37FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_fee0a251af2a0a3d304bd09e0d997edep6@PAX2
9.84e-37FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_25ca27fa5f6544b09991a1655f585671p3@CRB2
9.84e-37FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_25ca27fa5f6544b09991a1655f585671p3@CRB2
6.0e-34FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_60cd15fafd9d511d069c8c6d033e532bp@chr2:113984760..113984792, +
6.0e-34FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_60cd15fafd9d511d069c8c6d033e532bp@chr2:113984760..113984792, +
7.05e-34FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_c1d9158e1375e0d44a9061b8d50991bdp@chr7:27164585..27164612, -
7.05e-34FFCP PHASE1:Hg19::chr11:555661..555679,+#_c1d9158e1375e0d44a9061b8d50991bdp@chr11:555661..555679, +
7.05e-34FFCP PHASE1:Hg19::chr1:858638..858648,+#_c1d9158e1375e0d44a9061b8d50991bdp@chr1:858638..858648, +
7.05e-34FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_c1d9158e1375e0d44a9061b8d50991bdp@chr7:27164585..27164612, -
7.05e-34FFCP PHASE2:Hg19::chr11:555661..555679,+#_c1d9158e1375e0d44a9061b8d50991bdp@chr11:555661..555679, +
7.05e-34FFCP PHASE2:Hg19::chr1:858638..858648,+#_c1d9158e1375e0d44a9061b8d50991bdp@chr1:858638..858648, +
8.39e-34FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_d4a1b526af466afb691eed9fc0e48d5ep13@SPOCK2
8.39e-34FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_d4a1b526af466afb691eed9fc0e48d5ep13@SPOCK2
1.17e-33FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_eb59961e095ea7e530cce2176bd71683p25@PHLDB1
1.17e-33FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_eb59961e095ea7e530cce2176bd71683p25@PHLDB1
3.35e-32FFCP PHASE2:Hg19::chr2:693362..693373,+#_3219e5605607052b771e77b835a4afc8p@chr2:693362..693373, +
3.35e-32FFCP PHASE1:Hg19::chr2:693362..693373,+#_3219e5605607052b771e77b835a4afc8p@chr2:693362..693373, +
2.54e-31FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_2465b38d70f8c26dca35495451dacd76p1@RIPPLY1
2.54e-31FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_2465b38d70f8c26dca35495451dacd76p1@RIPPLY1
8.05e-30FFCP PHASE2:Hg19::chr17:171147..171161,+#_861455930ee9d24ec0feadda8d611bd2p@chr17:171147..171161, +
8.05e-30FFCP PHASE1:Hg19::chr17:171147..171161,+#_861455930ee9d24ec0feadda8d611bd2p@chr17:171147..171161, +
2.96e-29FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_6edf19a36913a3afc3a1e549ed084ab5p@chr2:165477405..165477418, -
2.96e-29FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_6edf19a36913a3afc3a1e549ed084ab5p@chr2:165477405..165477418, -
4.55e-29FFCP PHASE2:Hg19::chr1:874109..874143,+#_4d879eeb52074a0e3410a805c0a7446dp@chr1:874109..874143, +
4.55e-29FFCP PHASE1:Hg19::chr1:874109..874143,+#_4d879eeb52074a0e3410a805c0a7446dp@chr1:874109..874143, +
1.43e-28FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_f82ac557b1fb3f641f956b1407a15951p@chr2:113999199..113999214, +
1.43e-28FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_f82ac557b1fb3f641f956b1407a15951p@chr2:113999199..113999214, +
1.83e-27FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_b1884027baad4849df6f6facb4d0f274p7@LRRN4
1.83e-27FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_b1884027baad4849df6f6facb4d0f274p@chr16:86604624..86604648, +
1.83e-27FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_b1884027baad4849df6f6facb4d0f274p@chr16:86604624..86604648, +
1.83e-27FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_b1884027baad4849df6f6facb4d0f274p7@LRRN4
2.74e-27FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_37ea836b6192522b79c94aff1a59b79ep@chr19:56091499..56091517, -
2.74e-27FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_37ea836b6192522b79c94aff1a59b79ep@chr19:56091499..56091517, -
2.78e-26FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_719eef740d93bd4d01ecc0c725b550ecp@chr9:112260040..112260045, +
2.78e-26FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_719eef740d93bd4d01ecc0c725b550ecp@chr9:112260040..112260045, +
4.63e-26FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_1d4fc000ce0e17da6a27294b921f9e61p@chr22:30645170..30645182, -
4.63e-26FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_1d4fc000ce0e17da6a27294b921f9e61p@chr22:30645170..30645182, -
7.14e-26FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_70d66e3761bab352df30c2ffd277c3e2p@chr8:22419319..22419327, +
7.14e-26FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_70d66e3761bab352df30c2ffd277c3e2p@chr8:22419319..22419327, +
9.18e-26FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_5753dd723a7d4f1c7bbe748d94929280p@chr8:28196820..28196830, +
9.18e-26FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_5753dd723a7d4f1c7bbe748d94929280p@chr2:176973165..176973169, -
9.18e-26FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_5753dd723a7d4f1c7bbe748d94929280p@chr20:6031540..6031548, -
9.18e-26FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_5753dd723a7d4f1c7bbe748d94929280p14@PAX2
9.18e-26FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_5753dd723a7d4f1c7bbe748d94929280p@chr6:31833005..31833017, -
9.18e-26FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_5753dd723a7d4f1c7bbe748d94929280p15@WT1
9.18e-26FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_5753dd723a7d4f1c7bbe748d94929280p12@TRIM16
9.18e-26FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_5753dd723a7d4f1c7bbe748d94929280p@chr8:28196820..28196830, +
9.18e-26FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_5753dd723a7d4f1c7bbe748d94929280p14@PAX2
9.18e-26FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_5753dd723a7d4f1c7bbe748d94929280p@chr2:176973165..176973169, -
9.18e-26FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_5753dd723a7d4f1c7bbe748d94929280p@chr20:6031540..6031548, -
9.18e-26FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_5753dd723a7d4f1c7bbe748d94929280p15@WT1
9.18e-26FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_5753dd723a7d4f1c7bbe748d94929280p@chr6:31833005..31833017, -
9.18e-26FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_5753dd723a7d4f1c7bbe748d94929280p12@TRIM16
2.37e-25FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_6f55239a57be29d1989b42bf0c63afd7p1@ENST00000523364, p1@uc010kux.1
2.37e-25FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_6f55239a57be29d1989b42bf0c63afd7p1@ENST00000523364, p1@uc010kux.1
4.38e-25FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_d7ace7944c1226d4ec7f34ea10c70667p16@HOXA10
4.38e-25FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_d7ace7944c1226d4ec7f34ea10c70667p16@HOXA10
4.43e-25FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_24a4f9f6ae1a09aa92d7cfb928160246p6@MTMR11
4.43e-25FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_24a4f9f6ae1a09aa92d7cfb928160246p6@MTMR11
7.09e-25FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_7a5ff4ed3befe909cee1d15e160bd5a0p4@PAX2
7.09e-25FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_7a5ff4ed3befe909cee1d15e160bd5a0p4@PAX2
3.76e-24FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_99a5aff28a17109cd2ea3144502bc684p@chr1:46797583..46797614, -
3.76e-24FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_99a5aff28a17109cd2ea3144502bc684p@chr1:46797583..46797614, -
7.62e-24FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_ff84ac020faffec43840226390fc14a4p@chr6:94129519..94129544, +
7.62e-24FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_ff84ac020faffec43840226390fc14a4p@chr6:94129519..94129544, +
8.02e-24FFCP PHASE1:Hg19::chr2:693380..693398,+#_39429a22a705f690c9d0a2e9d99415c0p@chr2:693380..693398, +
8.02e-24FFCP PHASE2:Hg19::chr2:693380..693398,+#_39429a22a705f690c9d0a2e9d99415c0p@chr2:693380..693398, +
8.98e-24FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_50178d33ae0437641e1a3ae348c5c5d7p@chr2:133426077..133426103, -
8.98e-24FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_50178d33ae0437641e1a3ae348c5c5d7p@chr2:133426077..133426103, -
1.99e-23FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_67461bd5e7524b33b55b1c54c0af41bfp5@WT1-AS
1.99e-23FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_67461bd5e7524b33b55b1c54c0af41bfp5@WT1-AS
4.37e-23FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_92342aae79d2d1f586453c9cbeedd3dcp@chr2:176968471..176968476, -
4.37e-23FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_92342aae79d2d1f586453c9cbeedd3dcp@chr2:176968471..176968476, -
4.89e-23FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_962b3e749956d6655be1faf6cd14670fp1@ENST00000469884
4.89e-23FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_962b3e749956d6655be1faf6cd14670fp1@ENST00000469884

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